data_1CUL
#
_model_server_result.job_id            NF3BS45uNwT3ITKq6Mk0rA 
_model_server_result.datetime_utc      '2024-11-23 06:55:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1003}' 
#
_entry.id    1CUL 
#
_exptl.entry_id    1CUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              257.955 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIPHOSPHATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1CUL 
_cell.length_a            118.2 
_cell.length_b            133.6 
_cell.length_c            70.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CUL 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G O1A 3PO . A 3PO 1003 1_555 I O1P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
covale ? covale2 G PA 3PO . A 3PO 1003 1_555 I O2P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale3 G O2A 3PO . A 3PO 1003 1_555 I P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
metalc ? metalc1 A OD1 ASP 33 A ASP 396 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc2 A OD2 ASP 33 A ASP 396 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc3 A O ILE 34 A ILE 397 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc4 A OD1 ASP 77 A ASP 440 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc5 A OD1 ASP 77 A ASP 440 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? 
metalc ? metalc6 A OD2 ASP 77 A ASP 440 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc7 G O2B 3PO . A 3PO 1003 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc8 G O2G 3PO . A 3PO 1003 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc9 G O5' 3PO . A 3PO 1003 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc10 G O1A 3PO . A 3PO 1003 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc11 E MG MG . A MG 1007 1_555 I O1P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc12 C OG SER 54 C SER 54 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc13 C OG1 THR 190 C THR 204 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc14 N O2B GSP . C GSP 395 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc15 N O2G GSP . C GSP 395 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc16 N O3B GSP . C GSP 395 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? 
metalc ? metalc17 K MG MG . C MG 396 1_555 Q O HOH . C HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc18 K MG MG . C MG 396 1_555 Q O HOH . C HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
#
_chem_comp.formula           'H5 O10 P3' 
_chem_comp.formula_weight    257.955 
_chem_comp.id                3PO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G 3PO doub 38 n n 
PG O2G 3PO sing 39 n n 
PG O3G 3PO sing 40 n n 
PG O3B 3PO sing 41 n n 
O2G HOG2 3PO sing 42 n n 
O3G HOG3 3PO sing 43 n n 
PB O1B 3PO doub 44 n n 
PB O2B 3PO sing 45 n n 
PB O3B 3PO sing 46 n n 
PB O3A 3PO sing 47 n n 
O2B HOB2 3PO sing 48 n n 
PA O1A 3PO doub 49 n n 
PA O2A 3PO sing 50 n n 
PA O3A 3PO sing 51 n n 
PA O5' 3PO sing 52 n n 
O2A HOA2 3PO sing 53 n n 
O5' HO5' 3PO sing 54 n n 
#
_atom_sites.entry_id                     1CUL 
_atom_sites.fract_transf_matrix[1][1]    0.00846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007485 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG A 1 1006 1006 MG MG . 
E 4 MG A 1 1007 1007 MG MG . 
F 5 FOK A 1 1001 1001 FOK FOK . 
G 6 3PO A 1 1003 1003 3PO 3PO . 
H 7 MES A 1 1004 1004 MES MES . 
I 8 103 B 1 1082 1002 103 103 . 
J 7 MES B 1 1083 1005 MES MES . 
K 4 MG C 1 396 396 MG MG . 
L 9 CL C 1 397 397 CL CL . 
M 9 CL C 1 398 398 CL CL . 
N 10 GSP C 1 395 395 GSP GSP . 
O 11 HOH A 1 11 11 HOH HOH . 
O 11 HOH A 2 19 19 HOH HOH . 
O 11 HOH A 3 20 20 HOH HOH . 
O 11 HOH A 4 23 23 HOH HOH . 
O 11 HOH A 5 24 24 HOH HOH . 
O 11 HOH A 6 30 30 HOH HOH . 
O 11 HOH A 7 31 31 HOH HOH . 
O 11 HOH A 8 32 32 HOH HOH . 
O 11 HOH A 9 33 33 HOH HOH . 
O 11 HOH A 10 57 57 HOH HOH . 
O 11 HOH A 11 59 59 HOH HOH . 
O 11 HOH A 12 76 76 HOH HOH . 
O 11 HOH A 13 81 81 HOH HOH . 
O 11 HOH A 14 82 82 HOH HOH . 
P 11 HOH B 1 8 8 HOH HOH . 
P 11 HOH B 2 12 12 HOH HOH . 
P 11 HOH B 3 13 13 HOH HOH . 
P 11 HOH B 4 14 14 HOH HOH . 
P 11 HOH B 5 15 15 HOH HOH . 
P 11 HOH B 6 16 16 HOH HOH . 
P 11 HOH B 7 17 17 HOH HOH . 
P 11 HOH B 8 18 18 HOH HOH . 
P 11 HOH B 9 21 21 HOH HOH . 
P 11 HOH B 10 22 22 HOH HOH . 
P 11 HOH B 11 25 25 HOH HOH . 
P 11 HOH B 12 26 26 HOH HOH . 
P 11 HOH B 13 27 27 HOH HOH . 
P 11 HOH B 14 28 28 HOH HOH . 
P 11 HOH B 15 34 34 HOH HOH . 
P 11 HOH B 16 36 36 HOH HOH . 
P 11 HOH B 17 37 37 HOH HOH . 
P 11 HOH B 18 38 38 HOH HOH . 
P 11 HOH B 19 54 54 HOH HOH . 
P 11 HOH B 20 55 55 HOH HOH . 
P 11 HOH B 21 56 56 HOH HOH . 
P 11 HOH B 22 58 58 HOH HOH . 
P 11 HOH B 23 60 60 HOH HOH . 
P 11 HOH B 24 61 61 HOH HOH . 
P 11 HOH B 25 62 62 HOH HOH . 
P 11 HOH B 26 73 73 HOH HOH . 
P 11 HOH B 27 77 77 HOH HOH . 
P 11 HOH B 28 78 78 HOH HOH . 
P 11 HOH B 29 80 80 HOH HOH . 
P 11 HOH B 30 83 83 HOH HOH . 
P 11 HOH B 31 84 84 HOH HOH . 
P 11 HOH B 32 85 85 HOH HOH . 
P 11 HOH B 33 86 86 HOH HOH . 
Q 11 HOH C 1 399 1 HOH HOH . 
Q 11 HOH C 2 400 2 HOH HOH . 
Q 11 HOH C 3 401 3 HOH HOH . 
Q 11 HOH C 4 402 4 HOH HOH . 
Q 11 HOH C 5 403 5 HOH HOH . 
Q 11 HOH C 6 404 7 HOH HOH . 
Q 11 HOH C 7 405 10 HOH HOH . 
Q 11 HOH C 8 406 29 HOH HOH . 
Q 11 HOH C 9 407 35 HOH HOH . 
Q 11 HOH C 10 408 39 HOH HOH . 
Q 11 HOH C 11 409 40 HOH HOH . 
Q 11 HOH C 12 410 41 HOH HOH . 
Q 11 HOH C 13 411 42 HOH HOH . 
Q 11 HOH C 14 412 43 HOH HOH . 
Q 11 HOH C 15 413 44 HOH HOH . 
Q 11 HOH C 16 414 45 HOH HOH . 
Q 11 HOH C 17 415 46 HOH HOH . 
Q 11 HOH C 18 416 47 HOH HOH . 
Q 11 HOH C 19 417 48 HOH HOH . 
Q 11 HOH C 20 418 49 HOH HOH . 
Q 11 HOH C 21 419 50 HOH HOH . 
Q 11 HOH C 22 420 51 HOH HOH . 
Q 11 HOH C 23 421 52 HOH HOH . 
Q 11 HOH C 24 422 53 HOH HOH . 
Q 11 HOH C 25 423 63 HOH HOH . 
Q 11 HOH C 26 424 65 HOH HOH . 
Q 11 HOH C 27 425 67 HOH HOH . 
Q 11 HOH C 28 426 68 HOH HOH . 
Q 11 HOH C 29 427 69 HOH HOH . 
Q 11 HOH C 30 428 71 HOH HOH . 
Q 11 HOH C 31 429 72 HOH HOH . 
Q 11 HOH C 32 430 74 HOH HOH . 
Q 11 HOH C 33 431 75 HOH HOH . 
Q 11 HOH C 34 432 79 HOH HOH . 
Q 11 HOH C 35 433 88 HOH HOH . 
Q 11 HOH C 36 434 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG 3PO . . . G 6 56.748 -6.134 58.275 1 99.99 ? PG 3PO 1003 A 1 
HETATM 2 O O1G 3PO . . . G 6 57.386 -5.308 59.337 1 97.75 ? O1G 3PO 1003 A 1 
HETATM 3 O O2G 3PO . . . G 6 55.792 -7.206 58.66 1 99.99 ? O2G 3PO 1003 A 1 
HETATM 4 O O3G 3PO . . . G 6 56.054 -5.218 57.334 1 99.99 ? O3G 3PO 1003 A 1 
HETATM 5 P PB 3PO . . . G 6 57.866 -7.824 56.389 1 95.06 ? PB 3PO 1003 A 1 
HETATM 6 O O1B 3PO . . . G 6 58.935 -7.502 55.412 1 94.7 ? O1B 3PO 1003 A 1 
HETATM 7 O O2B 3PO . . . G 6 57.882 -9.135 57.078 1 95.07 ? O2B 3PO 1003 A 1 
HETATM 8 O O3B 3PO . . . G 6 57.832 -6.744 57.429 1 98.47 ? O3B 3PO 1003 A 1 
HETATM 9 P PA 3PO . . . G 6 55.714 -8.526 54.845 0.5 91.98 ? PA 3PO 1003 A 1 
HETATM 10 O O1A 3PO . . . G 6 54.331 -8.548 55.389 0.5 91.87 ? O1A 3PO 1003 A 1 
HETATM 11 O O2A 3PO . . . G 6 55.941 -8.119 53.435 0.5 92 ? O2A 3PO 1003 A 1 
HETATM 12 O O3A 3PO . . . G 6 56.545 -7.657 55.72 1 93.63 ? O3A 3PO 1003 A 1 
HETATM 13 O O5' 3PO . . . G 6 56.353 -9.968 55.064 0.5 91.2 ? O5' 3PO 1003 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#