data_1CSX # _model_server_result.job_id 7gSlxk3XOOy9vDA1QIvmXA _model_server_result.datetime_utc '2025-08-02 16:48:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1csx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":104}' # _entry.id 1CSX # _exptl.entry_id 1CSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CSX _cell.length_a 36.5 _cell.length_b 36.5 _cell.length_c 136.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1CSX _atom_sites.fract_transf_matrix[1][1] 0.027397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 117 117 SO4 SO4 . C 3 HEC A 1 104 104 HEC HEM . D 4 HOH A 1 106 106 HOH HOH . D 4 HOH A 2 107 107 HOH HOH . D 4 HOH A 3 108 108 HOH HOH . D 4 HOH A 4 109 109 HOH HOH . D 4 HOH A 5 110 110 HOH HOH . D 4 HOH A 6 112 112 HOH HOH . D 4 HOH A 7 113 113 HOH HOH . D 4 HOH A 8 116 116 HOH HOH . D 4 HOH A 9 118 118 HOH HOH . D 4 HOH A 10 121 121 HOH HOH . D 4 HOH A 11 122 122 HOH HOH . D 4 HOH A 12 123 123 HOH HOH . D 4 HOH A 13 124 124 HOH HOH . D 4 HOH A 14 125 125 HOH HOH . D 4 HOH A 15 126 126 HOH HOH . D 4 HOH A 16 127 127 HOH HOH . D 4 HOH A 17 129 129 HOH HOH . D 4 HOH A 18 130 130 HOH HOH . D 4 HOH A 19 132 132 HOH HOH . D 4 HOH A 20 133 133 HOH HOH . D 4 HOH A 21 135 135 HOH HOH . D 4 HOH A 22 136 136 HOH HOH . D 4 HOH A 23 137 137 HOH HOH . D 4 HOH A 24 138 138 HOH HOH . D 4 HOH A 25 140 140 HOH HOH . D 4 HOH A 26 141 141 HOH HOH . D 4 HOH A 27 142 142 HOH HOH . D 4 HOH A 28 144 144 HOH HOH . D 4 HOH A 29 145 145 HOH HOH . D 4 HOH A 30 149 149 HOH HOH . D 4 HOH A 31 150 150 HOH HOH . D 4 HOH A 32 151 151 HOH HOH . D 4 HOH A 33 152 152 HOH HOH . D 4 HOH A 34 153 153 HOH HOH . D 4 HOH A 35 154 154 HOH HOH . D 4 HOH A 36 156 156 HOH HOH . D 4 HOH A 37 158 158 HOH HOH . D 4 HOH A 38 160 160 HOH HOH . D 4 HOH A 39 163 163 HOH HOH . D 4 HOH A 40 166 166 HOH HOH . D 4 HOH A 41 167 167 HOH HOH . D 4 HOH A 42 168 168 HOH HOH . D 4 HOH A 43 172 172 HOH HOH . D 4 HOH A 44 173 173 HOH HOH . D 4 HOH A 45 174 174 HOH HOH . D 4 HOH A 46 175 175 HOH HOH . D 4 HOH A 47 176 176 HOH HOH . D 4 HOH A 48 177 177 HOH HOH . D 4 HOH A 49 179 179 HOH HOH . D 4 HOH A 50 181 181 HOH HOH . D 4 HOH A 51 182 182 HOH HOH . D 4 HOH A 52 183 183 HOH HOH . D 4 HOH A 53 188 188 HOH HOH . D 4 HOH A 54 189 189 HOH HOH . D 4 HOH A 55 191 191 HOH HOH . D 4 HOH A 56 192 192 HOH HOH . D 4 HOH A 57 194 194 HOH HOH . D 4 HOH A 58 195 195 HOH HOH . D 4 HOH A 59 196 196 HOH HOH . D 4 HOH A 60 197 197 HOH HOH . D 4 HOH A 61 198 198 HOH HOH . D 4 HOH A 62 201 201 HOH HOH . D 4 HOH A 63 202 202 HOH HOH . D 4 HOH A 64 204 204 HOH HOH . D 4 HOH A 65 206 206 HOH HOH . D 4 HOH A 66 208 208 HOH HOH . D 4 HOH A 67 214 214 HOH HOH . D 4 HOH A 68 215 215 HOH HOH . D 4 HOH A 69 217 217 HOH HOH . D 4 HOH A 70 218 218 HOH HOH . D 4 HOH A 71 221 221 HOH HOH . D 4 HOH A 72 243 243 HOH HOH . D 4 HOH A 73 249 249 HOH HOH . D 4 HOH A 74 258 258 HOH HOH . D 4 HOH A 75 259 259 HOH HOH . D 4 HOH A 76 260 260 HOH HOH . D 4 HOH A 77 261 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 3 2.819 21.042 13.108 1 5.73 ? FE HEC 104 A 1 HETATM 2 C CHA HEC . . . C 3 5.083 18.774 14.189 1 7.42 ? CHA HEC 104 A 1 HETATM 3 C CHB HEC . . . C 3 3.923 20.673 9.958 1 4.13 ? CHB HEC 104 A 1 HETATM 4 C CHC HEC . . . C 3 0.055 22.767 11.997 1 4 ? CHC HEC 104 A 1 HETATM 5 C CHD HEC . . . C 3 2.101 21.869 16.3 1 5.91 ? CHD HEC 104 A 1 HETATM 6 N NA HEC . . . C 3 4.278 19.993 12.248 1 5.56 ? NA HEC 104 A 1 HETATM 7 C C1A HEC . . . C 3 5.05 19.024 12.855 1 6.62 ? C1A HEC 104 A 1 HETATM 8 C C2A HEC . . . C 3 5.766 18.253 11.841 1 5.88 ? C2A HEC 104 A 1 HETATM 9 C C3A HEC . . . C 3 5.453 18.765 10.641 1 5.58 ? C3A HEC 104 A 1 HETATM 10 C C4A HEC . . . C 3 4.553 19.867 10.849 1 5.5 ? C4A HEC 104 A 1 HETATM 11 C CMA HEC . . . C 3 6.022 18.269 9.276 1 4 ? CMA HEC 104 A 1 HETATM 12 C CAA HEC . . . C 3 6.758 17.14 12.244 1 5.6 ? CAA HEC 104 A 1 HETATM 13 C CBA HEC . . . C 3 8.157 17.731 12.61 1 4.4 ? CBA HEC 104 A 1 HETATM 14 C CGA HEC . . . C 3 9.381 16.903 12.449 1 4.36 ? CGA HEC 104 A 1 HETATM 15 O O1A HEC . . . C 3 10.485 17.542 12.565 1 5.15 ? O1A HEC 104 A 1 HETATM 16 O O2A HEC . . . C 3 9.452 15.642 12.323 1 4 ? O2A HEC 104 A 1 HETATM 17 N NB HEC . . . C 3 2.073 21.597 11.3 1 4 ? NB HEC 104 A 1 HETATM 18 C C1B HEC . . . C 3 2.782 21.457 10.12 1 4.7 ? C1B HEC 104 A 1 HETATM 19 C C2B HEC . . . C 3 2.077 22.2 9.074 1 4.66 ? C2B HEC 104 A 1 HETATM 20 C C3B HEC . . . C 3 1.011 22.785 9.647 1 4.19 ? C3B HEC 104 A 1 HETATM 21 C C4B HEC . . . C 3 1.012 22.414 11.065 1 4 ? C4B HEC 104 A 1 HETATM 22 C CMB HEC . . . C 3 2.598 22.308 7.616 1 4 ? CMB HEC 104 A 1 HETATM 23 C CAB HEC . . . C 3 -0.064 23.668 9.049 1 6.45 ? CAB HEC 104 A 1 HETATM 24 C CBB HEC . . . C 3 -1.188 23.019 8.217 1 9.79 ? CBB HEC 104 A 1 HETATM 25 N NC HEC . . . C 3 1.308 22.034 13.988 1 4.92 ? NC HEC 104 A 1 HETATM 26 C C1C HEC . . . C 3 0.316 22.786 13.354 1 5.3 ? C1C HEC 104 A 1 HETATM 27 C C2C HEC . . . C 3 -0.366 23.592 14.34 1 5.76 ? C2C HEC 104 A 1 HETATM 28 C C3C HEC . . . C 3 0.184 23.323 15.53 1 4.44 ? C3C HEC 104 A 1 HETATM 29 C C4C HEC . . . C 3 1.257 22.382 15.322 1 6.26 ? C4C HEC 104 A 1 HETATM 30 C CMC HEC . . . C 3 -1.555 24.521 13.993 1 4 ? CMC HEC 104 A 1 HETATM 31 C CAC HEC . . . C 3 -0.178 23.896 16.931 1 6.36 ? CAC HEC 104 A 1 HETATM 32 C CBC HEC . . . C 3 -1.695 23.813 17.338 1 4 ? CBC HEC 104 A 1 HETATM 33 N ND HEC . . . C 3 3.469 20.435 14.936 1 5.66 ? ND HEC 104 A 1 HETATM 34 C C1D HEC . . . C 3 3.046 20.884 16.145 1 6.28 ? C1D HEC 104 A 1 HETATM 35 C C2D HEC . . . C 3 3.67 20.076 17.181 1 6.79 ? C2D HEC 104 A 1 HETATM 36 C C3D HEC . . . C 3 4.502 19.2 16.583 1 7.19 ? C3D HEC 104 A 1 HETATM 37 C C4D HEC . . . C 3 4.35 19.412 15.162 1 6.22 ? C4D HEC 104 A 1 HETATM 38 C CMD HEC . . . C 3 3.414 20.194 18.711 1 7.52 ? CMD HEC 104 A 1 HETATM 39 C CAD HEC . . . C 3 5.41 18.125 17.231 1 4.74 ? CAD HEC 104 A 1 HETATM 40 C CBD HEC . . . C 3 4.756 16.734 17.407 1 5.8 ? CBD HEC 104 A 1 HETATM 41 C CGD HEC . . . C 3 5.362 15.727 18.288 1 5.44 ? CGD HEC 104 A 1 HETATM 42 O O1D HEC . . . C 3 6.484 15.99 18.807 1 4 ? O1D HEC 104 A 1 HETATM 43 O O2D HEC . . . C 3 4.746 14.603 18.5 1 6.42 ? O2D HEC 104 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #