data_1CTM # _model_server_result.job_id J8FhjX-D_a6bi48fI6DEFQ _model_server_result.datetime_utc '2025-01-02 17:48:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ctm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":253}' # _entry.id 1CTM # _exptl.entry_id 1CTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CTM _cell.length_a 79.2 _cell.length_b 81.9 _cell.length_c 46.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 21 A CYS 21 1_555 B CAB HEC . A HEC 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 A SG CYS 24 A CYS 24 1_555 B CAC HEC . A HEC 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? metalc ? metalc1 A N TYR 1 A TYR 1 1_555 B FE HEC . A HEC 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 B FE HEC . A HEC 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1CTM _atom_sites.fract_transf_matrix[1][1] 0.012626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 253 253 HEC HEM . C 3 HOH A 1 254 1 HOH HOH . C 3 HOH A 2 255 2 HOH HOH . C 3 HOH A 3 256 3 HOH HOH . C 3 HOH A 4 257 4 HOH HOH . C 3 HOH A 5 258 5 HOH HOH . C 3 HOH A 6 259 6 HOH HOH . C 3 HOH A 7 260 7 HOH HOH . C 3 HOH A 8 261 8 HOH HOH . C 3 HOH A 9 262 9 HOH HOH . C 3 HOH A 10 263 10 HOH HOH . C 3 HOH A 11 264 11 HOH HOH . C 3 HOH A 12 265 12 HOH HOH . C 3 HOH A 13 266 13 HOH HOH . C 3 HOH A 14 267 14 HOH HOH . C 3 HOH A 15 268 15 HOH HOH . C 3 HOH A 16 269 16 HOH HOH . C 3 HOH A 17 270 17 HOH HOH . C 3 HOH A 18 271 18 HOH HOH . C 3 HOH A 19 272 19 HOH HOH . C 3 HOH A 20 273 21 HOH HOH . C 3 HOH A 21 274 22 HOH HOH . C 3 HOH A 22 275 23 HOH HOH . C 3 HOH A 23 276 24 HOH HOH . C 3 HOH A 24 277 25 HOH HOH . C 3 HOH A 25 278 26 HOH HOH . C 3 HOH A 26 279 27 HOH HOH . C 3 HOH A 27 280 28 HOH HOH . C 3 HOH A 28 281 29 HOH HOH . C 3 HOH A 29 282 30 HOH HOH . C 3 HOH A 30 283 31 HOH HOH . C 3 HOH A 31 284 32 HOH HOH . C 3 HOH A 32 285 33 HOH HOH . C 3 HOH A 33 286 34 HOH HOH . C 3 HOH A 34 287 35 HOH HOH . C 3 HOH A 35 288 36 HOH HOH . C 3 HOH A 36 289 37 HOH HOH . C 3 HOH A 37 290 38 HOH HOH . C 3 HOH A 38 291 39 HOH HOH . C 3 HOH A 39 292 40 HOH HOH . C 3 HOH A 40 293 41 HOH HOH . C 3 HOH A 41 294 42 HOH HOH . C 3 HOH A 42 295 43 HOH HOH . C 3 HOH A 43 296 44 HOH HOH . C 3 HOH A 44 297 45 HOH HOH . C 3 HOH A 45 298 46 HOH HOH . C 3 HOH A 46 299 47 HOH HOH . C 3 HOH A 47 300 48 HOH HOH . C 3 HOH A 48 301 49 HOH HOH . C 3 HOH A 49 302 50 HOH HOH . C 3 HOH A 50 303 51 HOH HOH . C 3 HOH A 51 304 52 HOH HOH . C 3 HOH A 52 305 53 HOH HOH . C 3 HOH A 53 306 54 HOH HOH . C 3 HOH A 54 307 55 HOH HOH . C 3 HOH A 55 308 56 HOH HOH . C 3 HOH A 56 309 57 HOH HOH . C 3 HOH A 57 310 58 HOH HOH . C 3 HOH A 58 311 59 HOH HOH . C 3 HOH A 59 312 60 HOH HOH . C 3 HOH A 60 313 61 HOH HOH . C 3 HOH A 61 314 62 HOH HOH . C 3 HOH A 62 315 63 HOH HOH . C 3 HOH A 63 316 64 HOH HOH . C 3 HOH A 64 317 65 HOH HOH . C 3 HOH A 65 318 66 HOH HOH . C 3 HOH A 66 319 67 HOH HOH . C 3 HOH A 67 320 69 HOH HOH . C 3 HOH A 68 321 70 HOH HOH . C 3 HOH A 69 322 71 HOH HOH . C 3 HOH A 70 323 72 HOH HOH . C 3 HOH A 71 324 73 HOH HOH . C 3 HOH A 72 325 74 HOH HOH . C 3 HOH A 73 326 75 HOH HOH . C 3 HOH A 74 327 76 HOH HOH . C 3 HOH A 75 328 77 HOH HOH . C 3 HOH A 76 329 78 HOH HOH . C 3 HOH A 77 330 79 HOH HOH . C 3 HOH A 78 331 80 HOH HOH . C 3 HOH A 79 332 81 HOH HOH . C 3 HOH A 80 333 82 HOH HOH . C 3 HOH A 81 334 83 HOH HOH . C 3 HOH A 82 335 84 HOH HOH . C 3 HOH A 83 336 85 HOH HOH . C 3 HOH A 84 337 86 HOH HOH . C 3 HOH A 85 338 87 HOH HOH . C 3 HOH A 86 339 88 HOH HOH . C 3 HOH A 87 340 89 HOH HOH . C 3 HOH A 88 341 90 HOH HOH . C 3 HOH A 89 342 91 HOH HOH . C 3 HOH A 90 343 92 HOH HOH . C 3 HOH A 91 344 93 HOH HOH . C 3 HOH A 92 345 94 HOH HOH . C 3 HOH A 93 346 95 HOH HOH . C 3 HOH A 94 347 96 HOH HOH . C 3 HOH A 95 348 97 HOH HOH . C 3 HOH A 96 349 98 HOH HOH . C 3 HOH A 97 350 99 HOH HOH . C 3 HOH A 98 351 100 HOH HOH . C 3 HOH A 99 352 101 HOH HOH . C 3 HOH A 100 353 102 HOH HOH . C 3 HOH A 101 354 103 HOH HOH . C 3 HOH A 102 355 104 HOH HOH . C 3 HOH A 103 356 105 HOH HOH . C 3 HOH A 104 357 106 HOH HOH . C 3 HOH A 105 358 107 HOH HOH . C 3 HOH A 106 359 108 HOH HOH . C 3 HOH A 107 360 109 HOH HOH . C 3 HOH A 108 361 110 HOH HOH . C 3 HOH A 109 362 111 HOH HOH . C 3 HOH A 110 363 112 HOH HOH . C 3 HOH A 111 364 113 HOH HOH . C 3 HOH A 112 365 114 HOH HOH . C 3 HOH A 113 366 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 89.168 81.743 -6.16 1 27.11 ? FE HEC 253 A 1 HETATM 2 C CHA HEC . . . B 2 88.663 84.091 -8.552 1 31.89 ? CHA HEC 253 A 1 HETATM 3 C CHB HEC . . . B 2 85.894 81.629 -5.522 1 26.49 ? CHB HEC 253 A 1 HETATM 4 C CHC HEC . . . B 2 89.656 79.086 -4.081 1 27.35 ? CHC HEC 253 A 1 HETATM 5 C CHD HEC . . . B 2 92.49 82.189 -6.383 1 29.37 ? CHD HEC 253 A 1 HETATM 6 N NA HEC . . . B 2 87.61 82.613 -6.921 1 27.58 ? NA HEC 253 A 1 HETATM 7 C C1A HEC . . . B 2 87.544 83.529 -7.949 1 31.65 ? C1A HEC 253 A 1 HETATM 8 C C2A HEC . . . B 2 86.175 83.879 -8.256 1 28.07 ? C2A HEC 253 A 1 HETATM 9 C C3A HEC . . . B 2 85.423 83.223 -7.387 1 26.48 ? C3A HEC 253 A 1 HETATM 10 C C4A HEC . . . B 2 86.303 82.45 -6.553 1 25.62 ? C4A HEC 253 A 1 HETATM 11 C CMA HEC . . . B 2 83.915 83.277 -7.312 1 26.33 ? CMA HEC 253 A 1 HETATM 12 C CAA HEC . . . B 2 85.705 84.823 -9.352 1 33.48 ? CAA HEC 253 A 1 HETATM 13 C CBA HEC . . . B 2 85.771 86.283 -8.9 1 34.14 ? CBA HEC 253 A 1 HETATM 14 C CGA HEC . . . B 2 85.219 87.331 -9.846 1 32.36 ? CGA HEC 253 A 1 HETATM 15 O O1A HEC . . . B 2 84.72 88.341 -9.369 1 31.61 ? O1A HEC 253 A 1 HETATM 16 O O2A HEC . . . B 2 85.256 87.156 -11.057 1 36.99 ? O2A HEC 253 A 1 HETATM 17 N NB HEC . . . B 2 88.034 80.626 -5.023 1 24.21 ? NB HEC 253 A 1 HETATM 18 C C1B HEC . . . B 2 86.69 80.767 -4.789 1 24.5 ? C1B HEC 253 A 1 HETATM 19 C C2B HEC . . . B 2 86.201 79.806 -3.786 1 24.73 ? C2B HEC 253 A 1 HETATM 20 C C3B HEC . . . B 2 87.257 79.065 -3.459 1 19.67 ? C3B HEC 253 A 1 HETATM 21 C C4B HEC . . . B 2 88.376 79.558 -4.225 1 25.08 ? C4B HEC 253 A 1 HETATM 22 C CMB HEC . . . B 2 84.8 79.76 -3.17 1 21.94 ? CMB HEC 253 A 1 HETATM 23 C CAB HEC . . . B 2 87.339 78.091 -2.519 1 21.74 ? CAB HEC 253 A 1 HETATM 24 C CBB HEC . . . B 2 86.743 76.717 -2.828 1 22.06 ? CBB HEC 253 A 1 HETATM 25 N NC HEC . . . B 2 90.731 80.812 -5.419 1 27.12 ? NC HEC 253 A 1 HETATM 26 C C1C HEC . . . B 2 90.775 79.676 -4.631 1 29.6 ? C1C HEC 253 A 1 HETATM 27 C C2C HEC . . . B 2 92.143 79.234 -4.346 1 28.54 ? C2C HEC 253 A 1 HETATM 28 C C3C HEC . . . B 2 92.972 80.154 -4.92 1 30.36 ? C3C HEC 253 A 1 HETATM 29 C C4C HEC . . . B 2 92.065 81.126 -5.591 1 29.85 ? C4C HEC 253 A 1 HETATM 30 C CMC HEC . . . B 2 92.526 77.985 -3.553 1 28.83 ? CMC HEC 253 A 1 HETATM 31 C CAC HEC . . . B 2 94.374 80.177 -4.929 1 27.37 ? CAC HEC 253 A 1 HETATM 32 C CBC HEC . . . B 2 95.137 79.005 -5.487 1 25.34 ? CBC HEC 253 A 1 HETATM 33 N ND HEC . . . B 2 90.328 82.904 -7.227 1 26.23 ? ND HEC 253 A 1 HETATM 34 C C1D HEC . . . B 2 91.695 83.021 -7.143 1 28.43 ? C1D HEC 253 A 1 HETATM 35 C C2D HEC . . . B 2 92.21 84.007 -8.069 1 28.88 ? C2D HEC 253 A 1 HETATM 36 C C3D HEC . . . B 2 91.139 84.454 -8.749 1 28.51 ? C3D HEC 253 A 1 HETATM 37 C C4D HEC . . . B 2 89.976 83.79 -8.212 1 28.58 ? C4D HEC 253 A 1 HETATM 38 C CMD HEC . . . B 2 93.65 84.503 -8.238 1 26.62 ? CMD HEC 253 A 1 HETATM 39 C CAD HEC . . . B 2 91.168 85.498 -9.841 1 27.6 ? CAD HEC 253 A 1 HETATM 40 C CBD HEC . . . B 2 91.267 84.941 -11.221 1 30.71 ? CBD HEC 253 A 1 HETATM 41 C CGD HEC . . . B 2 91.278 86.095 -12.183 1 34.23 ? CGD HEC 253 A 1 HETATM 42 O O1D HEC . . . B 2 92.304 86.396 -12.78 1 38.4 ? O1D HEC 253 A 1 HETATM 43 O O2D HEC . . . B 2 90.293 86.794 -12.281 1 39.37 ? O2D HEC 253 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #