data_1CY4 # _model_server_result.job_id h8QrJ71KrBCO3fzssMg0Gw _model_server_result.datetime_utc '2024-12-26 21:03:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 1CY4 # _exptl.entry_id 1CY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CY4 _cell.length_a 63.95 _cell.length_b 78.76 _cell.length_c 141.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1CY4 _atom_sites.fract_transf_matrix[1][1] 0.015637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1001 1 PO4 PO4 . C 2 PO4 A 1 1002 2 PO4 PO4 . D 2 PO4 A 1 1003 3 PO4 PO4 . E 3 TMP A 1 600 600 TMP TMP . F 4 HOH A 1 1004 1 HOH HOH . F 4 HOH A 2 1005 2 HOH HOH . F 4 HOH A 3 1006 3 HOH HOH . F 4 HOH A 4 1007 4 HOH HOH . F 4 HOH A 5 1008 5 HOH HOH . F 4 HOH A 6 1009 6 HOH HOH . F 4 HOH A 7 1010 7 HOH HOH . F 4 HOH A 8 1011 8 HOH HOH . F 4 HOH A 9 1012 9 HOH HOH . F 4 HOH A 10 1013 10 HOH HOH . F 4 HOH A 11 1014 11 HOH HOH . F 4 HOH A 12 1015 12 HOH HOH . F 4 HOH A 13 1016 13 HOH HOH . F 4 HOH A 14 1017 14 HOH HOH . F 4 HOH A 15 1018 15 HOH HOH . F 4 HOH A 16 1019 16 HOH HOH . F 4 HOH A 17 1020 17 HOH HOH . F 4 HOH A 18 1021 18 HOH HOH . F 4 HOH A 19 1022 19 HOH HOH . F 4 HOH A 20 1023 20 HOH HOH . F 4 HOH A 21 1024 21 HOH HOH . F 4 HOH A 22 1025 22 HOH HOH . F 4 HOH A 23 1026 23 HOH HOH . F 4 HOH A 24 1027 24 HOH HOH . F 4 HOH A 25 1028 25 HOH HOH . F 4 HOH A 26 1029 26 HOH HOH . F 4 HOH A 27 1030 27 HOH HOH . F 4 HOH A 28 1031 28 HOH HOH . F 4 HOH A 29 1032 29 HOH HOH . F 4 HOH A 30 1033 30 HOH HOH . F 4 HOH A 31 1034 31 HOH HOH . F 4 HOH A 32 1035 32 HOH HOH . F 4 HOH A 33 1036 33 HOH HOH . F 4 HOH A 34 1037 34 HOH HOH . F 4 HOH A 35 1038 35 HOH HOH . F 4 HOH A 36 1039 36 HOH HOH . F 4 HOH A 37 1040 37 HOH HOH . F 4 HOH A 38 1041 38 HOH HOH . F 4 HOH A 39 1042 39 HOH HOH . F 4 HOH A 40 1043 40 HOH HOH . F 4 HOH A 41 1044 41 HOH HOH . F 4 HOH A 42 1045 42 HOH HOH . F 4 HOH A 43 1046 43 HOH HOH . F 4 HOH A 44 1047 44 HOH HOH . F 4 HOH A 45 1048 45 HOH HOH . F 4 HOH A 46 1049 46 HOH HOH . F 4 HOH A 47 1050 47 HOH HOH . F 4 HOH A 48 1051 48 HOH HOH . F 4 HOH A 49 1052 49 HOH HOH . F 4 HOH A 50 1053 50 HOH HOH . F 4 HOH A 51 1054 51 HOH HOH . F 4 HOH A 52 1055 52 HOH HOH . F 4 HOH A 53 1056 53 HOH HOH . F 4 HOH A 54 1057 54 HOH HOH . F 4 HOH A 55 1058 55 HOH HOH . F 4 HOH A 56 1059 56 HOH HOH . F 4 HOH A 57 1060 57 HOH HOH . F 4 HOH A 58 1061 58 HOH HOH . F 4 HOH A 59 1062 59 HOH HOH . F 4 HOH A 60 1063 60 HOH HOH . F 4 HOH A 61 1064 61 HOH HOH . F 4 HOH A 62 1065 62 HOH HOH . F 4 HOH A 63 1066 63 HOH HOH . F 4 HOH A 64 1067 64 HOH HOH . F 4 HOH A 65 1068 65 HOH HOH . F 4 HOH A 66 1069 66 HOH HOH . F 4 HOH A 67 1070 67 HOH HOH . F 4 HOH A 68 1071 68 HOH HOH . F 4 HOH A 69 1072 69 HOH HOH . F 4 HOH A 70 1073 70 HOH HOH . F 4 HOH A 71 1074 71 HOH HOH . F 4 HOH A 72 1075 72 HOH HOH . F 4 HOH A 73 1076 73 HOH HOH . F 4 HOH A 74 1077 74 HOH HOH . F 4 HOH A 75 1078 75 HOH HOH . F 4 HOH A 76 1079 76 HOH HOH . F 4 HOH A 77 1080 77 HOH HOH . F 4 HOH A 78 1081 78 HOH HOH . F 4 HOH A 79 1082 79 HOH HOH . F 4 HOH A 80 1083 80 HOH HOH . F 4 HOH A 81 1084 81 HOH HOH . F 4 HOH A 82 1085 82 HOH HOH . F 4 HOH A 83 1086 83 HOH HOH . F 4 HOH A 84 1087 84 HOH HOH . F 4 HOH A 85 1088 85 HOH HOH . F 4 HOH A 86 1089 86 HOH HOH . F 4 HOH A 87 1090 87 HOH HOH . F 4 HOH A 88 1091 88 HOH HOH . F 4 HOH A 89 1092 89 HOH HOH . F 4 HOH A 90 1093 90 HOH HOH . F 4 HOH A 91 1094 91 HOH HOH . F 4 HOH A 92 1095 92 HOH HOH . F 4 HOH A 93 1096 93 HOH HOH . F 4 HOH A 94 1097 94 HOH HOH . F 4 HOH A 95 1098 95 HOH HOH . F 4 HOH A 96 1099 96 HOH HOH . F 4 HOH A 97 1100 97 HOH HOH . F 4 HOH A 98 1101 98 HOH HOH . F 4 HOH A 99 1102 99 HOH HOH . F 4 HOH A 100 1103 100 HOH HOH . F 4 HOH A 101 1104 101 HOH HOH . F 4 HOH A 102 1105 102 HOH HOH . F 4 HOH A 103 1106 103 HOH HOH . F 4 HOH A 104 1107 104 HOH HOH . F 4 HOH A 105 1108 105 HOH HOH . F 4 HOH A 106 1109 106 HOH HOH . F 4 HOH A 107 1110 107 HOH HOH . F 4 HOH A 108 1111 108 HOH HOH . F 4 HOH A 109 1112 109 HOH HOH . F 4 HOH A 110 1113 110 HOH HOH . F 4 HOH A 111 1114 111 HOH HOH . F 4 HOH A 112 1115 112 HOH HOH . F 4 HOH A 113 1116 113 HOH HOH . F 4 HOH A 114 1117 114 HOH HOH . F 4 HOH A 115 1118 115 HOH HOH . F 4 HOH A 116 1119 116 HOH HOH . F 4 HOH A 117 1120 117 HOH HOH . F 4 HOH A 118 1121 118 HOH HOH . F 4 HOH A 119 1122 119 HOH HOH . F 4 HOH A 120 1123 120 HOH HOH . F 4 HOH A 121 1124 121 HOH HOH . F 4 HOH A 122 1125 122 HOH HOH . F 4 HOH A 123 1126 123 HOH HOH . F 4 HOH A 124 1127 124 HOH HOH . F 4 HOH A 125 1128 125 HOH HOH . F 4 HOH A 126 1129 126 HOH HOH . F 4 HOH A 127 1130 127 HOH HOH . F 4 HOH A 128 1131 128 HOH HOH . F 4 HOH A 129 1132 129 HOH HOH . F 4 HOH A 130 1133 130 HOH HOH . F 4 HOH A 131 1134 131 HOH HOH . F 4 HOH A 132 1135 132 HOH HOH . F 4 HOH A 133 1136 133 HOH HOH . F 4 HOH A 134 1137 134 HOH HOH . F 4 HOH A 135 1138 135 HOH HOH . F 4 HOH A 136 1139 136 HOH HOH . F 4 HOH A 137 1140 137 HOH HOH . F 4 HOH A 138 1141 138 HOH HOH . F 4 HOH A 139 1142 139 HOH HOH . F 4 HOH A 140 1143 140 HOH HOH . F 4 HOH A 141 1144 141 HOH HOH . F 4 HOH A 142 1145 142 HOH HOH . F 4 HOH A 143 1146 143 HOH HOH . F 4 HOH A 144 1147 144 HOH HOH . F 4 HOH A 145 1148 145 HOH HOH . F 4 HOH A 146 1149 146 HOH HOH . F 4 HOH A 147 1150 147 HOH HOH . F 4 HOH A 148 1151 148 HOH HOH . F 4 HOH A 149 1152 149 HOH HOH . F 4 HOH A 150 1153 150 HOH HOH . F 4 HOH A 151 1154 151 HOH HOH . F 4 HOH A 152 1155 152 HOH HOH . F 4 HOH A 153 1156 153 HOH HOH . F 4 HOH A 154 1157 154 HOH HOH . F 4 HOH A 155 1158 155 HOH HOH . F 4 HOH A 156 1159 156 HOH HOH . F 4 HOH A 157 1160 157 HOH HOH . F 4 HOH A 158 1161 158 HOH HOH . F 4 HOH A 159 1162 159 HOH HOH . F 4 HOH A 160 1163 160 HOH HOH . F 4 HOH A 161 1164 161 HOH HOH . F 4 HOH A 162 1165 162 HOH HOH . F 4 HOH A 163 1166 163 HOH HOH . F 4 HOH A 164 1167 164 HOH HOH . F 4 HOH A 165 1168 165 HOH HOH . F 4 HOH A 166 1169 166 HOH HOH . F 4 HOH A 167 1170 167 HOH HOH . F 4 HOH A 168 1171 168 HOH HOH . F 4 HOH A 169 1172 169 HOH HOH . F 4 HOH A 170 1173 170 HOH HOH . F 4 HOH A 171 1174 171 HOH HOH . F 4 HOH A 172 1175 172 HOH HOH . F 4 HOH A 173 1176 173 HOH HOH . F 4 HOH A 174 1177 174 HOH HOH . F 4 HOH A 175 1178 175 HOH HOH . F 4 HOH A 176 1179 176 HOH HOH . F 4 HOH A 177 1180 177 HOH HOH . F 4 HOH A 178 1181 178 HOH HOH . F 4 HOH A 179 1182 179 HOH HOH . F 4 HOH A 180 1183 180 HOH HOH . F 4 HOH A 181 1184 181 HOH HOH . F 4 HOH A 182 1185 182 HOH HOH . F 4 HOH A 183 1186 183 HOH HOH . F 4 HOH A 184 1187 184 HOH HOH . F 4 HOH A 185 1188 185 HOH HOH . F 4 HOH A 186 1189 186 HOH HOH . F 4 HOH A 187 1190 187 HOH HOH . F 4 HOH A 188 1191 188 HOH HOH . F 4 HOH A 189 1192 189 HOH HOH . F 4 HOH A 190 1193 190 HOH HOH . F 4 HOH A 191 1194 191 HOH HOH . F 4 HOH A 192 1195 192 HOH HOH . F 4 HOH A 193 1196 193 HOH HOH . F 4 HOH A 194 1197 194 HOH HOH . F 4 HOH A 195 1198 195 HOH HOH . F 4 HOH A 196 1199 196 HOH HOH . F 4 HOH A 197 1200 197 HOH HOH . F 4 HOH A 198 1201 198 HOH HOH . F 4 HOH A 199 1202 199 HOH HOH . F 4 HOH A 200 1203 200 HOH HOH . F 4 HOH A 201 1204 201 HOH HOH . F 4 HOH A 202 1205 202 HOH HOH . F 4 HOH A 203 1206 203 HOH HOH . F 4 HOH A 204 1207 204 HOH HOH . F 4 HOH A 205 1208 205 HOH HOH . F 4 HOH A 206 1209 206 HOH HOH . F 4 HOH A 207 1210 207 HOH HOH . F 4 HOH A 208 1211 208 HOH HOH . F 4 HOH A 209 1212 209 HOH HOH . F 4 HOH A 210 1213 210 HOH HOH . F 4 HOH A 211 1214 211 HOH HOH . F 4 HOH A 212 1215 212 HOH HOH . F 4 HOH A 213 1216 213 HOH HOH . F 4 HOH A 214 1217 214 HOH HOH . F 4 HOH A 215 1218 215 HOH HOH . F 4 HOH A 216 1219 216 HOH HOH . F 4 HOH A 217 1220 217 HOH HOH . F 4 HOH A 218 1221 218 HOH HOH . F 4 HOH A 219 1222 219 HOH HOH . F 4 HOH A 220 1223 220 HOH HOH . F 4 HOH A 221 1224 221 HOH HOH . F 4 HOH A 222 1225 222 HOH HOH . F 4 HOH A 223 1226 223 HOH HOH . F 4 HOH A 224 1227 224 HOH HOH . F 4 HOH A 225 1228 225 HOH HOH . F 4 HOH A 226 1229 226 HOH HOH . F 4 HOH A 227 1230 227 HOH HOH . F 4 HOH A 228 1231 228 HOH HOH . F 4 HOH A 229 1232 229 HOH HOH . F 4 HOH A 230 1233 230 HOH HOH . F 4 HOH A 231 1234 231 HOH HOH . F 4 HOH A 232 1235 232 HOH HOH . F 4 HOH A 233 1236 233 HOH HOH . F 4 HOH A 234 1237 234 HOH HOH . F 4 HOH A 235 1238 235 HOH HOH . F 4 HOH A 236 1239 236 HOH HOH . F 4 HOH A 237 1240 237 HOH HOH . F 4 HOH A 238 1241 238 HOH HOH . F 4 HOH A 239 1242 239 HOH HOH . F 4 HOH A 240 1243 240 HOH HOH . F 4 HOH A 241 1244 241 HOH HOH . F 4 HOH A 242 1245 242 HOH HOH . F 4 HOH A 243 1246 243 HOH HOH . F 4 HOH A 244 1247 244 HOH HOH . F 4 HOH A 245 1248 245 HOH HOH . F 4 HOH A 246 1249 246 HOH HOH . F 4 HOH A 247 1250 247 HOH HOH . F 4 HOH A 248 1251 248 HOH HOH . F 4 HOH A 249 1252 249 HOH HOH . F 4 HOH A 250 1253 250 HOH HOH . F 4 HOH A 251 1254 251 HOH HOH . F 4 HOH A 252 1255 252 HOH HOH . F 4 HOH A 253 1256 253 HOH HOH . F 4 HOH A 254 1257 254 HOH HOH . F 4 HOH A 255 1258 255 HOH HOH . F 4 HOH A 256 1259 256 HOH HOH . F 4 HOH A 257 1260 257 HOH HOH . F 4 HOH A 258 1261 258 HOH HOH . F 4 HOH A 259 1262 259 HOH HOH . F 4 HOH A 260 1263 260 HOH HOH . F 4 HOH A 261 1264 261 HOH HOH . F 4 HOH A 262 1265 262 HOH HOH . F 4 HOH A 263 1266 263 HOH HOH . F 4 HOH A 264 1267 264 HOH HOH . F 4 HOH A 265 1268 265 HOH HOH . F 4 HOH A 266 1269 266 HOH HOH . F 4 HOH A 267 1270 267 HOH HOH . F 4 HOH A 268 1271 268 HOH HOH . F 4 HOH A 269 1272 269 HOH HOH . F 4 HOH A 270 1273 270 HOH HOH . F 4 HOH A 271 1274 271 HOH HOH . F 4 HOH A 272 1275 272 HOH HOH . F 4 HOH A 273 1276 273 HOH HOH . F 4 HOH A 274 1277 274 HOH HOH . F 4 HOH A 275 1278 275 HOH HOH . F 4 HOH A 276 1279 276 HOH HOH . F 4 HOH A 277 1280 277 HOH HOH . F 4 HOH A 278 1281 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 46.817 30.797 18.578 1 47.61 ? P PO4 1003 A 1 HETATM 2 O O1 PO4 . . . D 2 46.594 31.973 19.451 1 48.96 ? O1 PO4 1003 A 1 HETATM 3 O O2 PO4 . . . D 2 46.481 29.555 19.32 1 49.01 ? O2 PO4 1003 A 1 HETATM 4 O O3 PO4 . . . D 2 45.954 30.893 17.372 1 48.34 ? O3 PO4 1003 A 1 HETATM 5 O O4 PO4 . . . D 2 48.239 30.758 18.166 1 49 ? O4 PO4 1003 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #