data_1CUL # _model_server_result.job_id EC127dB2gUS-0rgXNrJ-Jg _model_server_result.datetime_utc '2024-11-23 06:54:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1006}' # _entry.id 1CUL # _exptl.entry_id 1CUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CUL _cell.length_a 118.2 _cell.length_b 133.6 _cell.length_c 70.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CUL _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G O1A 3PO . A 3PO 1003 1_555 I O1P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? covale ? covale2 G PA 3PO . A 3PO 1003 1_555 I O2P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale3 G O2A 3PO . A 3PO 1003 1_555 I P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? metalc ? metalc1 A OD1 ASP 33 A ASP 396 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A OD2 ASP 33 A ASP 396 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc3 A O ILE 34 A ILE 397 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 A OD1 ASP 77 A ASP 440 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A OD1 ASP 77 A ASP 440 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc6 A OD2 ASP 77 A ASP 440 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 G O2B 3PO . A 3PO 1003 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 G O2G 3PO . A 3PO 1003 1_555 D MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc9 G O5' 3PO . A 3PO 1003 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc10 G O1A 3PO . A 3PO 1003 1_555 E MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 E MG MG . A MG 1007 1_555 I O1P 103 . B 103 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc12 C OG SER 54 C SER 54 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc13 C OG1 THR 190 C THR 204 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc14 N O2B GSP . C GSP 395 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc15 N O2G GSP . C GSP 395 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc16 N O3B GSP . C GSP 395 1_555 K MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? metalc ? metalc17 K MG MG . C MG 396 1_555 Q O HOH . C HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc18 K MG MG . C MG 396 1_555 Q O HOH . C HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CUL _atom_sites.fract_transf_matrix[1][1] 0.00846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1006 1006 MG MG . E 4 MG A 1 1007 1007 MG MG . F 5 FOK A 1 1001 1001 FOK FOK . G 6 3PO A 1 1003 1003 3PO 3PO . H 7 MES A 1 1004 1004 MES MES . I 8 103 B 1 1082 1002 103 103 . J 7 MES B 1 1083 1005 MES MES . K 4 MG C 1 396 396 MG MG . L 9 CL C 1 397 397 CL CL . M 9 CL C 1 398 398 CL CL . N 10 GSP C 1 395 395 GSP GSP . O 11 HOH A 1 11 11 HOH HOH . O 11 HOH A 2 19 19 HOH HOH . O 11 HOH A 3 20 20 HOH HOH . O 11 HOH A 4 23 23 HOH HOH . O 11 HOH A 5 24 24 HOH HOH . O 11 HOH A 6 30 30 HOH HOH . O 11 HOH A 7 31 31 HOH HOH . O 11 HOH A 8 32 32 HOH HOH . O 11 HOH A 9 33 33 HOH HOH . O 11 HOH A 10 57 57 HOH HOH . O 11 HOH A 11 59 59 HOH HOH . O 11 HOH A 12 76 76 HOH HOH . O 11 HOH A 13 81 81 HOH HOH . O 11 HOH A 14 82 82 HOH HOH . P 11 HOH B 1 8 8 HOH HOH . P 11 HOH B 2 12 12 HOH HOH . P 11 HOH B 3 13 13 HOH HOH . P 11 HOH B 4 14 14 HOH HOH . P 11 HOH B 5 15 15 HOH HOH . P 11 HOH B 6 16 16 HOH HOH . P 11 HOH B 7 17 17 HOH HOH . P 11 HOH B 8 18 18 HOH HOH . P 11 HOH B 9 21 21 HOH HOH . P 11 HOH B 10 22 22 HOH HOH . P 11 HOH B 11 25 25 HOH HOH . P 11 HOH B 12 26 26 HOH HOH . P 11 HOH B 13 27 27 HOH HOH . P 11 HOH B 14 28 28 HOH HOH . P 11 HOH B 15 34 34 HOH HOH . P 11 HOH B 16 36 36 HOH HOH . P 11 HOH B 17 37 37 HOH HOH . P 11 HOH B 18 38 38 HOH HOH . P 11 HOH B 19 54 54 HOH HOH . P 11 HOH B 20 55 55 HOH HOH . P 11 HOH B 21 56 56 HOH HOH . P 11 HOH B 22 58 58 HOH HOH . P 11 HOH B 23 60 60 HOH HOH . P 11 HOH B 24 61 61 HOH HOH . P 11 HOH B 25 62 62 HOH HOH . P 11 HOH B 26 73 73 HOH HOH . P 11 HOH B 27 77 77 HOH HOH . P 11 HOH B 28 78 78 HOH HOH . P 11 HOH B 29 80 80 HOH HOH . P 11 HOH B 30 83 83 HOH HOH . P 11 HOH B 31 84 84 HOH HOH . P 11 HOH B 32 85 85 HOH HOH . P 11 HOH B 33 86 86 HOH HOH . Q 11 HOH C 1 399 1 HOH HOH . Q 11 HOH C 2 400 2 HOH HOH . Q 11 HOH C 3 401 3 HOH HOH . Q 11 HOH C 4 402 4 HOH HOH . Q 11 HOH C 5 403 5 HOH HOH . Q 11 HOH C 6 404 7 HOH HOH . Q 11 HOH C 7 405 10 HOH HOH . Q 11 HOH C 8 406 29 HOH HOH . Q 11 HOH C 9 407 35 HOH HOH . Q 11 HOH C 10 408 39 HOH HOH . Q 11 HOH C 11 409 40 HOH HOH . Q 11 HOH C 12 410 41 HOH HOH . Q 11 HOH C 13 411 42 HOH HOH . Q 11 HOH C 14 412 43 HOH HOH . Q 11 HOH C 15 413 44 HOH HOH . Q 11 HOH C 16 414 45 HOH HOH . Q 11 HOH C 17 415 46 HOH HOH . Q 11 HOH C 18 416 47 HOH HOH . Q 11 HOH C 19 417 48 HOH HOH . Q 11 HOH C 20 418 49 HOH HOH . Q 11 HOH C 21 419 50 HOH HOH . Q 11 HOH C 22 420 51 HOH HOH . Q 11 HOH C 23 421 52 HOH HOH . Q 11 HOH C 24 422 53 HOH HOH . Q 11 HOH C 25 423 63 HOH HOH . Q 11 HOH C 26 424 65 HOH HOH . Q 11 HOH C 27 425 67 HOH HOH . Q 11 HOH C 28 426 68 HOH HOH . Q 11 HOH C 29 427 69 HOH HOH . Q 11 HOH C 30 428 71 HOH HOH . Q 11 HOH C 31 429 72 HOH HOH . Q 11 HOH C 32 430 74 HOH HOH . Q 11 HOH C 33 431 75 HOH HOH . Q 11 HOH C 34 432 79 HOH HOH . Q 11 HOH C 35 433 88 HOH HOH . Q 11 HOH C 36 434 89 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 56.27 _atom_site.Cartn_y -9.737 _atom_site.Cartn_z 58.672 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1006 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #