data_1CVJ # _model_server_result.job_id cT5OqwwGWhei0nk-jVVZMg _model_server_result.datetime_utc '2024-11-04 22:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":997}' # _entry.id 1CVJ # _exptl.entry_id 1CVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.67 _cell.angle_gamma 90 _cell.entry_id 1CVJ _cell.length_a 79.557 _cell.length_b 176.797 _cell.length_c 82.489 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CVJ _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 ? dimeric 2 author_defined_assembly 5 ? dimeric 2 author_defined_assembly 6 ? dimeric 2 author_defined_assembly 7 ? dimeric 2 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,U,DA 1 1 B,J,Q,Y,EA 2 1 C,K,R,Z,FA 3 1 D,L,V,AA,GA 4 1 E,M,S,BA,HA 5 1 F,N,W,IA 6 1 G,O,T,JA 7 1 H,P,X,CA,KA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 52 n n P O2P AMP sing 53 n n P O3P AMP sing 54 n n P O5' AMP sing 55 n n O2P HOP2 AMP sing 56 n n O3P HOP3 AMP sing 57 n n O5' C5' AMP sing 58 n n C5' C4' AMP sing 59 n n C5' "H5'1" AMP sing 60 n n C5' "H5'2" AMP sing 61 n n C4' O4' AMP sing 62 n n C4' C3' AMP sing 63 n n C4' H4' AMP sing 64 n n O4' C1' AMP sing 65 n n C3' O3' AMP sing 66 n n C3' C2' AMP sing 67 n n C3' H3' AMP sing 68 n n O3' HO3' AMP sing 69 n n C2' O2' AMP sing 70 n n C2' C1' AMP sing 71 n n C2' H2' AMP sing 72 n n O2' HO2' AMP sing 73 n n C1' N9 AMP sing 74 n n C1' H1' AMP sing 75 n n N9 C8 AMP sing 76 n y N9 C4 AMP sing 77 n y C8 N7 AMP doub 78 n y C8 H8 AMP sing 79 n n N7 C5 AMP sing 80 n y C5 C6 AMP sing 81 n y C5 C4 AMP doub 82 n y C6 N6 AMP sing 83 n n C6 N1 AMP doub 84 n y N6 HN61 AMP sing 85 n n N6 HN62 AMP sing 86 n n N1 C2 AMP sing 87 n y C2 N3 AMP doub 88 n y C2 H2 AMP sing 89 n n N3 C4 AMP sing 90 n y # _atom_sites.entry_id 1CVJ _atom_sites.fract_transf_matrix[1][1] 0.01257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006591 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 AMP N 1 992 992 AMP A . R 3 AMP O 1 993 993 AMP A . S 3 AMP Q 1 995 995 AMP A . T 3 AMP S 1 997 997 AMP A . U 3 AMP A 1 991 991 AMP A . V 3 AMP D 1 994 994 AMP A . W 3 AMP F 1 996 996 AMP A . X 3 AMP H 1 998 998 AMP A . Y 4 HOH N 1 104 104 HOH TIP . Y 4 HOH N 2 145 145 HOH TIP . Z 4 HOH O 1 130 130 HOH TIP . Z 4 HOH O 2 135 135 HOH TIP . AA 4 HOH P 1 149 149 HOH TIP . BA 4 HOH Q 1 137 137 HOH TIP . BA 4 HOH Q 2 139 139 HOH TIP . BA 4 HOH Q 3 144 144 HOH TIP . CA 4 HOH T 1 118 118 HOH TIP . CA 4 HOH T 2 152 152 HOH TIP . DA 4 HOH A 1 992 106 HOH TIP . DA 4 HOH A 2 993 112 HOH TIP . DA 4 HOH A 3 994 115 HOH TIP . DA 4 HOH A 4 995 120 HOH TIP . DA 4 HOH A 5 996 131 HOH TIP . DA 4 HOH A 6 997 134 HOH TIP . DA 4 HOH A 7 998 142 HOH TIP . EA 4 HOH B 1 191 102 HOH TIP . EA 4 HOH B 2 192 105 HOH TIP . EA 4 HOH B 3 193 114 HOH TIP . EA 4 HOH B 4 194 126 HOH TIP . EA 4 HOH B 5 195 140 HOH TIP . FA 4 HOH C 1 191 109 HOH TIP . FA 4 HOH C 2 192 116 HOH TIP . FA 4 HOH C 3 193 128 HOH TIP . FA 4 HOH C 4 194 132 HOH TIP . FA 4 HOH C 5 195 133 HOH TIP . FA 4 HOH C 6 196 138 HOH TIP . FA 4 HOH C 7 197 153 HOH TIP . GA 4 HOH D 1 995 119 HOH TIP . GA 4 HOH D 2 996 121 HOH TIP . GA 4 HOH D 3 997 127 HOH TIP . HA 4 HOH E 1 191 100 HOH TIP . HA 4 HOH E 2 192 103 HOH TIP . HA 4 HOH E 3 193 107 HOH TIP . HA 4 HOH E 4 194 110 HOH TIP . HA 4 HOH E 5 195 123 HOH TIP . HA 4 HOH E 6 196 125 HOH TIP . HA 4 HOH E 7 197 141 HOH TIP . HA 4 HOH E 8 198 143 HOH TIP . HA 4 HOH E 9 199 146 HOH TIP . HA 4 HOH E 10 200 150 HOH TIP . HA 4 HOH E 11 201 151 HOH TIP . IA 4 HOH F 1 997 117 HOH TIP . IA 4 HOH F 2 998 124 HOH TIP . IA 4 HOH F 3 999 147 HOH TIP . JA 4 HOH G 1 191 108 HOH TIP . JA 4 HOH G 2 192 122 HOH TIP . KA 4 HOH H 1 999 101 HOH TIP . KA 4 HOH H 2 1000 113 HOH TIP . KA 4 HOH H 3 1001 129 HOH TIP . KA 4 HOH H 4 1002 136 HOH TIP . KA 4 HOH H 5 1003 148 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' AMP . . . T 3 34.634 118.587 -17.938 0 100.16 ? O5' AMP 997 S 1 HETATM 2 C C5' AMP . . . T 3 35.989 118.378 -18.342 0 100 ? C5' AMP 997 S 1 HETATM 3 C C4' AMP . . . T 3 36.497 117.014 -17.939 0 100.94 ? C4' AMP 997 S 1 HETATM 4 O O4' AMP . . . T 3 36.334 116.838 -16.508 0 91.71 ? O4' AMP 997 S 1 HETATM 5 C C3' AMP . . . T 3 35.738 115.835 -18.521 0 91.5 ? C3' AMP 997 S 1 HETATM 6 O O3' AMP . . . T 3 36.045 115.581 -19.896 0 91.23 ? O3' AMP 997 S 1 HETATM 7 C C2' AMP . . . T 3 36.119 114.717 -17.56 0 92.32 ? C2' AMP 997 S 1 HETATM 8 O O2' AMP . . . T 3 37.411 114.2 -17.809 0 92 ? O2' AMP 997 S 1 HETATM 9 C C1' AMP . . . T 3 36.119 115.464 -16.223 0 91.57 ? C1' AMP 997 S 1 HETATM 10 N N9 AMP . . . T 3 34.858 115.34 -15.491 1 73.4 ? N9 AMP 997 S 1 HETATM 11 C C8 AMP . . . T 3 33.63 115.871 -15.822 1 76.01 ? C8 AMP 997 S 1 HETATM 12 N N7 AMP . . . T 3 32.678 115.583 -14.962 1 74.06 ? N7 AMP 997 S 1 HETATM 13 C C5 AMP . . . T 3 33.32 114.812 -14 1 74.65 ? C5 AMP 997 S 1 HETATM 14 C C6 AMP . . . T 3 32.86 114.194 -12.818 1 73.02 ? C6 AMP 997 S 1 HETATM 15 N N6 AMP . . . T 3 31.592 114.257 -12.395 1 72.87 ? N6 AMP 997 S 1 HETATM 16 N N1 AMP . . . T 3 33.76 113.501 -12.08 1 79.12 ? N1 AMP 997 S 1 HETATM 17 C C2 AMP . . . T 3 35.033 113.437 -12.509 1 71.13 ? C2 AMP 997 S 1 HETATM 18 N N3 AMP . . . T 3 35.586 113.972 -13.601 1 73.09 ? N3 AMP 997 S 1 HETATM 19 C C4 AMP . . . T 3 34.666 114.655 -14.312 1 74.75 ? C4 AMP 997 S 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #