data_1CT5 # _model_server_result.job_id zdE1H88ZidQVBgzRzGybEA _model_server_result.datetime_utc '2024-11-08 18:14:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ct5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":258}' # _entry.id 1CT5 # _exptl.entry_id 1CT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CT5 _cell.length_a 49.052 _cell.length_b 65.823 _cell.length_c 93.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 48 A LYS 49 1_555 B C4A PLP . A PLP 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale2 A C LEU 179 A LEU 180 1_555 A N MSE 180 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale3 A C MSE 180 A MSE 181 1_555 A N THR 181 A THR 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale4 A C SER 219 A SER 220 1_555 A N MSE 220 A MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C MSE 220 A MSE 221 1_555 A N GLY 221 A GLY 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale6 A C GLY 221 A GLY 222 1_555 A N MSE 222 A MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale7 A C MSE 222 A MSE 223 1_555 A N SER 223 A SER 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1CT5 _atom_sites.fract_transf_matrix[1][1] 0.020387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 258 258 PLP PLP . C 3 HOH A 1 259 1 HOH HOH . C 3 HOH A 2 260 2 HOH HOH . C 3 HOH A 3 261 3 HOH HOH . C 3 HOH A 4 262 4 HOH HOH . C 3 HOH A 5 263 5 HOH HOH . C 3 HOH A 6 264 7 HOH HOH . C 3 HOH A 7 265 8 HOH HOH . C 3 HOH A 8 266 9 HOH HOH . C 3 HOH A 9 267 10 HOH HOH . C 3 HOH A 10 268 11 HOH HOH . C 3 HOH A 11 269 12 HOH HOH . C 3 HOH A 12 270 13 HOH HOH . C 3 HOH A 13 271 14 HOH HOH . C 3 HOH A 14 272 15 HOH HOH . C 3 HOH A 15 273 16 HOH HOH . C 3 HOH A 16 274 17 HOH HOH . C 3 HOH A 17 275 18 HOH HOH . C 3 HOH A 18 276 19 HOH HOH . C 3 HOH A 19 277 20 HOH HOH . C 3 HOH A 20 278 21 HOH HOH . C 3 HOH A 21 279 22 HOH HOH . C 3 HOH A 22 280 23 HOH HOH . C 3 HOH A 23 281 24 HOH HOH . C 3 HOH A 24 282 25 HOH HOH . C 3 HOH A 25 283 26 HOH HOH . C 3 HOH A 26 284 27 HOH HOH . C 3 HOH A 27 285 28 HOH HOH . C 3 HOH A 28 286 29 HOH HOH . C 3 HOH A 29 287 30 HOH HOH . C 3 HOH A 30 288 31 HOH HOH . C 3 HOH A 31 289 32 HOH HOH . C 3 HOH A 32 290 33 HOH HOH . C 3 HOH A 33 291 34 HOH HOH . C 3 HOH A 34 292 35 HOH HOH . C 3 HOH A 35 293 36 HOH HOH . C 3 HOH A 36 294 37 HOH HOH . C 3 HOH A 37 295 38 HOH HOH . C 3 HOH A 38 296 39 HOH HOH . C 3 HOH A 39 297 40 HOH HOH . C 3 HOH A 40 298 41 HOH HOH . C 3 HOH A 41 299 42 HOH HOH . C 3 HOH A 42 300 43 HOH HOH . C 3 HOH A 43 301 44 HOH HOH . C 3 HOH A 44 302 45 HOH HOH . C 3 HOH A 45 303 46 HOH HOH . C 3 HOH A 46 304 47 HOH HOH . C 3 HOH A 47 305 48 HOH HOH . C 3 HOH A 48 306 49 HOH HOH . C 3 HOH A 49 307 50 HOH HOH . C 3 HOH A 50 308 51 HOH HOH . C 3 HOH A 51 309 52 HOH HOH . C 3 HOH A 52 310 53 HOH HOH . C 3 HOH A 53 311 54 HOH HOH . C 3 HOH A 54 312 55 HOH HOH . C 3 HOH A 55 313 56 HOH HOH . C 3 HOH A 56 314 57 HOH HOH . C 3 HOH A 57 315 58 HOH HOH . C 3 HOH A 58 316 59 HOH HOH . C 3 HOH A 59 317 60 HOH HOH . C 3 HOH A 60 318 61 HOH HOH . C 3 HOH A 61 319 62 HOH HOH . C 3 HOH A 62 320 63 HOH HOH . C 3 HOH A 63 321 64 HOH HOH . C 3 HOH A 64 322 65 HOH HOH . C 3 HOH A 65 323 66 HOH HOH . C 3 HOH A 66 324 67 HOH HOH . C 3 HOH A 67 325 68 HOH HOH . C 3 HOH A 68 326 69 HOH HOH . C 3 HOH A 69 327 71 HOH HOH . C 3 HOH A 70 328 72 HOH HOH . C 3 HOH A 71 329 73 HOH HOH . C 3 HOH A 72 330 74 HOH HOH . C 3 HOH A 73 331 75 HOH HOH . C 3 HOH A 74 332 77 HOH HOH . C 3 HOH A 75 333 78 HOH HOH . C 3 HOH A 76 334 79 HOH HOH . C 3 HOH A 77 335 80 HOH HOH . C 3 HOH A 78 336 81 HOH HOH . C 3 HOH A 79 337 82 HOH HOH . C 3 HOH A 80 338 83 HOH HOH . C 3 HOH A 81 339 84 HOH HOH . C 3 HOH A 82 340 85 HOH HOH . C 3 HOH A 83 341 86 HOH HOH . C 3 HOH A 84 342 87 HOH HOH . C 3 HOH A 85 343 88 HOH HOH . C 3 HOH A 86 344 89 HOH HOH . C 3 HOH A 87 345 90 HOH HOH . C 3 HOH A 88 346 91 HOH HOH . C 3 HOH A 89 347 92 HOH HOH . C 3 HOH A 90 348 93 HOH HOH . C 3 HOH A 91 349 94 HOH HOH . C 3 HOH A 92 350 95 HOH HOH . C 3 HOH A 93 351 96 HOH HOH . C 3 HOH A 94 352 97 HOH HOH . C 3 HOH A 95 353 98 HOH HOH . C 3 HOH A 96 354 99 HOH HOH . C 3 HOH A 97 355 100 HOH HOH . C 3 HOH A 98 356 101 HOH HOH . C 3 HOH A 99 357 102 HOH HOH . C 3 HOH A 100 358 103 HOH HOH . C 3 HOH A 101 359 104 HOH HOH . C 3 HOH A 102 360 105 HOH HOH . C 3 HOH A 103 361 106 HOH HOH . C 3 HOH A 104 362 107 HOH HOH . C 3 HOH A 105 363 108 HOH HOH . C 3 HOH A 106 364 109 HOH HOH . C 3 HOH A 107 365 110 HOH HOH . C 3 HOH A 108 366 111 HOH HOH . C 3 HOH A 109 367 112 HOH HOH . C 3 HOH A 110 368 113 HOH HOH . C 3 HOH A 111 369 114 HOH HOH . C 3 HOH A 112 370 115 HOH HOH . C 3 HOH A 113 371 116 HOH HOH . C 3 HOH A 114 372 117 HOH HOH . C 3 HOH A 115 373 118 HOH HOH . C 3 HOH A 116 374 119 HOH HOH . C 3 HOH A 117 375 120 HOH HOH . C 3 HOH A 118 376 121 HOH HOH . C 3 HOH A 119 377 122 HOH HOH . C 3 HOH A 120 378 123 HOH HOH . C 3 HOH A 121 379 125 HOH HOH . C 3 HOH A 122 380 126 HOH HOH . C 3 HOH A 123 381 127 HOH HOH . C 3 HOH A 124 382 128 HOH HOH . C 3 HOH A 125 383 129 HOH HOH . C 3 HOH A 126 384 130 HOH HOH . C 3 HOH A 127 385 131 HOH HOH . C 3 HOH A 128 386 132 HOH HOH . C 3 HOH A 129 387 133 HOH HOH . C 3 HOH A 130 388 134 HOH HOH . C 3 HOH A 131 389 135 HOH HOH . C 3 HOH A 132 390 136 HOH HOH . C 3 HOH A 133 391 137 HOH HOH . C 3 HOH A 134 392 138 HOH HOH . C 3 HOH A 135 393 139 HOH HOH . C 3 HOH A 136 394 140 HOH HOH . C 3 HOH A 137 395 141 HOH HOH . C 3 HOH A 138 396 142 HOH HOH . C 3 HOH A 139 397 143 HOH HOH . C 3 HOH A 140 398 144 HOH HOH . C 3 HOH A 141 399 145 HOH HOH . C 3 HOH A 142 400 146 HOH HOH . C 3 HOH A 143 401 147 HOH HOH . C 3 HOH A 144 402 148 HOH HOH . C 3 HOH A 145 403 149 HOH HOH . C 3 HOH A 146 404 150 HOH HOH . C 3 HOH A 147 405 151 HOH HOH . C 3 HOH A 148 406 152 HOH HOH . C 3 HOH A 149 407 153 HOH HOH . C 3 HOH A 150 408 154 HOH HOH . C 3 HOH A 151 409 156 HOH HOH . C 3 HOH A 152 410 157 HOH HOH . C 3 HOH A 153 411 158 HOH HOH . C 3 HOH A 154 412 159 HOH HOH . C 3 HOH A 155 413 161 HOH HOH . C 3 HOH A 156 414 162 HOH HOH . C 3 HOH A 157 415 163 HOH HOH . C 3 HOH A 158 416 164 HOH HOH . C 3 HOH A 159 417 165 HOH HOH . C 3 HOH A 160 418 166 HOH HOH . C 3 HOH A 161 419 167 HOH HOH . C 3 HOH A 162 420 168 HOH HOH . C 3 HOH A 163 421 169 HOH HOH . C 3 HOH A 164 422 170 HOH HOH . C 3 HOH A 165 423 171 HOH HOH . C 3 HOH A 166 424 172 HOH HOH . C 3 HOH A 167 425 173 HOH HOH . C 3 HOH A 168 426 174 HOH HOH . C 3 HOH A 169 427 175 HOH HOH . C 3 HOH A 170 428 177 HOH HOH . C 3 HOH A 171 429 178 HOH HOH . C 3 HOH A 172 430 179 HOH HOH . C 3 HOH A 173 431 180 HOH HOH . C 3 HOH A 174 432 181 HOH HOH . C 3 HOH A 175 433 182 HOH HOH . C 3 HOH A 176 434 183 HOH HOH . C 3 HOH A 177 435 185 HOH HOH . C 3 HOH A 178 436 188 HOH HOH . C 3 HOH A 179 437 189 HOH HOH . C 3 HOH A 180 438 191 HOH HOH . C 3 HOH A 181 439 192 HOH HOH . C 3 HOH A 182 440 193 HOH HOH . C 3 HOH A 183 441 194 HOH HOH . C 3 HOH A 184 442 195 HOH HOH . C 3 HOH A 185 443 196 HOH HOH . C 3 HOH A 186 444 200 HOH HOH . C 3 HOH A 187 445 201 HOH HOH . C 3 HOH A 188 446 202 HOH HOH . C 3 HOH A 189 447 203 HOH HOH . C 3 HOH A 190 448 204 HOH HOH . C 3 HOH A 191 449 206 HOH HOH . C 3 HOH A 192 450 207 HOH HOH . C 3 HOH A 193 451 208 HOH HOH . C 3 HOH A 194 452 209 HOH HOH . C 3 HOH A 195 453 210 HOH HOH . C 3 HOH A 196 454 213 HOH HOH . C 3 HOH A 197 455 216 HOH HOH . C 3 HOH A 198 456 218 HOH HOH . C 3 HOH A 199 457 221 HOH HOH . C 3 HOH A 200 458 222 HOH HOH . C 3 HOH A 201 459 223 HOH HOH . C 3 HOH A 202 460 224 HOH HOH . C 3 HOH A 203 461 225 HOH HOH . C 3 HOH A 204 462 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 19.315 25.36 16.341 1 16.24 ? N1 PLP 258 A 1 HETATM 2 C C2 PLP . . . B 2 20.346 25.037 17.168 1 18.83 ? C2 PLP 258 A 1 HETATM 3 C C2A PLP . . . B 2 20.977 26.036 18.201 1 18.37 ? C2A PLP 258 A 1 HETATM 4 C C3 PLP . . . B 2 20.817 23.701 17.138 1 19.82 ? C3 PLP 258 A 1 HETATM 5 O O3 PLP . . . B 2 21.852 23.299 17.939 1 20.03 ? O3 PLP 258 A 1 HETATM 6 C C4 PLP . . . B 2 20.257 22.789 16.215 1 21.79 ? C4 PLP 258 A 1 HETATM 7 C C4A PLP . . . B 2 20.925 21.355 16.22 1 23.43 ? C4A PLP 258 A 1 HETATM 8 C C5 PLP . . . B 2 19.255 23.201 15.323 1 21.26 ? C5 PLP 258 A 1 HETATM 9 C C6 PLP . . . B 2 18.782 24.469 15.399 1 18.06 ? C6 PLP 258 A 1 HETATM 10 C C5A PLP . . . B 2 18.568 22.139 14.297 1 22.87 ? C5A PLP 258 A 1 HETATM 11 O O4P PLP . . . B 2 17.816 21.115 15.112 1 24.48 ? O4P PLP 258 A 1 HETATM 12 P P PLP . . . B 2 16.781 20.075 14.285 1 23.55 ? P PLP 258 A 1 HETATM 13 O O1P PLP . . . B 2 16.076 20.86 13.217 1 20.36 ? O1P PLP 258 A 1 HETATM 14 O O2P PLP . . . B 2 15.843 19.49 15.344 1 23.54 ? O2P PLP 258 A 1 HETATM 15 O O3P PLP . . . B 2 17.792 19.115 13.752 1 19.85 ? O3P PLP 258 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #