data_1CVJ
#
_model_server_result.job_id            VKzXAZ9e5VxryJqxdw20jQ 
_model_server_result.datetime_utc      '2024-11-29 11:51:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":993}' 
#
_entry.id    1CVJ 
#
_exptl.entry_id    1CVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.67 
_cell.angle_gamma         90 
_cell.entry_id            1CVJ 
_cell.length_a            79.557 
_cell.length_b            176.797 
_cell.length_c            82.489 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CVJ 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
? dimeric 2 author_defined_assembly 5 
? dimeric 2 author_defined_assembly 6 
? dimeric 2 author_defined_assembly 7 
? dimeric 2 author_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,U,DA 1 1 
B,J,Q,Y,EA 2 1 
C,K,R,Z,FA 3 1 
D,L,V,AA,GA 4 1 
E,M,S,BA,HA 5 1 
F,N,W,IA 6 1 
G,O,T,JA 7 1 
H,P,X,CA,KA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 52 n n 
P O2P AMP sing 53 n n 
P O3P AMP sing 54 n n 
P O5' AMP sing 55 n n 
O2P HOP2 AMP sing 56 n n 
O3P HOP3 AMP sing 57 n n 
O5' C5' AMP sing 58 n n 
C5' C4' AMP sing 59 n n 
C5' "H5'1" AMP sing 60 n n 
C5' "H5'2" AMP sing 61 n n 
C4' O4' AMP sing 62 n n 
C4' C3' AMP sing 63 n n 
C4' H4' AMP sing 64 n n 
O4' C1' AMP sing 65 n n 
C3' O3' AMP sing 66 n n 
C3' C2' AMP sing 67 n n 
C3' H3' AMP sing 68 n n 
O3' HO3' AMP sing 69 n n 
C2' O2' AMP sing 70 n n 
C2' C1' AMP sing 71 n n 
C2' H2' AMP sing 72 n n 
O2' HO2' AMP sing 73 n n 
C1' N9 AMP sing 74 n n 
C1' H1' AMP sing 75 n n 
N9 C8 AMP sing 76 n y 
N9 C4 AMP sing 77 n y 
C8 N7 AMP doub 78 n y 
C8 H8 AMP sing 79 n n 
N7 C5 AMP sing 80 n y 
C5 C6 AMP sing 81 n y 
C5 C4 AMP doub 82 n y 
C6 N6 AMP sing 83 n n 
C6 N1 AMP doub 84 n y 
N6 HN61 AMP sing 85 n n 
N6 HN62 AMP sing 86 n n 
N1 C2 AMP sing 87 n y 
C2 N3 AMP doub 88 n y 
C2 H2 AMP sing 89 n n 
N3 C4 AMP sing 90 n y 
#
_atom_sites.entry_id                     1CVJ 
_atom_sites.fract_transf_matrix[1][1]    0.01257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006591 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013688 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 AMP N 1 992 992 AMP A . 
R 3 AMP O 1 993 993 AMP A . 
S 3 AMP Q 1 995 995 AMP A . 
T 3 AMP S 1 997 997 AMP A . 
U 3 AMP A 1 991 991 AMP A . 
V 3 AMP D 1 994 994 AMP A . 
W 3 AMP F 1 996 996 AMP A . 
X 3 AMP H 1 998 998 AMP A . 
Y 4 HOH N 1 104 104 HOH TIP . 
Y 4 HOH N 2 145 145 HOH TIP . 
Z 4 HOH O 1 130 130 HOH TIP . 
Z 4 HOH O 2 135 135 HOH TIP . 
AA 4 HOH P 1 149 149 HOH TIP . 
BA 4 HOH Q 1 137 137 HOH TIP . 
BA 4 HOH Q 2 139 139 HOH TIP . 
BA 4 HOH Q 3 144 144 HOH TIP . 
CA 4 HOH T 1 118 118 HOH TIP . 
CA 4 HOH T 2 152 152 HOH TIP . 
DA 4 HOH A 1 992 106 HOH TIP . 
DA 4 HOH A 2 993 112 HOH TIP . 
DA 4 HOH A 3 994 115 HOH TIP . 
DA 4 HOH A 4 995 120 HOH TIP . 
DA 4 HOH A 5 996 131 HOH TIP . 
DA 4 HOH A 6 997 134 HOH TIP . 
DA 4 HOH A 7 998 142 HOH TIP . 
EA 4 HOH B 1 191 102 HOH TIP . 
EA 4 HOH B 2 192 105 HOH TIP . 
EA 4 HOH B 3 193 114 HOH TIP . 
EA 4 HOH B 4 194 126 HOH TIP . 
EA 4 HOH B 5 195 140 HOH TIP . 
FA 4 HOH C 1 191 109 HOH TIP . 
FA 4 HOH C 2 192 116 HOH TIP . 
FA 4 HOH C 3 193 128 HOH TIP . 
FA 4 HOH C 4 194 132 HOH TIP . 
FA 4 HOH C 5 195 133 HOH TIP . 
FA 4 HOH C 6 196 138 HOH TIP . 
FA 4 HOH C 7 197 153 HOH TIP . 
GA 4 HOH D 1 995 119 HOH TIP . 
GA 4 HOH D 2 996 121 HOH TIP . 
GA 4 HOH D 3 997 127 HOH TIP . 
HA 4 HOH E 1 191 100 HOH TIP . 
HA 4 HOH E 2 192 103 HOH TIP . 
HA 4 HOH E 3 193 107 HOH TIP . 
HA 4 HOH E 4 194 110 HOH TIP . 
HA 4 HOH E 5 195 123 HOH TIP . 
HA 4 HOH E 6 196 125 HOH TIP . 
HA 4 HOH E 7 197 141 HOH TIP . 
HA 4 HOH E 8 198 143 HOH TIP . 
HA 4 HOH E 9 199 146 HOH TIP . 
HA 4 HOH E 10 200 150 HOH TIP . 
HA 4 HOH E 11 201 151 HOH TIP . 
IA 4 HOH F 1 997 117 HOH TIP . 
IA 4 HOH F 2 998 124 HOH TIP . 
IA 4 HOH F 3 999 147 HOH TIP . 
JA 4 HOH G 1 191 108 HOH TIP . 
JA 4 HOH G 2 192 122 HOH TIP . 
KA 4 HOH H 1 999 101 HOH TIP . 
KA 4 HOH H 2 1000 113 HOH TIP . 
KA 4 HOH H 3 1001 129 HOH TIP . 
KA 4 HOH H 4 1002 136 HOH TIP . 
KA 4 HOH H 5 1003 148 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' AMP . . . R 3 11.06 129.236 -2.259 0 100.16 ? O5' AMP 993 O 1 
HETATM 2 C C5' AMP . . . R 3 9.875 129.318 -1.464 0 100 ? C5' AMP 993 O 1 
HETATM 3 C C4' AMP . . . R 3 10.013 130.325 -0.347 0 100.94 ? C4' AMP 993 O 1 
HETATM 4 O O4' AMP . . . R 3 11.174 130 0.459 0 91.71 ? O4' AMP 993 O 1 
HETATM 5 C C3' AMP . . . R 3 10.287 131.752 -0.786 0 91.5 ? C3' AMP 993 O 1 
HETATM 6 O O3' AMP . . . R 3 9.129 132.418 -1.279 0 91.23 ? O3' AMP 993 O 1 
HETATM 7 C C2' AMP . . . R 3 10.877 132.359 0.479 0 92.32 ? C2' AMP 993 O 1 
HETATM 8 O O2' AMP . . . R 3 9.894 132.687 1.439 0 92 ? O2' AMP 993 O 1 
HETATM 9 C C1' AMP . . . R 3 11.726 131.194 0.994 0 91.57 ? C1' AMP 993 O 1 
HETATM 10 N N9 AMP . . . R 3 13.127 131.272 0.584 1 73.4 ? N9 AMP 993 O 1 
HETATM 11 C C8 AMP . . . R 3 13.649 131.123 -0.68 1 76.01 ? C8 AMP 993 O 1 
HETATM 12 N N7 AMP . . . R 3 14.956 131.251 -0.731 1 74.06 ? N7 AMP 993 O 1 
HETATM 13 C C5 AMP . . . R 3 15.321 131.499 0.586 1 74.65 ? C5 AMP 993 O 1 
HETATM 14 C C6 AMP . . . R 3 16.571 131.725 1.198 1 73.02 ? C6 AMP 993 O 1 
HETATM 15 N N6 AMP . . . R 3 17.733 131.735 0.534 1 72.87 ? N6 AMP 993 O 1 
HETATM 16 N N1 AMP . . . R 3 16.587 131.941 2.533 1 79.12 ? N1 AMP 993 O 1 
HETATM 17 C C2 AMP . . . R 3 15.42 131.926 3.202 1 71.13 ? C2 AMP 993 O 1 
HETATM 18 N N3 AMP . . . R 3 14.184 131.723 2.741 1 73.09 ? N3 AMP 993 O 1 
HETATM 19 C C4 AMP . . . R 3 14.204 131.515 1.409 1 74.75 ? C4 AMP 993 O 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#