data_1CV3 # _model_server_result.job_id 2TQTpNGht9Z17d50z94TWQ _model_server_result.datetime_utc '2024-11-23 12:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 1CV3 # _exptl.entry_id 1CV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CV3 _cell.length_a 60.96 _cell.length_b 60.96 _cell.length_c 96.88 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 1CV3 _atom_sites.fract_transf_matrix[1][1] 0.016404 _atom_sites.fract_transf_matrix[1][2] 0.009471 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 173 0 CL CL . C 2 CL A 1 178 0 CL CL . D 3 HED A 1 170 0 HED HED . E 4 HOH A 1 171 0 HOH HOH . E 4 HOH A 2 172 0 HOH HOH . E 4 HOH A 3 174 0 HOH HOH . E 4 HOH A 4 175 0 HOH HOH . E 4 HOH A 5 176 0 HOH HOH . E 4 HOH A 6 177 0 HOH HOH . E 4 HOH A 7 179 0 HOH HOH . E 4 HOH A 8 180 0 HOH HOH . E 4 HOH A 9 181 0 HOH HOH . E 4 HOH A 10 182 0 HOH HOH . E 4 HOH A 11 183 0 HOH HOH . E 4 HOH A 12 184 0 HOH HOH . E 4 HOH A 13 185 0 HOH HOH . E 4 HOH A 14 186 0 HOH HOH . E 4 HOH A 15 188 0 HOH HOH . E 4 HOH A 16 189 0 HOH HOH . E 4 HOH A 17 190 0 HOH HOH . E 4 HOH A 18 191 0 HOH HOH . E 4 HOH A 19 192 0 HOH HOH . E 4 HOH A 20 193 0 HOH HOH . E 4 HOH A 21 194 0 HOH HOH . E 4 HOH A 22 195 0 HOH HOH . E 4 HOH A 23 196 0 HOH HOH . E 4 HOH A 24 197 0 HOH HOH . E 4 HOH A 25 198 0 HOH HOH . E 4 HOH A 26 200 0 HOH HOH . E 4 HOH A 27 201 0 HOH HOH . E 4 HOH A 28 202 0 HOH HOH . E 4 HOH A 29 203 0 HOH HOH . E 4 HOH A 30 204 0 HOH HOH . E 4 HOH A 31 206 0 HOH HOH . E 4 HOH A 32 207 0 HOH HOH . E 4 HOH A 33 208 0 HOH HOH . E 4 HOH A 34 209 0 HOH HOH . E 4 HOH A 35 210 0 HOH HOH . E 4 HOH A 36 211 0 HOH HOH . E 4 HOH A 37 213 0 HOH HOH . E 4 HOH A 38 214 0 HOH HOH . E 4 HOH A 39 215 0 HOH HOH . E 4 HOH A 40 216 0 HOH HOH . E 4 HOH A 41 217 0 HOH HOH . E 4 HOH A 42 218 0 HOH HOH . E 4 HOH A 43 219 0 HOH HOH . E 4 HOH A 44 220 0 HOH HOH . E 4 HOH A 45 221 0 HOH HOH . E 4 HOH A 46 222 0 HOH HOH . E 4 HOH A 47 223 0 HOH HOH . E 4 HOH A 48 224 0 HOH HOH . E 4 HOH A 49 225 0 HOH HOH . E 4 HOH A 50 226 0 HOH HOH . E 4 HOH A 51 228 0 HOH HOH . E 4 HOH A 52 229 0 HOH HOH . E 4 HOH A 53 230 0 HOH HOH . E 4 HOH A 54 231 0 HOH HOH . E 4 HOH A 55 232 0 HOH HOH . E 4 HOH A 56 235 0 HOH HOH . E 4 HOH A 57 236 0 HOH HOH . E 4 HOH A 58 237 0 HOH HOH . E 4 HOH A 59 238 0 HOH HOH . E 4 HOH A 60 239 0 HOH HOH . E 4 HOH A 61 240 0 HOH HOH . E 4 HOH A 62 242 0 HOH HOH . E 4 HOH A 63 244 0 HOH HOH . E 4 HOH A 64 245 0 HOH HOH . E 4 HOH A 65 246 0 HOH HOH . E 4 HOH A 66 247 0 HOH HOH . E 4 HOH A 67 248 0 HOH HOH . E 4 HOH A 68 249 0 HOH HOH . E 4 HOH A 69 250 0 HOH HOH . E 4 HOH A 70 251 0 HOH HOH . E 4 HOH A 71 253 0 HOH HOH . E 4 HOH A 72 254 0 HOH HOH . E 4 HOH A 73 256 0 HOH HOH . E 4 HOH A 74 257 0 HOH HOH . E 4 HOH A 75 259 0 HOH HOH . E 4 HOH A 76 260 0 HOH HOH . E 4 HOH A 77 261 0 HOH HOH . E 4 HOH A 78 262 0 HOH HOH . E 4 HOH A 79 265 0 HOH HOH . E 4 HOH A 80 266 0 HOH HOH . E 4 HOH A 81 267 0 HOH HOH . E 4 HOH A 82 268 0 HOH HOH . E 4 HOH A 83 269 0 HOH HOH . E 4 HOH A 84 270 0 HOH HOH . E 4 HOH A 85 271 0 HOH HOH . E 4 HOH A 86 272 0 HOH HOH . E 4 HOH A 87 273 0 HOH HOH . E 4 HOH A 88 274 0 HOH HOH . E 4 HOH A 89 277 0 HOH HOH . E 4 HOH A 90 278 0 HOH HOH . E 4 HOH A 91 279 0 HOH HOH . E 4 HOH A 92 280 0 HOH HOH . E 4 HOH A 93 281 0 HOH HOH . E 4 HOH A 94 282 0 HOH HOH . E 4 HOH A 95 283 0 HOH HOH . E 4 HOH A 96 284 0 HOH HOH . E 4 HOH A 97 285 0 HOH HOH . E 4 HOH A 98 286 0 HOH HOH . E 4 HOH A 99 288 0 HOH HOH . E 4 HOH A 100 290 0 HOH HOH . E 4 HOH A 101 291 0 HOH HOH . E 4 HOH A 102 292 0 HOH HOH . E 4 HOH A 103 293 0 HOH HOH . E 4 HOH A 104 294 0 HOH HOH . E 4 HOH A 105 295 0 HOH HOH . E 4 HOH A 106 296 0 HOH HOH . E 4 HOH A 107 298 0 HOH HOH . E 4 HOH A 108 299 0 HOH HOH . E 4 HOH A 109 300 0 HOH HOH . E 4 HOH A 110 301 0 HOH HOH . E 4 HOH A 111 302 0 HOH HOH . E 4 HOH A 112 303 0 HOH HOH . E 4 HOH A 113 304 0 HOH HOH . E 4 HOH A 114 306 0 HOH HOH . E 4 HOH A 115 307 0 HOH HOH . E 4 HOH A 116 309 0 HOH HOH . E 4 HOH A 117 311 0 HOH HOH . E 4 HOH A 118 312 0 HOH HOH . E 4 HOH A 119 315 0 HOH HOH . E 4 HOH A 120 320 0 HOH HOH . E 4 HOH A 121 322 0 HOH HOH . E 4 HOH A 122 323 0 HOH HOH . E 4 HOH A 123 327 0 HOH HOH . E 4 HOH A 124 328 0 HOH HOH . E 4 HOH A 125 330 0 HOH HOH . E 4 HOH A 126 331 0 HOH HOH . E 4 HOH A 127 332 0 HOH HOH . E 4 HOH A 128 333 0 HOH HOH . E 4 HOH A 129 335 0 HOH HOH . E 4 HOH A 130 336 0 HOH HOH . E 4 HOH A 131 337 0 HOH HOH . E 4 HOH A 132 338 0 HOH HOH . E 4 HOH A 133 339 0 HOH HOH . E 4 HOH A 134 340 0 HOH HOH . E 4 HOH A 135 341 0 HOH HOH . E 4 HOH A 136 342 0 HOH HOH . E 4 HOH A 137 343 0 HOH HOH . E 4 HOH A 138 344 0 HOH HOH . E 4 HOH A 139 345 0 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . D 3 31.878 -1.169 15.456 1 34.96 ? C1 HED 170 A 1 HETATM 2 O O1 HED . . . D 3 33.254 -0.833 15.664 1 45.34 ? O1 HED 170 A 1 HETATM 3 C C2 HED . . . D 3 31.649 -1.185 13.974 1 27.86 ? C2 HED 170 A 1 HETATM 4 S S3 HED . . . D 3 33.237 -1.243 13.123 1 58.68 ? S3 HED 170 A 1 HETATM 5 S S4 HED . . . D 3 32.732 -1.021 11.136 1 100 ? S4 HED 170 A 1 HETATM 6 C C5 HED . . . D 3 32.637 -2.697 10.457 1 100 ? C5 HED 170 A 1 HETATM 7 C C6 HED . . . D 3 33.606 -2.896 9.276 1 60.71 ? C6 HED 170 A 1 HETATM 8 O O6 HED . . . D 3 34.842 -3.417 9.736 1 94.71 ? O6 HED 170 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #