data_1CYC
#
_model_server_result.job_id            OqW4bTGn1Se3gZWqSyB0RA 
_model_server_result.datetime_utc      '2024-11-18 11:53:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cyc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":104}' 
#
_entry.id    1CYC 
#
_exptl.entry_id    1CYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1CYC 
_cell.length_a            57.68 
_cell.length_b            84.58 
_cell.length_c            37.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 14 A CYS 14 1_555 C CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
covale ? covale2 A SG CYS 17 A CYS 17 1_555 C CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
covale ? covale3 A CE2 TYR 48 A TYR 48 1_555 C O2D HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
covale ? covale4 B SG CYS 14 B CYS 14 1_555 D CAB HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
covale ? covale5 B SG CYS 17 B CYS 17 1_555 D CAC HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
covale ? covale6 B CE2 TYR 48 B TYR 48 1_555 D O2D HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc2 A SD MET 80 A MET 80 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc3 B NE2 HIS 18 B HIS 18 1_555 D FE HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc4 B SD MET 80 B MET 80 1_555 D FE HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1CYC 
_atom_sites.fract_transf_matrix[1][1]    0.017337 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026434 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 104 1 HEC HEM . 
D 2 HEC B 1 104 1 HEC HEM . 
E 3 HOH A 1 105 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . D 2 13.624 5.773 12.701 1 0 ? FE HEC 104 B 1 
HETATM 2 C CHA HEC . . . D 2 11.86 6.466 15.347 1 0 ? CHA HEC 104 B 1 
HETATM 3 C CHB HEC . . . D 2 12.364 8.293 11.189 1 0 ? CHB HEC 104 B 1 
HETATM 4 C CHC HEC . . . D 2 15.262 5.017 9.929 1 0 ? CHC HEC 104 B 1 
HETATM 5 C CHD HEC . . . D 2 14.884 3.127 14.339 1 0 ? CHD HEC 104 B 1 
HETATM 6 N NA HEC . . . D 2 12.364 7.096 13.205 1 0 ? NA HEC 104 B 1 
HETATM 7 C C1A HEC . . . D 2 11.734 7.159 14.465 1 0 ? C1A HEC 104 B 1 
HETATM 8 C C2A HEC . . . D 2 10.978 8.167 14.591 1 0 ? C2A HEC 104 B 1 
HETATM 9 C C3A HEC . . . D 2 11.104 8.797 13.205 1 0 ? C3A HEC 104 B 1 
HETATM 10 C C4A HEC . . . D 2 11.726 8.167 12.323 1 0 ? C4A HEC 104 B 1 
HETATM 11 C CMA HEC . . . D 2 10.537 10.057 12.701 1 0 ? CMA HEC 104 B 1 
HETATM 12 C CAA HEC . . . D 2 10.222 8.167 15.599 1 0 ? CAA HEC 104 B 1 
HETATM 13 C CBA HEC . . . D 2 8.773 8.734 15.473 1 0 ? CBA HEC 104 B 1 
HETATM 14 C CGA HEC . . . D 2 8.017 8.734 16.859 1 0 ? CGA HEC 104 B 1 
HETATM 15 O O1A HEC . . . D 2 7.135 8.041 17.111 1 0 ? O1A HEC 104 B 1 
HETATM 16 O O2A HEC . . . D 2 8.332 9.49 17.741 1 0 ? O2A HEC 104 B 1 
HETATM 17 N NB HEC . . . D 2 13.75 6.466 11.126 1 0 ? NB HEC 104 B 1 
HETATM 18 C C1B HEC . . . D 2 13.246 7.348 10.559 1 0 ? C1B HEC 104 B 1 
HETATM 19 C C2B HEC . . . D 2 13.624 7.663 9.299 1 0 ? C2B HEC 104 B 1 
HETATM 20 C C3B HEC . . . D 2 14.506 6.592 8.921 1 0 ? C3B HEC 104 B 1 
HETATM 21 C C4B HEC . . . D 2 14.506 6.025 9.929 1 0 ? C4B HEC 104 B 1 
HETATM 22 C CMB HEC . . . D 2 13.183 8.797 8.543 1 0 ? CMB HEC 104 B 1 
HETATM 23 C CAB HEC . . . D 2 15.262 6.781 7.409 1 0 ? CAB HEC 104 B 1 
HETATM 24 C CBB HEC . . . D 2 16.27 7.663 7.661 1 0 ? CBB HEC 104 B 1 
HETATM 25 N NC HEC . . . D 2 14.884 4.387 12.197 1 0 ? NC HEC 104 B 1 
HETATM 26 C C1C HEC . . . D 2 15.388 4.261 10.811 1 0 ? C1C HEC 104 B 1 
HETATM 27 C C2C HEC . . . D 2 16.081 3.001 10.811 1 0 ? C2C HEC 104 B 1 
HETATM 28 C C3C HEC . . . D 2 15.892 2.623 11.945 1 0 ? C3C HEC 104 B 1 
HETATM 29 C C4C HEC . . . D 2 15.136 3.379 12.953 1 0 ? C4C HEC 104 B 1 
HETATM 30 C CMC HEC . . . D 2 17.152 2.497 9.803 1 0 ? CMC HEC 104 B 1 
HETATM 31 C CAC HEC . . . D 2 16.396 1.111 12.197 1 0 ? CAC HEC 104 B 1 
HETATM 32 C CBC HEC . . . D 2 17.656 0.859 12.008 1 0 ? CBC HEC 104 B 1 
HETATM 33 N ND HEC . . . D 2 13.435 5.143 14.213 1 0 ? ND HEC 104 B 1 
HETATM 34 C C1D HEC . . . D 2 14.002 4.009 14.843 1 0 ? C1D HEC 104 B 1 
HETATM 35 C C2D HEC . . . D 2 13.624 3.757 15.977 1 0 ? C2D HEC 104 B 1 
HETATM 36 C C3D HEC . . . D 2 12.742 4.765 16.355 1 0 ? C3D HEC 104 B 1 
HETATM 37 C C4D HEC . . . D 2 12.679 5.395 15.347 1 0 ? C4D HEC 104 B 1 
HETATM 38 C CMD HEC . . . D 2 14.002 2.749 16.733 1 0 ? CMD HEC 104 B 1 
HETATM 39 C CAD HEC . . . D 2 11.986 4.513 17.615 1 0 ? CAD HEC 104 B 1 
HETATM 40 C CBD HEC . . . D 2 12.742 4.135 18.623 1 0 ? CBD HEC 104 B 1 
HETATM 41 C CGD HEC . . . D 2 13.624 5.017 19.505 1 0 ? CGD HEC 104 B 1 
HETATM 42 O O1D HEC . . . D 2 14.758 5.773 18.56 1 0 ? O1D HEC 104 B 1 
HETATM 43 O O2D HEC . . . D 2 13.435 5.647 20.639 1 0 ? O2D HEC 104 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#