data_1CY0 # _model_server_result.job_id zwpXxYyXDI6WtFOYRPNQCw _model_server_result.datetime_utc '2024-12-22 01:13:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":605}' # _entry.id 1CY0 # _exptl.entry_id 1CY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CY0 _cell.length_a 63.04 _cell.length_b 73.31 _cell.length_c 134.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 1CY0 _atom_sites.fract_transf_matrix[1][1] 0.015863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3P A 1 605 605 A3P A3P . C 3 HOH A 1 606 1 HOH HOH . C 3 HOH A 2 607 2 HOH HOH . C 3 HOH A 3 608 3 HOH HOH . C 3 HOH A 4 609 4 HOH HOH . C 3 HOH A 5 610 5 HOH HOH . C 3 HOH A 6 611 6 HOH HOH . C 3 HOH A 7 612 7 HOH HOH . C 3 HOH A 8 613 8 HOH HOH . C 3 HOH A 9 614 9 HOH HOH . C 3 HOH A 10 615 10 HOH HOH . C 3 HOH A 11 616 11 HOH HOH . C 3 HOH A 12 617 12 HOH HOH . C 3 HOH A 13 618 13 HOH HOH . C 3 HOH A 14 619 14 HOH HOH . C 3 HOH A 15 620 15 HOH HOH . C 3 HOH A 16 621 16 HOH HOH . C 3 HOH A 17 622 17 HOH HOH . C 3 HOH A 18 623 18 HOH HOH . C 3 HOH A 19 624 19 HOH HOH . C 3 HOH A 20 625 20 HOH HOH . C 3 HOH A 21 626 21 HOH HOH . C 3 HOH A 22 627 22 HOH HOH . C 3 HOH A 23 628 23 HOH HOH . C 3 HOH A 24 629 24 HOH HOH . C 3 HOH A 25 630 25 HOH HOH . C 3 HOH A 26 631 26 HOH HOH . C 3 HOH A 27 632 27 HOH HOH . C 3 HOH A 28 633 28 HOH HOH . C 3 HOH A 29 634 29 HOH HOH . C 3 HOH A 30 635 30 HOH HOH . C 3 HOH A 31 636 31 HOH HOH . C 3 HOH A 32 637 32 HOH HOH . C 3 HOH A 33 638 33 HOH HOH . C 3 HOH A 34 639 34 HOH HOH . C 3 HOH A 35 640 35 HOH HOH . C 3 HOH A 36 641 36 HOH HOH . C 3 HOH A 37 642 37 HOH HOH . C 3 HOH A 38 643 38 HOH HOH . C 3 HOH A 39 644 39 HOH HOH . C 3 HOH A 40 645 40 HOH HOH . C 3 HOH A 41 646 41 HOH HOH . C 3 HOH A 42 647 42 HOH HOH . C 3 HOH A 43 648 43 HOH HOH . C 3 HOH A 44 649 44 HOH HOH . C 3 HOH A 45 650 45 HOH HOH . C 3 HOH A 46 651 46 HOH HOH . C 3 HOH A 47 652 47 HOH HOH . C 3 HOH A 48 653 48 HOH HOH . C 3 HOH A 49 654 49 HOH HOH . C 3 HOH A 50 655 50 HOH HOH . C 3 HOH A 51 656 51 HOH HOH . C 3 HOH A 52 657 52 HOH HOH . C 3 HOH A 53 658 53 HOH HOH . C 3 HOH A 54 659 54 HOH HOH . C 3 HOH A 55 660 55 HOH HOH . C 3 HOH A 56 661 56 HOH HOH . C 3 HOH A 57 662 57 HOH HOH . C 3 HOH A 58 663 58 HOH HOH . C 3 HOH A 59 664 59 HOH HOH . C 3 HOH A 60 665 60 HOH HOH . C 3 HOH A 61 666 61 HOH HOH . C 3 HOH A 62 667 62 HOH HOH . C 3 HOH A 63 668 63 HOH HOH . C 3 HOH A 64 669 64 HOH HOH . C 3 HOH A 65 670 65 HOH HOH . C 3 HOH A 66 671 66 HOH HOH . C 3 HOH A 67 672 67 HOH HOH . C 3 HOH A 68 673 68 HOH HOH . C 3 HOH A 69 674 69 HOH HOH . C 3 HOH A 70 675 70 HOH HOH . C 3 HOH A 71 676 71 HOH HOH . C 3 HOH A 72 677 72 HOH HOH . C 3 HOH A 73 678 73 HOH HOH . C 3 HOH A 74 679 74 HOH HOH . C 3 HOH A 75 680 75 HOH HOH . C 3 HOH A 76 681 76 HOH HOH . C 3 HOH A 77 682 77 HOH HOH . C 3 HOH A 78 683 78 HOH HOH . C 3 HOH A 79 684 79 HOH HOH . C 3 HOH A 80 685 80 HOH HOH . C 3 HOH A 81 686 81 HOH HOH . C 3 HOH A 82 687 82 HOH HOH . C 3 HOH A 83 688 83 HOH HOH . C 3 HOH A 84 689 84 HOH HOH . C 3 HOH A 85 690 85 HOH HOH . C 3 HOH A 86 691 86 HOH HOH . C 3 HOH A 87 692 87 HOH HOH . C 3 HOH A 88 693 88 HOH HOH . C 3 HOH A 89 694 89 HOH HOH . C 3 HOH A 90 695 90 HOH HOH . C 3 HOH A 91 696 91 HOH HOH . C 3 HOH A 92 697 92 HOH HOH . C 3 HOH A 93 698 93 HOH HOH . C 3 HOH A 94 699 94 HOH HOH . C 3 HOH A 95 700 95 HOH HOH . C 3 HOH A 96 701 96 HOH HOH . C 3 HOH A 97 702 97 HOH HOH . C 3 HOH A 98 703 98 HOH HOH . C 3 HOH A 99 704 99 HOH HOH . C 3 HOH A 100 705 100 HOH HOH . C 3 HOH A 101 706 101 HOH HOH . C 3 HOH A 102 707 102 HOH HOH . C 3 HOH A 103 708 103 HOH HOH . C 3 HOH A 104 709 104 HOH HOH . C 3 HOH A 105 710 105 HOH HOH . C 3 HOH A 106 711 106 HOH HOH . C 3 HOH A 107 712 107 HOH HOH . C 3 HOH A 108 713 108 HOH HOH . C 3 HOH A 109 714 109 HOH HOH . C 3 HOH A 110 715 110 HOH HOH . C 3 HOH A 111 716 111 HOH HOH . C 3 HOH A 112 717 112 HOH HOH . C 3 HOH A 113 718 113 HOH HOH . C 3 HOH A 114 719 114 HOH HOH . C 3 HOH A 115 720 115 HOH HOH . C 3 HOH A 116 721 116 HOH HOH . C 3 HOH A 117 722 117 HOH HOH . C 3 HOH A 118 723 118 HOH HOH . C 3 HOH A 119 724 119 HOH HOH . C 3 HOH A 120 725 120 HOH HOH . C 3 HOH A 121 726 121 HOH HOH . C 3 HOH A 122 727 122 HOH HOH . C 3 HOH A 123 728 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . B 2 4.4 34.205 21.988 0.8 42.18 ? P1 A3P 605 A 1 HETATM 2 O O1P A3P . . . B 2 5.289 35.169 21.304 0.8 42.63 ? O1P A3P 605 A 1 HETATM 3 O O2P A3P . . . B 2 3.15 34.852 22.394 0.8 42.48 ? O2P A3P 605 A 1 HETATM 4 O O3P A3P . . . B 2 4.139 33.053 21.105 0.8 41.82 ? O3P A3P 605 A 1 HETATM 5 P P2 A3P . . . B 2 6.992 37.852 26.872 0.8 53.47 ? P2 A3P 605 A 1 HETATM 6 O O4P A3P . . . B 2 6.883 39.214 26.31 0.8 53.21 ? O4P A3P 605 A 1 HETATM 7 O O5P A3P . . . B 2 6.225 37.727 28.126 0.8 52.41 ? O5P A3P 605 A 1 HETATM 8 O O6P A3P . . . B 2 8.434 37.49 27.113 0.8 53 ? O6P A3P 605 A 1 HETATM 9 O O5' A3P . . . B 2 6.376 36.846 25.799 0.8 50.52 ? O5' A3P 605 A 1 HETATM 10 C C5' A3P . . . B 2 6.875 36.692 24.454 0.8 47.23 ? C5' A3P 605 A 1 HETATM 11 C C4' A3P . . . B 2 6.846 35.192 24.046 0.8 44.38 ? C4' A3P 605 A 1 HETATM 12 O O4' A3P . . . B 2 7.928 34.469 24.713 0.8 42.71 ? O4' A3P 605 A 1 HETATM 13 C C3' A3P . . . B 2 5.555 34.456 24.422 0.8 42.93 ? C3' A3P 605 A 1 HETATM 14 O O3' A3P . . . B 2 5.132 33.644 23.291 0.8 42.69 ? O3' A3P 605 A 1 HETATM 15 C C2' A3P . . . B 2 5.936 33.684 25.688 0.8 41.91 ? C2' A3P 605 A 1 HETATM 16 O O2' A3P . . . B 2 5.135 32.551 25.987 0.8 40.54 ? O2' A3P 605 A 1 HETATM 17 C C1' A3P . . . B 2 7.419 33.364 25.457 0.8 41.33 ? C1' A3P 605 A 1 HETATM 18 N N9 A3P . . . B 2 8.226 33.227 26.699 0.8 39.85 ? N9 A3P 605 A 1 HETATM 19 C C8 A3P . . . B 2 8.313 34.077 27.796 0.8 39.1 ? C8 A3P 605 A 1 HETATM 20 N N7 A3P . . . B 2 9.131 33.681 28.747 0.8 38.4 ? N7 A3P 605 A 1 HETATM 21 C C5 A3P . . . B 2 9.637 32.481 28.27 0.8 38.49 ? C5 A3P 605 A 1 HETATM 22 C C6 A3P . . . B 2 10.586 31.515 28.798 0.8 38.45 ? C6 A3P 605 A 1 HETATM 23 N N6 A3P . . . B 2 11.203 31.65 29.985 0.8 38.01 ? N6 A3P 605 A 1 HETATM 24 N N1 A3P . . . B 2 10.872 30.383 28.03 0.8 38.89 ? N1 A3P 605 A 1 HETATM 25 C C2 A3P . . . B 2 10.266 30.204 26.81 0.8 38.46 ? C2 A3P 605 A 1 HETATM 26 N N3 A3P . . . B 2 9.359 31.044 26.204 0.8 38.46 ? N3 A3P 605 A 1 HETATM 27 C C4 A3P . . . B 2 9.084 32.169 26.988 0.8 38.99 ? C4 A3P 605 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 490 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #