data_1CSI # _model_server_result.job_id 6Lj67Jvy5m2Jv7vmAwwveg _model_server_result.datetime_utc '2024-11-22 16:40:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1csi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":700}' # _entry.id 1CSI # _exptl.entry_id 1CSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 793.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBOXYMETHYLDETHIA COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 78.9 _cell.angle_gamma 90 _cell.entry_id 1CSI _cell.length_a 104.4 _cell.length_b 78.5 _cell.length_c 58.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O18 P3' _chem_comp.formula_weight 793.505 _chem_comp.id CMX _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBOXYMETHYLDETHIA COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CMX sing 70 n y N1A C6A CMX doub 71 n y C2A N3A CMX doub 72 n y C2A H2A CMX sing 73 n n N3A C4A CMX sing 74 n y C4A C5A CMX doub 75 n y C4A N9A CMX sing 76 n y C5A C6A CMX sing 77 n y C5A N7A CMX sing 78 n y C6A N6A CMX sing 79 n n N6A H61A CMX sing 80 n n N6A H62A CMX sing 81 n n N7A C8A CMX doub 82 n y C8A N9A CMX sing 83 n y C8A H8A CMX sing 84 n n N9A C1B CMX sing 85 n n C1B C2B CMX sing 86 n n C1B O4B CMX sing 87 n n C1B H1B CMX sing 88 n n C2B O2B CMX sing 89 n n C2B C3B CMX sing 90 n n C2B H2B CMX sing 91 n n O2B HO2A CMX sing 92 n n C3B O3B CMX sing 93 n n C3B C4B CMX sing 94 n n C3B H3B CMX sing 95 n n O3B P3B CMX sing 96 n n P3B O7A CMX doub 97 n n P3B O8A CMX sing 98 n n P3B O9A CMX sing 99 n n O8A HOA8 CMX sing 100 n n O9A HOA9 CMX sing 101 n n C4B O4B CMX sing 102 n n C4B C5B CMX sing 103 n n C4B H4B CMX sing 104 n n C5B O5B CMX sing 105 n n C5B H51A CMX sing 106 n n C5B H52A CMX sing 107 n n O5B P1A CMX sing 108 n n P1A O1A CMX doub 109 n n P1A O2A CMX sing 110 n n P1A O3A CMX sing 111 n n O2A HOA2 CMX sing 112 n n O3A P2A CMX sing 113 n n P2A O4A CMX doub 114 n n P2A O5A CMX sing 115 n n P2A O6A CMX sing 116 n n O5A HOA5 CMX sing 117 n n O6A CCP CMX sing 118 n n CBP CCP CMX sing 119 n n CBP CDP CMX sing 120 n n CBP CEP CMX sing 121 n n CBP CAP CMX sing 122 n n CCP H121 CMX sing 123 n n CCP H122 CMX sing 124 n n CDP H131 CMX sing 125 n n CDP H132 CMX sing 126 n n CDP H133 CMX sing 127 n n CEP H141 CMX sing 128 n n CEP H142 CMX sing 129 n n CEP H143 CMX sing 130 n n CAP OAP CMX sing 131 n n CAP C9P CMX sing 132 n n CAP H10 CMX sing 133 n n OAP HO1 CMX sing 134 n n C9P O9P CMX doub 135 n n C9P N8P CMX sing 136 n n N8P C7P CMX sing 137 n n N8P HN8 CMX sing 138 n n C7P C6P CMX sing 139 n n C7P H71 CMX sing 140 n n C7P H72 CMX sing 141 n n C6P C5P CMX sing 142 n n C6P H61 CMX sing 143 n n C6P H62 CMX sing 144 n n C5P O5P CMX doub 145 n n C5P N4P CMX sing 146 n n N4P C3P CMX sing 147 n n N4P HN4 CMX sing 148 n n C3P C2P CMX sing 149 n n C3P H31 CMX sing 150 n n C3P H32 CMX sing 151 n n C2P C1 CMX sing 152 n n C2P H21 CMX sing 153 n n C2P H22 CMX sing 154 n n C1 C2 CMX sing 155 n n C1 H11 CMX sing 156 n n C1 H12 CMX sing 157 n n C2 O21 CMX doub 158 n n C2 O22 CMX sing 159 n n O22 HO2 CMX sing 160 n n # _atom_sites.entry_id 1CSI _atom_sites.fract_transf_matrix[1][1] 0.009579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.001879 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAA A 1 702 702 OAA OAA . C 3 CMX A 1 700 700 CMX CMX . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 510 510 HOH HOH . D 4 HOH A 10 511 511 HOH HOH . D 4 HOH A 11 512 512 HOH HOH . D 4 HOH A 12 513 513 HOH HOH . D 4 HOH A 13 514 514 HOH HOH . D 4 HOH A 14 515 515 HOH HOH . D 4 HOH A 15 516 516 HOH HOH . D 4 HOH A 16 517 517 HOH HOH . D 4 HOH A 17 518 518 HOH HOH . D 4 HOH A 18 519 519 HOH HOH . D 4 HOH A 19 520 520 HOH HOH . D 4 HOH A 20 521 521 HOH HOH . D 4 HOH A 21 522 522 HOH HOH . D 4 HOH A 22 523 523 HOH HOH . D 4 HOH A 23 524 524 HOH HOH . D 4 HOH A 24 526 526 HOH HOH . D 4 HOH A 25 527 527 HOH HOH . D 4 HOH A 26 528 528 HOH HOH . D 4 HOH A 27 529 529 HOH HOH . D 4 HOH A 28 530 530 HOH HOH . D 4 HOH A 29 532 532 HOH HOH . D 4 HOH A 30 533 533 HOH HOH . D 4 HOH A 31 534 534 HOH HOH . D 4 HOH A 32 535 535 HOH HOH . D 4 HOH A 33 536 536 HOH HOH . D 4 HOH A 34 537 537 HOH HOH . D 4 HOH A 35 538 538 HOH HOH . D 4 HOH A 36 539 539 HOH HOH . D 4 HOH A 37 540 540 HOH HOH . D 4 HOH A 38 541 541 HOH HOH . D 4 HOH A 39 542 542 HOH HOH . D 4 HOH A 40 543 543 HOH HOH . D 4 HOH A 41 544 544 HOH HOH . D 4 HOH A 42 545 545 HOH HOH . D 4 HOH A 43 546 546 HOH HOH . D 4 HOH A 44 547 547 HOH HOH . D 4 HOH A 45 548 548 HOH HOH . D 4 HOH A 46 549 549 HOH HOH . D 4 HOH A 47 550 550 HOH HOH . D 4 HOH A 48 555 555 HOH HOH . D 4 HOH A 49 561 561 HOH HOH . D 4 HOH A 50 562 562 HOH HOH . D 4 HOH A 51 566 566 HOH HOH . D 4 HOH A 52 568 568 HOH HOH . D 4 HOH A 53 570 570 HOH HOH . D 4 HOH A 54 571 571 HOH HOH . D 4 HOH A 55 574 574 HOH HOH . D 4 HOH A 56 575 575 HOH HOH . D 4 HOH A 57 578 578 HOH HOH . D 4 HOH A 58 580 580 HOH HOH . D 4 HOH A 59 581 581 HOH HOH . D 4 HOH A 60 582 582 HOH HOH . D 4 HOH A 61 583 583 HOH HOH . D 4 HOH A 62 584 584 HOH HOH . D 4 HOH A 63 585 585 HOH HOH . D 4 HOH A 64 586 586 HOH HOH . D 4 HOH A 65 587 587 HOH HOH . D 4 HOH A 66 588 588 HOH HOH . D 4 HOH A 67 589 589 HOH HOH . D 4 HOH A 68 590 590 HOH HOH . D 4 HOH A 69 591 591 HOH HOH . D 4 HOH A 70 592 592 HOH HOH . D 4 HOH A 71 593 593 HOH HOH . D 4 HOH A 72 595 595 HOH HOH . D 4 HOH A 73 596 596 HOH HOH . D 4 HOH A 74 597 597 HOH HOH . D 4 HOH A 75 598 598 HOH HOH . D 4 HOH A 76 599 599 HOH HOH . D 4 HOH A 77 600 600 HOH HOH . D 4 HOH A 78 601 601 HOH HOH . D 4 HOH A 79 602 602 HOH HOH . D 4 HOH A 80 603 603 HOH HOH . D 4 HOH A 81 604 604 HOH HOH . D 4 HOH A 82 605 605 HOH HOH . D 4 HOH A 83 606 606 HOH HOH . D 4 HOH A 84 610 610 HOH HOH . D 4 HOH A 85 611 611 HOH HOH . D 4 HOH A 86 612 612 HOH HOH . D 4 HOH A 87 613 613 HOH HOH . D 4 HOH A 88 614 614 HOH HOH . D 4 HOH A 89 615 615 HOH HOH . D 4 HOH A 90 616 616 HOH HOH . D 4 HOH A 91 617 617 HOH HOH . D 4 HOH A 92 618 618 HOH HOH . D 4 HOH A 93 619 619 HOH HOH . D 4 HOH A 94 620 620 HOH HOH . D 4 HOH A 95 621 621 HOH HOH . D 4 HOH A 96 622 622 HOH HOH . D 4 HOH A 97 623 623 HOH HOH . D 4 HOH A 98 624 624 HOH HOH . D 4 HOH A 99 625 625 HOH HOH . D 4 HOH A 100 626 626 HOH HOH . D 4 HOH A 101 627 627 HOH HOH . D 4 HOH A 102 628 628 HOH HOH . D 4 HOH A 103 629 629 HOH HOH . D 4 HOH A 104 630 630 HOH HOH . D 4 HOH A 105 631 631 HOH HOH . D 4 HOH A 106 632 632 HOH HOH . D 4 HOH A 107 633 633 HOH HOH . D 4 HOH A 108 634 634 HOH HOH . D 4 HOH A 109 635 635 HOH HOH . D 4 HOH A 110 636 636 HOH HOH . D 4 HOH A 111 637 637 HOH HOH . D 4 HOH A 112 638 638 HOH HOH . D 4 HOH A 113 639 639 HOH HOH . D 4 HOH A 114 640 640 HOH HOH . D 4 HOH A 115 641 641 HOH HOH . D 4 HOH A 116 642 642 HOH HOH . D 4 HOH A 117 644 644 HOH HOH . D 4 HOH A 118 645 645 HOH HOH . D 4 HOH A 119 646 646 HOH HOH . D 4 HOH A 120 647 647 HOH HOH . D 4 HOH A 121 648 648 HOH HOH . D 4 HOH A 122 649 649 HOH HOH . D 4 HOH A 123 650 650 HOH HOH . D 4 HOH A 124 651 651 HOH HOH . D 4 HOH A 125 652 652 HOH HOH . D 4 HOH A 126 653 653 HOH HOH . D 4 HOH A 127 654 654 HOH HOH . D 4 HOH A 128 655 655 HOH HOH . D 4 HOH A 129 656 656 HOH HOH . D 4 HOH A 130 657 657 HOH HOH . D 4 HOH A 131 658 658 HOH HOH . D 4 HOH A 132 659 659 HOH HOH . D 4 HOH A 133 660 660 HOH HOH . D 4 HOH A 134 661 661 HOH HOH . D 4 HOH A 135 662 662 HOH HOH . D 4 HOH A 136 663 663 HOH HOH . D 4 HOH A 137 664 664 HOH HOH . D 4 HOH A 138 665 665 HOH HOH . D 4 HOH A 139 666 666 HOH HOH . D 4 HOH A 140 667 667 HOH HOH . D 4 HOH A 141 668 668 HOH HOH . D 4 HOH A 142 669 669 HOH HOH . D 4 HOH A 143 670 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CMX . . . C 3 19.521 -8.093 13.346 1 7.67 ? N1A CMX 700 A 1 HETATM 2 C C2A CMX . . . C 3 18.98 -8.66 14.407 1 20.95 ? C2A CMX 700 A 1 HETATM 3 N N3A CMX . . . C 3 18.156 -9.698 14.467 1 9.29 ? N3A CMX 700 A 1 HETATM 4 C C4A CMX . . . C 3 17.902 -10.188 13.242 1 24.09 ? C4A CMX 700 A 1 HETATM 5 C C5A CMX . . . C 3 18.402 -9.74 12.042 1 6.71 ? C5A CMX 700 A 1 HETATM 6 C C6A CMX . . . C 3 19.265 -8.633 12.104 1 7.67 ? C6A CMX 700 A 1 HETATM 7 N N6A CMX . . . C 3 19.8 -8.047 11.053 1 4.31 ? N6A CMX 700 A 1 HETATM 8 N N7A CMX . . . C 3 17.876 -10.504 10.989 1 11.24 ? N7A CMX 700 A 1 HETATM 9 C C8A CMX . . . C 3 17.122 -11.401 11.569 1 13.18 ? C8A CMX 700 A 1 HETATM 10 N N9A CMX . . . C 3 17.107 -11.282 12.948 1 6.69 ? N9A CMX 700 A 1 HETATM 11 C C1B CMX . . . C 3 16.234 -12.115 13.787 1 9.34 ? C1B CMX 700 A 1 HETATM 12 C C2B CMX . . . C 3 14.809 -11.836 13.315 1 17.27 ? C2B CMX 700 A 1 HETATM 13 O O2B CMX . . . C 3 14.359 -10.539 13.631 1 17.77 ? O2B CMX 700 A 1 HETATM 14 C C3B CMX . . . C 3 14.074 -12.983 13.977 1 8.43 ? C3B CMX 700 A 1 HETATM 15 O O3B CMX . . . C 3 14.046 -12.778 15.399 1 24.56 ? O3B CMX 700 A 1 HETATM 16 P P3B CMX . . . C 3 12.713 -13.127 16.254 1 39.2 ? P3B CMX 700 A 1 HETATM 17 O O7A CMX . . . C 3 11.552 -12.456 15.65 1 22.53 ? O7A CMX 700 A 1 HETATM 18 O O8A CMX . . . C 3 12.97 -12.869 17.69 1 70.92 ? O8A CMX 700 A 1 HETATM 19 O O9A CMX . . . C 3 12.563 -14.599 16.016 1 34.06 ? O9A CMX 700 A 1 HETATM 20 C C4B CMX . . . C 3 15.049 -14.135 13.67 1 8.34 ? C4B CMX 700 A 1 HETATM 21 O O4B CMX . . . C 3 16.334 -13.508 13.466 1 13.75 ? O4B CMX 700 A 1 HETATM 22 C C5B CMX . . . C 3 14.702 -14.898 12.416 1 9.06 ? C5B CMX 700 A 1 HETATM 23 O O5B CMX . . . C 3 14.391 -13.93 11.419 1 15.3 ? O5B CMX 700 A 1 HETATM 24 P P1A CMX . . . C 3 14.737 -14.377 9.931 1 11.1 ? P1A CMX 700 A 1 HETATM 25 O O1A CMX . . . C 3 13.916 -15.513 9.466 1 19.84 ? O1A CMX 700 A 1 HETATM 26 O O2A CMX . . . C 3 16.219 -14.58 9.845 1 8.53 ? O2A CMX 700 A 1 HETATM 27 O O3A CMX . . . C 3 14.474 -13.011 9.132 1 10.13 ? O3A CMX 700 A 1 HETATM 28 P P2A CMX . . . C 3 13.044 -12.674 8.445 1 10.58 ? P2A CMX 700 A 1 HETATM 29 O O4A CMX . . . C 3 12.944 -13.332 7.139 1 13.48 ? O4A CMX 700 A 1 HETATM 30 O O5A CMX . . . C 3 11.967 -12.725 9.437 1 8.1 ? O5A CMX 700 A 1 HETATM 31 O O6A CMX . . . C 3 13.357 -11.084 8.214 1 7.51 ? O6A CMX 700 A 1 HETATM 32 C CBP CMX . . . C 3 14.702 -9.203 7.551 1 7.4 ? CBP CMX 700 A 1 HETATM 33 C CCP CMX . . . C 3 14.21 -10.603 7.177 1 7 ? CCP CMX 700 A 1 HETATM 34 C CDP CMX . . . C 3 15.393 -8.582 6.32 1 3.24 ? CDP CMX 700 A 1 HETATM 35 C CEP CMX . . . C 3 13.436 -8.399 7.94 1 4.73 ? CEP CMX 700 A 1 HETATM 36 C CAP CMX . . . C 3 15.638 -9.345 8.763 1 4.94 ? CAP CMX 700 A 1 HETATM 37 O OAP CMX . . . C 3 16.855 -10.005 8.419 1 7.88 ? OAP CMX 700 A 1 HETATM 38 C C9P CMX . . . C 3 15.986 -7.985 9.394 1 10.18 ? C9P CMX 700 A 1 HETATM 39 O O9P CMX . . . C 3 15.297 -7.462 10.286 1 13.57 ? O9P CMX 700 A 1 HETATM 40 N N8P CMX . . . C 3 17.082 -7.4 8.953 1 4.73 ? N8P CMX 700 A 1 HETATM 41 C C7P CMX . . . C 3 17.53 -6.067 9.425 1 12.55 ? C7P CMX 700 A 1 HETATM 42 C C6P CMX . . . C 3 16.775 -5 8.638 1 3.89 ? C6P CMX 700 A 1 HETATM 43 C C5P CMX . . . C 3 17.235 -4.838 7.196 1 7.42 ? C5P CMX 700 A 1 HETATM 44 O O5P CMX . . . C 3 18.452 -4.813 6.918 1 6.76 ? O5P CMX 700 A 1 HETATM 45 N N4P CMX . . . C 3 16.285 -4.667 6.264 1 13.95 ? N4P CMX 700 A 1 HETATM 46 C C3P CMX . . . C 3 16.686 -4.448 4.879 1 12.85 ? C3P CMX 700 A 1 HETATM 47 C C2P CMX . . . C 3 16.385 -5.653 3.961 1 6.14 ? C2P CMX 700 A 1 HETATM 48 C C1 CMX . . . C 3 16.614 -5.373 2.421 1 3 ? C1 CMX 700 A 1 HETATM 49 C C2 CMX . . . C 3 15.588 -4.418 1.915 1 6.29 ? C2 CMX 700 A 1 HETATM 50 O O21 CMX . . . C 3 14.41 -4.681 1.887 1 5.08 ? O21 CMX 700 A 1 HETATM 51 O O22 CMX . . . C 3 16.032 -3.275 1.548 1 3.96 ? O22 CMX 700 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #