data_1CSH # _model_server_result.job_id fa4yiRjws6hGFwpo5IPByA _model_server_result.datetime_utc '2024-11-25 16:06:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1csh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":700}' # _entry.id 1CSH # _exptl.entry_id 1CSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 792.52 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMIDOCARBOXYMETHYLDETHIA COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 78.9 _cell.angle_gamma 90 _cell.entry_id 1CSH _cell.length_a 104.4 _cell.length_b 78.5 _cell.length_c 58.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H39 N8 O17 P3' _chem_comp.formula_weight 792.52 _chem_comp.id AMX _chem_comp.mon_nstd_flag . _chem_comp.name 'AMIDOCARBOXYMETHYLDETHIA COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A AMX sing 13 n y N1A C6A AMX doub 14 n y C2A N3A AMX doub 15 n y C2A H2A AMX sing 16 n n N3A C4A AMX sing 17 n y C4A C5A AMX doub 18 n y C4A N9A AMX sing 19 n y C5A C6A AMX sing 20 n y C5A N7A AMX sing 21 n y C6A N6A AMX sing 22 n n N6A H61A AMX sing 23 n n N6A H62A AMX sing 24 n n N7A C8A AMX doub 25 n y C8A N9A AMX sing 26 n y C8A H8A AMX sing 27 n n N9A C1B AMX sing 28 n n C1B C2B AMX sing 29 n n C1B O4B AMX sing 30 n n C1B H1B AMX sing 31 n n C2B O2B AMX sing 32 n n C2B C3B AMX sing 33 n n C2B H2B AMX sing 34 n n O2B HO2A AMX sing 35 n n C3B O3B AMX sing 36 n n C3B C4B AMX sing 37 n n C3B H3B AMX sing 38 n n O3B P3B AMX sing 39 n n P3B O7A AMX doub 40 n n P3B O8A AMX sing 41 n n P3B O9A AMX sing 42 n n O8A HOA8 AMX sing 43 n n O9A HOA9 AMX sing 44 n n C4B O4B AMX sing 45 n n C4B C5B AMX sing 46 n n C4B H4B AMX sing 47 n n C5B O5B AMX sing 48 n n C5B H51A AMX sing 49 n n C5B H52A AMX sing 50 n n O5B P1A AMX sing 51 n n P1A O1A AMX doub 52 n n P1A O2A AMX sing 53 n n P1A O3A AMX sing 54 n n O2A HOA2 AMX sing 55 n n O3A P2A AMX sing 56 n n P2A O4A AMX doub 57 n n P2A O5A AMX sing 58 n n P2A O6A AMX sing 59 n n O5A HOA5 AMX sing 60 n n O6A CCP AMX sing 61 n n CBP CCP AMX sing 62 n n CBP CDP AMX sing 63 n n CBP CEP AMX sing 64 n n CBP CAP AMX sing 65 n n CCP H121 AMX sing 66 n n CCP H122 AMX sing 67 n n CDP H131 AMX sing 68 n n CDP H132 AMX sing 69 n n CDP H133 AMX sing 70 n n CEP H141 AMX sing 71 n n CEP H142 AMX sing 72 n n CEP H143 AMX sing 73 n n CAP OAP AMX sing 74 n n CAP C9P AMX sing 75 n n CAP H10 AMX sing 76 n n OAP HO1 AMX sing 77 n n C9P O9P AMX doub 78 n n C9P N8P AMX sing 79 n n N8P C7P AMX sing 80 n n N8P HN8 AMX sing 81 n n C7P C6P AMX sing 82 n n C7P H71 AMX sing 83 n n C7P H72 AMX sing 84 n n C6P C5P AMX sing 85 n n C6P H61 AMX sing 86 n n C6P H62 AMX sing 87 n n C5P O5P AMX doub 88 n n C5P N4P AMX sing 89 n n N4P C3P AMX sing 90 n n N4P HN4 AMX sing 91 n n C3P C2P AMX sing 92 n n C3P H31 AMX sing 93 n n C3P H32 AMX sing 94 n n C2P C1 AMX sing 95 n n C2P H21 AMX sing 96 n n C2P H22 AMX sing 97 n n C1 C2 AMX sing 98 n n C1 H11 AMX sing 99 n n C1 H12 AMX sing 100 n n C2 O2 AMX doub 101 n n C2 N2 AMX sing 102 n n N2 HN21 AMX sing 103 n n N2 HN22 AMX sing 104 n n # _atom_sites.entry_id 1CSH _atom_sites.fract_transf_matrix[1][1] 0.009579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.001879 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAA A 1 702 702 OAA OAA . C 3 AMX A 1 700 700 AMX AMX . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 510 510 HOH HOH . D 4 HOH A 10 511 511 HOH HOH . D 4 HOH A 11 512 512 HOH HOH . D 4 HOH A 12 513 513 HOH HOH . D 4 HOH A 13 514 514 HOH HOH . D 4 HOH A 14 515 515 HOH HOH . D 4 HOH A 15 516 516 HOH HOH . D 4 HOH A 16 517 517 HOH HOH . D 4 HOH A 17 518 518 HOH HOH . D 4 HOH A 18 519 519 HOH HOH . D 4 HOH A 19 520 520 HOH HOH . D 4 HOH A 20 521 521 HOH HOH . D 4 HOH A 21 522 522 HOH HOH . D 4 HOH A 22 523 523 HOH HOH . D 4 HOH A 23 524 524 HOH HOH . D 4 HOH A 24 526 526 HOH HOH . D 4 HOH A 25 527 527 HOH HOH . D 4 HOH A 26 528 528 HOH HOH . D 4 HOH A 27 529 529 HOH HOH . D 4 HOH A 28 530 530 HOH HOH . D 4 HOH A 29 532 532 HOH HOH . D 4 HOH A 30 533 533 HOH HOH . D 4 HOH A 31 534 534 HOH HOH . D 4 HOH A 32 535 535 HOH HOH . D 4 HOH A 33 536 536 HOH HOH . D 4 HOH A 34 537 537 HOH HOH . D 4 HOH A 35 538 538 HOH HOH . D 4 HOH A 36 539 539 HOH HOH . D 4 HOH A 37 540 540 HOH HOH . D 4 HOH A 38 541 541 HOH HOH . D 4 HOH A 39 542 542 HOH HOH . D 4 HOH A 40 543 543 HOH HOH . D 4 HOH A 41 544 544 HOH HOH . D 4 HOH A 42 545 545 HOH HOH . D 4 HOH A 43 546 546 HOH HOH . D 4 HOH A 44 547 547 HOH HOH . D 4 HOH A 45 548 548 HOH HOH . D 4 HOH A 46 549 549 HOH HOH . D 4 HOH A 47 550 550 HOH HOH . D 4 HOH A 48 555 555 HOH HOH . D 4 HOH A 49 559 559 HOH HOH . D 4 HOH A 50 561 561 HOH HOH . D 4 HOH A 51 562 562 HOH HOH . D 4 HOH A 52 566 566 HOH HOH . D 4 HOH A 53 568 568 HOH HOH . D 4 HOH A 54 570 570 HOH HOH . D 4 HOH A 55 571 571 HOH HOH . D 4 HOH A 56 574 574 HOH HOH . D 4 HOH A 57 575 575 HOH HOH . D 4 HOH A 58 578 578 HOH HOH . D 4 HOH A 59 580 580 HOH HOH . D 4 HOH A 60 581 581 HOH HOH . D 4 HOH A 61 582 582 HOH HOH . D 4 HOH A 62 583 583 HOH HOH . D 4 HOH A 63 584 584 HOH HOH . D 4 HOH A 64 585 585 HOH HOH . D 4 HOH A 65 586 586 HOH HOH . D 4 HOH A 66 587 587 HOH HOH . D 4 HOH A 67 588 588 HOH HOH . D 4 HOH A 68 589 589 HOH HOH . D 4 HOH A 69 590 590 HOH HOH . D 4 HOH A 70 591 591 HOH HOH . D 4 HOH A 71 592 592 HOH HOH . D 4 HOH A 72 593 593 HOH HOH . D 4 HOH A 73 595 595 HOH HOH . D 4 HOH A 74 596 596 HOH HOH . D 4 HOH A 75 597 597 HOH HOH . D 4 HOH A 76 598 598 HOH HOH . D 4 HOH A 77 599 599 HOH HOH . D 4 HOH A 78 600 600 HOH HOH . D 4 HOH A 79 601 601 HOH HOH . D 4 HOH A 80 602 602 HOH HOH . D 4 HOH A 81 603 603 HOH HOH . D 4 HOH A 82 604 604 HOH HOH . D 4 HOH A 83 605 605 HOH HOH . D 4 HOH A 84 606 606 HOH HOH . D 4 HOH A 85 610 610 HOH HOH . D 4 HOH A 86 611 611 HOH HOH . D 4 HOH A 87 612 612 HOH HOH . D 4 HOH A 88 613 613 HOH HOH . D 4 HOH A 89 614 614 HOH HOH . D 4 HOH A 90 615 615 HOH HOH . D 4 HOH A 91 616 616 HOH HOH . D 4 HOH A 92 617 617 HOH HOH . D 4 HOH A 93 618 618 HOH HOH . D 4 HOH A 94 619 619 HOH HOH . D 4 HOH A 95 620 620 HOH HOH . D 4 HOH A 96 621 621 HOH HOH . D 4 HOH A 97 622 622 HOH HOH . D 4 HOH A 98 623 623 HOH HOH . D 4 HOH A 99 624 624 HOH HOH . D 4 HOH A 100 625 625 HOH HOH . D 4 HOH A 101 626 626 HOH HOH . D 4 HOH A 102 627 627 HOH HOH . D 4 HOH A 103 628 628 HOH HOH . D 4 HOH A 104 629 629 HOH HOH . D 4 HOH A 105 630 630 HOH HOH . D 4 HOH A 106 631 631 HOH HOH . D 4 HOH A 107 632 632 HOH HOH . D 4 HOH A 108 633 633 HOH HOH . D 4 HOH A 109 634 634 HOH HOH . D 4 HOH A 110 635 635 HOH HOH . D 4 HOH A 111 636 636 HOH HOH . D 4 HOH A 112 637 637 HOH HOH . D 4 HOH A 113 638 638 HOH HOH . D 4 HOH A 114 639 639 HOH HOH . D 4 HOH A 115 640 640 HOH HOH . D 4 HOH A 116 641 641 HOH HOH . D 4 HOH A 117 642 642 HOH HOH . D 4 HOH A 118 643 643 HOH HOH . D 4 HOH A 119 644 644 HOH HOH . D 4 HOH A 120 645 645 HOH HOH . D 4 HOH A 121 646 646 HOH HOH . D 4 HOH A 122 647 647 HOH HOH . D 4 HOH A 123 648 648 HOH HOH . D 4 HOH A 124 649 649 HOH HOH . D 4 HOH A 125 650 650 HOH HOH . D 4 HOH A 126 651 651 HOH HOH . D 4 HOH A 127 652 652 HOH HOH . D 4 HOH A 128 653 653 HOH HOH . D 4 HOH A 129 654 654 HOH HOH . D 4 HOH A 130 655 655 HOH HOH . D 4 HOH A 131 656 656 HOH HOH . D 4 HOH A 132 657 657 HOH HOH . D 4 HOH A 133 658 658 HOH HOH . D 4 HOH A 134 659 659 HOH HOH . D 4 HOH A 135 660 660 HOH HOH . D 4 HOH A 136 661 661 HOH HOH . D 4 HOH A 137 662 662 HOH HOH . D 4 HOH A 138 663 663 HOH HOH . D 4 HOH A 139 664 664 HOH HOH . D 4 HOH A 140 665 665 HOH HOH . D 4 HOH A 141 666 666 HOH HOH . D 4 HOH A 142 667 667 HOH HOH . D 4 HOH A 143 668 668 HOH HOH . D 4 HOH A 144 669 669 HOH HOH . D 4 HOH A 145 670 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A AMX . . . C 3 19.531 -8.047 13.305 1 15.91 ? N1A AMX 700 A 1 HETATM 2 C C2A AMX . . . C 3 18.96 -8.618 14.353 1 12.75 ? C2A AMX 700 A 1 HETATM 3 N N3A AMX . . . C 3 18.129 -9.653 14.415 1 17.7 ? N3A AMX 700 A 1 HETATM 4 C C4A AMX . . . C 3 17.892 -10.167 13.205 1 32 ? C4A AMX 700 A 1 HETATM 5 C C5A AMX . . . C 3 18.401 -9.691 12.012 1 15.45 ? C5A AMX 700 A 1 HETATM 6 C C6A AMX . . . C 3 19.277 -8.579 12.091 1 9.27 ? C6A AMX 700 A 1 HETATM 7 N N6A AMX . . . C 3 19.838 -7.966 11.082 1 9.36 ? N6A AMX 700 A 1 HETATM 8 N N7A AMX . . . C 3 17.913 -10.472 10.969 1 11.13 ? N7A AMX 700 A 1 HETATM 9 C C8A AMX . . . C 3 17.149 -11.396 11.547 1 15.23 ? C8A AMX 700 A 1 HETATM 10 N N9A AMX . . . C 3 17.135 -11.287 12.911 1 10.73 ? N9A AMX 700 A 1 HETATM 11 C C1B AMX . . . C 3 16.242 -12.064 13.773 1 15.3 ? C1B AMX 700 A 1 HETATM 12 C C2B AMX . . . C 3 14.815 -11.783 13.321 1 10.36 ? C2B AMX 700 A 1 HETATM 13 O O2B AMX . . . C 3 14.373 -10.485 13.624 1 17.83 ? O2B AMX 700 A 1 HETATM 14 C C3B AMX . . . C 3 14.095 -12.954 14.005 1 14.09 ? C3B AMX 700 A 1 HETATM 15 O O3B AMX . . . C 3 14.063 -12.857 15.409 1 31.59 ? O3B AMX 700 A 1 HETATM 16 P P3B AMX . . . C 3 12.653 -13.089 16.19 1 51.36 ? P3B AMX 700 A 1 HETATM 17 O O7A AMX . . . C 3 11.598 -12.387 15.403 1 53.74 ? O7A AMX 700 A 1 HETATM 18 O O8A AMX . . . C 3 12.8 -12.747 17.631 1 73.6 ? O8A AMX 700 A 1 HETATM 19 O O9A AMX . . . C 3 12.433 -14.565 16.065 1 37.81 ? O9A AMX 700 A 1 HETATM 20 C C4B AMX . . . C 3 15.053 -14.075 13.651 1 12 ? C4B AMX 700 A 1 HETATM 21 O O4B AMX . . . C 3 16.346 -13.422 13.491 1 16.5 ? O4B AMX 700 A 1 HETATM 22 C C5B AMX . . . C 3 14.703 -14.819 12.389 1 15.1 ? C5B AMX 700 A 1 HETATM 23 O O5B AMX . . . C 3 14.447 -13.88 11.343 1 9.97 ? O5B AMX 700 A 1 HETATM 24 P P1A AMX . . . C 3 14.82 -14.33 9.854 1 14.35 ? P1A AMX 700 A 1 HETATM 25 O O1A AMX . . . C 3 13.992 -15.538 9.476 1 19.01 ? O1A AMX 700 A 1 HETATM 26 O O2A AMX . . . C 3 16.287 -14.428 9.833 1 16.6 ? O2A AMX 700 A 1 HETATM 27 O O3A AMX . . . C 3 14.449 -12.948 9.157 1 17.9 ? O3A AMX 700 A 1 HETATM 28 P P2A AMX . . . C 3 13.059 -12.627 8.405 1 15.49 ? P2A AMX 700 A 1 HETATM 29 O O4A AMX . . . C 3 13.045 -13.312 7.078 1 19.05 ? O4A AMX 700 A 1 HETATM 30 O O5A AMX . . . C 3 11.882 -12.524 9.301 1 11.98 ? O5A AMX 700 A 1 HETATM 31 O O6A AMX . . . C 3 13.399 -11.058 8.129 1 12.02 ? O6A AMX 700 A 1 HETATM 32 C CBP AMX . . . C 3 14.734 -9.179 7.541 1 10.14 ? CBP AMX 700 A 1 HETATM 33 C CCP AMX . . . C 3 14.359 -10.604 7.185 1 14.05 ? CCP AMX 700 A 1 HETATM 34 C CDP AMX . . . C 3 15.428 -8.51 6.33 1 9.35 ? CDP AMX 700 A 1 HETATM 35 C CEP AMX . . . C 3 13.444 -8.474 7.995 1 9.16 ? CEP AMX 700 A 1 HETATM 36 C CAP AMX . . . C 3 15.7 -9.285 8.744 1 7.71 ? CAP AMX 700 A 1 HETATM 37 O OAP AMX . . . C 3 16.872 -9.993 8.344 1 9.2 ? OAP AMX 700 A 1 HETATM 38 C C9P AMX . . . C 3 16.034 -7.932 9.349 1 9.6 ? C9P AMX 700 A 1 HETATM 39 O O9P AMX . . . C 3 15.277 -7.475 10.231 1 11.03 ? O9P AMX 700 A 1 HETATM 40 N N8P AMX . . . C 3 17.105 -7.293 8.905 1 12.34 ? N8P AMX 700 A 1 HETATM 41 C C7P AMX . . . C 3 17.455 -5.96 9.44 1 15.64 ? C7P AMX 700 A 1 HETATM 42 C C6P AMX . . . C 3 16.76 -4.865 8.608 1 7.41 ? C6P AMX 700 A 1 HETATM 43 C C5P AMX . . . C 3 17.261 -4.744 7.171 1 13.61 ? C5P AMX 700 A 1 HETATM 44 O O5P AMX . . . C 3 18.473 -4.749 6.935 1 11.16 ? O5P AMX 700 A 1 HETATM 45 N N4P AMX . . . C 3 16.327 -4.606 6.203 1 10.71 ? N4P AMX 700 A 1 HETATM 46 C C3P AMX . . . C 3 16.682 -4.44 4.805 1 14.11 ? C3P AMX 700 A 1 HETATM 47 C C2P AMX . . . C 3 16.388 -5.67 3.929 1 11.29 ? C2P AMX 700 A 1 HETATM 48 C C1 AMX . . . C 3 16.736 -5.328 2.447 1 9.29 ? C1 AMX 700 A 1 HETATM 49 C C2 AMX . . . C 3 15.667 -4.443 1.807 1 8.95 ? C2 AMX 700 A 1 HETATM 50 O O2 AMX . . . C 3 14.492 -4.795 1.89 1 9.79 ? O2 AMX 700 A 1 HETATM 51 N N2 AMX . . . C 3 16.023 -3.249 1.353 1 11.09 ? N2 AMX 700 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #