data_1CX3 # _model_server_result.job_id nIaBfXoG9ZQ8B42Lt1K45g _model_server_result.datetime_utc '2024-12-02 23:47:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cx3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":7}' # _entry.id 1CX3 # _exptl.entry_id 1CX3 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 522.594 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(3,7-DIAZANONYLENE)-BIS-NAPHTHALIMIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CX3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 1 A DA 1 1_555 B N3 DT 6 B DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 A DA 1 1_555 B O4 DT 6 B DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DT 2 A DT 2 1_555 B N1 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 DT 2 A DT 2 1_555 B N6 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DG 3 A DG 3 1_555 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 DG 3 A DG 3 1_555 B O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 DG 3 A DG 3 1_555 B N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 A DC 4 1_555 B N1 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 A DC 4 1_555 B O6 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 A DC 4 1_555 B N2 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 5 A DA 5 1_555 B N3 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 5 A DA 5 1_555 B O4 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 6 A DT 6 1_555 B N1 DA 1 B DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 6 A DT 6 1_555 B N6 DA 1 B DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C31 H30 N4 O4 2' _chem_comp.formula_weight 522.594 _chem_comp.id NF _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(3,7-DIAZANONYLENE)-BIS-NAPHTHALIMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LU-79553 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C11 NF doub 150 n n C11 N21 NF sing 151 n n C11 CXT NF sing 152 n n N21 C12 NF sing 153 n n N21 C31 NF sing 154 n n C12 C22 NF sing 155 n n C12 H112 NF sing 156 n n C12 H122 NF sing 157 n n C31 O31 NF doub 158 n n C31 CX3 NF sing 159 n n CX3 CXD NF doub 160 n y CX3 C41 NF sing 161 n y CXD CXT NF sing 162 n y CXD CXN NF sing 163 n y CXT C91 NF doub 164 n y C91 C81 NF sing 165 n y C91 H91 NF sing 166 n n C81 C71 NF doub 167 n y C81 H81 NF sing 168 n n C71 CXN NF sing 169 n y C71 H71 NF sing 170 n n CXN C61 NF doub 171 n y C61 C51 NF sing 172 n y C61 H61 NF sing 173 n n C51 C41 NF doub 174 n y C51 H51 NF sing 175 n n C41 H41 NF sing 176 n n C22 N32 NF sing 177 n n C22 H212 NF sing 178 n n C22 H222 NF sing 179 n n N32 C42 NF sing 180 n n N32 H312 NF sing 181 n n N32 H322 NF sing 182 n n C42 C52 NF sing 183 n n C42 H412 NF sing 184 n n C42 H422 NF sing 185 n n C52 C62 NF sing 186 n n C52 H512 NF sing 187 n n C52 H522 NF sing 188 n n C62 N72 NF sing 189 n n C62 H612 NF sing 190 n n C62 H622 NF sing 191 n n N72 C82 NF sing 192 n n N72 H712 NF sing 193 n n N72 H722 NF sing 194 n n C82 C92 NF sing 195 n n C82 H812 NF sing 196 n n C82 H822 NF sing 197 n n O13 C13 NF doub 198 n n C13 N23 NF sing 199 n n C13 CXV NF sing 200 n n N23 C92 NF sing 201 n n N23 C33 NF sing 202 n n C92 H912 NF sing 203 n n C92 H922 NF sing 204 n n C33 O33 NF doub 205 n n C33 CX5 NF sing 206 n n CX5 CXF NF doub 207 n y CX5 C43 NF sing 208 n y CXF CXV NF sing 209 n y CXF CXP NF sing 210 n y CXV C93 NF doub 211 n y C93 C83 NF sing 212 n y C93 H93 NF sing 213 n n C83 C73 NF doub 214 n y C83 H83 NF sing 215 n n C73 CXP NF sing 216 n y C73 H73 NF sing 217 n n CXP C63 NF doub 218 n y C63 C53 NF sing 219 n y C63 H63 NF sing 220 n n C53 C43 NF doub 221 n y C53 H53 NF sing 222 n n C43 H43 NF sing 223 n n # _atom_sites.entry_id 1CX3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 7 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NF _pdbx_nonpoly_scheme.auth_mon_id NF _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 NF . . . C 2 0.208 2.24 -4.741 1 10 ? O11 NF 7 A 1 HETATM 2 C C11 NF . . . C 2 -0.861 2.249 -4.193 1 10 ? C11 NF 7 A 1 HETATM 3 N N21 NF . . . C 2 -1.326 3.396 -3.539 1 10 ? N21 NF 7 A 1 HETATM 4 C C12 NF . . . C 2 -0.445 4.596 -3.518 1 10 ? C12 NF 7 A 1 HETATM 5 C C31 NF . . . C 2 -2.568 3.475 -2.9 1 10 ? C31 NF 7 A 1 HETATM 6 O O31 NF . . . C 2 -2.912 4.49 -2.358 1 10 ? O31 NF 7 A 1 HETATM 7 C CX3 NF . . . C 2 -3.436 2.254 -2.892 1 10 ? CX3 NF 7 A 1 HETATM 8 C CXD NF . . . C 2 -2.991 1.065 -3.522 1 10 ? CXD NF 7 A 1 HETATM 9 C CXT NF . . . C 2 -1.734 1.033 -4.179 1 10 ? CXT NF 7 A 1 HETATM 10 C C91 NF . . . C 2 -1.311 -0.116 -4.81 1 10 ? C91 NF 7 A 1 HETATM 11 C C81 NF . . . C 2 -2.101 -1.274 -4.788 1 10 ? C81 NF 7 A 1 HETATM 12 C C71 NF . . . C 2 -3.334 -1.284 -4.123 1 10 ? C71 NF 7 A 1 HETATM 13 C CXN NF . . . C 2 -3.807 -0.1 -3.492 1 10 ? CXN NF 7 A 1 HETATM 14 C C61 NF . . . C 2 -5.069 -0.04 -2.834 1 10 ? C61 NF 7 A 1 HETATM 15 C C51 NF . . . C 2 -5.487 1.153 -2.229 1 10 ? C51 NF 7 A 1 HETATM 16 C C41 NF . . . C 2 -4.662 2.287 -2.264 1 10 ? C41 NF 7 A 1 HETATM 17 C C22 NF . . . C 2 0.394 4.744 -2.242 1 10 ? C22 NF 7 A 1 HETATM 18 N N32 NF . . . C 2 -0.443 5.154 -1.096 1 10 ? N32 NF 7 A 1 HETATM 19 C C42 NF . . . C 2 0.269 5.648 0.102 1 10 ? C42 NF 7 A 1 HETATM 20 C C52 NF . . . C 2 0.819 4.523 0.99 1 10 ? C52 NF 7 A 1 HETATM 21 C C62 NF . . . C 2 2.311 4.221 0.814 1 10 ? C62 NF 7 A 1 HETATM 22 N N72 NF . . . C 2 2.755 3.256 1.841 1 10 ? N72 NF 7 A 1 HETATM 23 C C82 NF . . . C 2 4.202 2.985 1.886 1 10 ? C82 NF 7 A 1 HETATM 24 O O13 NF . . . C 2 2.248 1.805 4.515 1 10 ? O13 NF 7 A 1 HETATM 25 C C13 NF . . . C 2 2.761 0.823 4.05 1 10 ? C13 NF 7 A 1 HETATM 26 N N23 NF . . . C 2 3.96 0.915 3.335 1 10 ? N23 NF 7 A 1 HETATM 27 C C92 NF . . . C 2 4.588 2.257 3.179 1 10 ? C92 NF 7 A 1 HETATM 28 C C33 NF . . . C 2 4.606 -0.182 2.755 1 10 ? C33 NF 7 A 1 HETATM 29 O O33 NF . . . C 2 5.632 -0.038 2.149 1 10 ? O33 NF 7 A 1 HETATM 30 C CX5 NF . . . C 2 3.969 -1.531 2.903 1 10 ? CX5 NF 7 A 1 HETATM 31 C CXF NF . . . C 2 2.743 -1.665 3.605 1 10 ? CXF NF 7 A 1 HETATM 32 C CXV NF . . . C 2 2.127 -0.528 4.191 1 10 ? CXV NF 7 A 1 HETATM 33 C C93 NF . . . C 2 0.947 -0.663 4.889 1 10 ? C93 NF 7 A 1 HETATM 34 C C83 NF . . . C 2 0.317 -1.914 4.999 1 10 ? C83 NF 7 A 1 HETATM 35 C C73 NF . . . C 2 0.89 -3.05 4.412 1 10 ? C73 NF 7 A 1 HETATM 36 C CXP NF . . . C 2 2.128 -2.944 3.717 1 10 ? CXP NF 7 A 1 HETATM 37 C C63 NF . . . C 2 2.773 -4.071 3.131 1 10 ? C63 NF 7 A 1 HETATM 38 C C53 NF . . . C 2 3.991 -3.909 2.455 1 10 ? C53 NF 7 A 1 HETATM 39 C C43 NF . . . C 2 4.574 -2.637 2.347 1 10 ? C43 NF 7 A 1 HETATM 40 H H112 NF . . . C 2 0.24 4.588 -4.367 1 10 ? H112 NF 7 A 1 HETATM 41 H H122 NF . . . C 2 -1.039 5.5 -3.635 1 10 ? H122 NF 7 A 1 HETATM 42 H H91 NF . . . C 2 -0.366 -0.144 -5.334 1 10 ? H91 NF 7 A 1 HETATM 43 H H81 NF . . . C 2 -1.771 -2.155 -5.306 1 10 ? H81 NF 7 A 1 HETATM 44 H H71 NF . . . C 2 -3.934 -2.182 -4.118 1 10 ? H71 NF 7 A 1 HETATM 45 H H61 NF . . . C 2 -5.707 -0.911 -2.799 1 10 ? H61 NF 7 A 1 HETATM 46 H H51 NF . . . C 2 -6.443 1.198 -1.726 1 10 ? H51 NF 7 A 1 HETATM 47 H H41 NF . . . C 2 -5.005 3.182 -1.778 1 10 ? H41 NF 7 A 1 HETATM 48 H H212 NF . . . C 2 1.133 5.525 -2.426 1 10 ? H212 NF 7 A 1 HETATM 49 H H222 NF . . . C 2 0.916 3.812 -2.031 1 10 ? H222 NF 7 A 1 HETATM 50 H H312 NF . . . C 2 -1.034 5.907 -1.421 1 10 ? H312 NF 7 A 1 HETATM 51 H H322 NF . . . C 2 -1.056 4.393 -0.828 1 10 ? H322 NF 7 A 1 HETATM 52 H H412 NF . . . C 2 -0.479 6.18 0.693 1 10 ? H412 NF 7 A 1 HETATM 53 H H422 NF . . . C 2 1.051 6.36 -0.165 1 10 ? H422 NF 7 A 1 HETATM 54 H H512 NF . . . C 2 0.668 4.824 2.028 1 10 ? H512 NF 7 A 1 HETATM 55 H H522 NF . . . C 2 0.253 3.614 0.811 1 10 ? H522 NF 7 A 1 HETATM 56 H H612 NF . . . C 2 2.498 3.811 -0.179 1 10 ? H612 NF 7 A 1 HETATM 57 H H622 NF . . . C 2 2.873 5.149 0.931 1 10 ? H622 NF 7 A 1 HETATM 58 H H712 NF . . . C 2 2.478 3.604 2.749 1 10 ? H712 NF 7 A 1 HETATM 59 H H722 NF . . . C 2 2.287 2.372 1.683 1 10 ? H722 NF 7 A 1 HETATM 60 H H812 NF . . . C 2 4.491 2.387 1.021 1 10 ? H812 NF 7 A 1 HETATM 61 H H822 NF . . . C 2 4.747 3.929 1.859 1 10 ? H822 NF 7 A 1 HETATM 62 H H912 NF . . . C 2 4.339 2.901 4.024 1 10 ? H912 NF 7 A 1 HETATM 63 H H922 NF . . . C 2 5.671 2.173 3.19 1 10 ? H922 NF 7 A 1 HETATM 64 H H93 NF . . . C 2 0.483 0.193 5.358 1 10 ? H93 NF 7 A 1 HETATM 65 H H83 NF . . . C 2 -0.605 -2.008 5.548 1 10 ? H83 NF 7 A 1 HETATM 66 H H73 NF . . . C 2 0.4 -4.009 4.512 1 10 ? H73 NF 7 A 1 HETATM 67 H H63 NF . . . C 2 2.328 -5.052 3.206 1 10 ? H63 NF 7 A 1 HETATM 68 H H53 NF . . . C 2 4.478 -4.763 2.008 1 10 ? H53 NF 7 A 1 HETATM 69 H H43 NF . . . C 2 5.501 -2.543 1.808 1 10 ? H43 NF 7 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 3714 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 69 #