data_1CVM # _model_server_result.job_id Eqm8iA92RwAGuAzrAoQoeA _model_server_result.datetime_utc '2025-09-04 21:21:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":814}' # _entry.id 1CVM # _exptl.entry_id 1CVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CVM _cell.length_a 51.09 _cell.length_b 65.01 _cell.length_c 105.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 1 A LYS 29 3_555 I CD CD . A CD 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc2 A OE1 GLU 15 A GLU 43 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc3 A OE2 GLU 15 A GLU 43 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc4 A OD1 ASP 27 A ASP 55 1_555 G CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 A OD2 ASP 27 A ASP 55 1_555 G CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc6 A OD1 ASP 28 A ASP 56 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc7 A OD2 ASP 28 A ASP 56 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc8 A O PRO 29 A PRO 57 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc9 A O VAL 73 A VAL 101 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc10 A OE1 GLU 183 A GLU 211 1_555 G CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc11 A OE2 GLU 183 A GLU 211 1_555 G CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc12 A OE2 GLU 199 A GLU 227 1_555 E CD CD . A CD 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc13 A OD2 ASP 200 A ASP 228 1_555 I CD CD . A CD 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc14 A OD1 ASP 200 A ASP 228 1_555 I CD CD . A CD 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc15 A OD1 ASP 230 A ASP 258 1_555 F CD CD . A CD 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc16 A OD2 ASP 230 A ASP 258 1_555 I CD CD . A CD 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc17 A OD1 ASP 230 A ASP 258 1_555 I CD CD . A CD 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc18 A OE1 GLU 232 A GLU 260 1_555 E CD CD . A CD 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc19 A OE2 GLU 232 A GLU 260 1_555 E CD CD . A CD 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc20 A OE1 GLU 232 A GLU 260 1_555 F CD CD . A CD 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc21 A OE1 GLN 251 A GLN 279 1_555 F CD CD . A CD 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc22 A OD2 ASP 280 A ASP 308 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc23 A OD1 ASP 280 A ASP 308 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc24 A O GLY 281 A GLY 309 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc25 A OD1 ASP 286 A ASP 314 1_555 H CD CD . A CD 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc26 A OD2 ASP 286 A ASP 314 1_555 H CD CD . A CD 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc27 A ND2 ASN 308 A ASN 336 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.247 ? metalc ? metalc28 A OD1 ASN 308 A ASN 336 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc29 A O GLU 310 A GLU 338 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc30 A OD1 ASN 311 A ASN 339 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc31 A O ILE 312 A ILE 340 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc32 A OD1 ASP 313 A ASP 341 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc33 J O HOH . A HOH 507 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc34 J O HOH . A HOH 515 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc35 J O HOH . A HOH 526 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc36 J O HOH . A HOH 529 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc37 J O HOH . A HOH 533 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc38 J O HOH . A HOH 554 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CVM _atom_sites.fract_transf_matrix[1][1] 0.019573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 801 801 CA CA . C 2 CA A 1 802 802 CA CA . D 2 CA A 1 803 803 CA CA . E 3 CD A 1 811 811 CD CD . F 3 CD A 1 812 812 CD CD . G 3 CD A 1 813 813 CD CD . H 3 CD A 1 814 814 CD CD . I 3 CD A 1 815 815 CD CD . J 4 HOH A 1 501 501 HOH SOL . J 4 HOH A 2 502 502 HOH SOL . J 4 HOH A 3 503 503 HOH SOL . J 4 HOH A 4 504 504 HOH SOL . J 4 HOH A 5 505 505 HOH SOL . J 4 HOH A 6 506 506 HOH SOL . J 4 HOH A 7 507 507 HOH SOL . J 4 HOH A 8 508 508 HOH SOL . J 4 HOH A 9 511 511 HOH SOL . J 4 HOH A 10 512 512 HOH SOL . J 4 HOH A 11 513 513 HOH SOL . J 4 HOH A 12 514 514 HOH SOL . J 4 HOH A 13 515 515 HOH SOL . J 4 HOH A 14 516 516 HOH SOL . J 4 HOH A 15 517 517 HOH SOL . J 4 HOH A 16 518 518 HOH SOL . J 4 HOH A 17 519 519 HOH SOL . J 4 HOH A 18 520 520 HOH SOL . J 4 HOH A 19 521 521 HOH SOL . J 4 HOH A 20 522 522 HOH SOL . J 4 HOH A 21 524 524 HOH SOL . J 4 HOH A 22 525 525 HOH SOL . J 4 HOH A 23 526 526 HOH SOL . J 4 HOH A 24 527 527 HOH SOL . J 4 HOH A 25 528 528 HOH SOL . J 4 HOH A 26 529 529 HOH SOL . J 4 HOH A 27 530 530 HOH SOL . J 4 HOH A 28 531 531 HOH SOL . J 4 HOH A 29 532 532 HOH SOL . J 4 HOH A 30 533 533 HOH SOL . J 4 HOH A 31 534 534 HOH SOL . J 4 HOH A 32 535 535 HOH SOL . J 4 HOH A 33 536 536 HOH SOL . J 4 HOH A 34 538 538 HOH SOL . J 4 HOH A 35 539 539 HOH SOL . J 4 HOH A 36 540 540 HOH SOL . J 4 HOH A 37 541 541 HOH SOL . J 4 HOH A 38 542 542 HOH SOL . J 4 HOH A 39 543 543 HOH SOL . J 4 HOH A 40 544 544 HOH SOL . J 4 HOH A 41 545 545 HOH SOL . J 4 HOH A 42 546 546 HOH SOL . J 4 HOH A 43 547 547 HOH SOL . J 4 HOH A 44 548 548 HOH SOL . J 4 HOH A 45 549 549 HOH SOL . J 4 HOH A 46 550 550 HOH SOL . J 4 HOH A 47 554 554 HOH SOL . J 4 HOH A 48 555 555 HOH SOL . J 4 HOH A 49 556 556 HOH SOL . J 4 HOH A 50 557 557 HOH SOL . J 4 HOH A 51 558 558 HOH SOL . J 4 HOH A 52 559 559 HOH SOL . J 4 HOH A 53 560 560 HOH SOL . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.903 _atom_site.Cartn_y 14.967 _atom_site.Cartn_z 16.467 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 814 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #