data_1CYG # _model_server_result.job_id IyCAZLlcrJFYhNdblF3EeQ _model_server_result.datetime_utc '2025-04-25 12:11:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":681}' # _entry.id 1CYG # _exptl.entry_id 1CYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CYG _cell.length_a 121.5 _cell.length_b 88 _cell.length_c 78.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 40 A CYS 40 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 A OD1 ASP 24 A ASP 24 1_555 C CA CA . A CA 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc2 A O ASN 26 A ASN 26 1_555 C CA CA . A CA 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 A OD1 ASN 29 A ASN 29 1_555 C CA CA . A CA 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 A OD1 ASN 30 A ASN 30 1_555 C CA CA . A CA 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A O GLY 48 A GLY 48 1_555 C CA CA . A CA 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc6 A OD2 ASP 50 A ASP 50 1_555 C CA CA . A CA 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 A OD1 ASN 135 A ASN 135 1_555 B CA CA . A CA 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc8 A O ILE 186 A ILE 186 1_555 B CA CA . A CA 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc9 A OD1 ASP 195 A ASP 195 1_555 B CA CA . A CA 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc10 A OD2 ASP 195 A ASP 195 1_555 B CA CA . A CA 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc11 A O HIS 229 A HIS 229 1_555 B CA CA . A CA 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc12 B CA CA . A CA 681 1_555 D O HOH . A HOH 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc13 B CA CA . A CA 681 1_555 D O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.325 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CYG _atom_sites.fract_transf_matrix[1][1] 0.00823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 681 681 CA CA . C 2 CA A 1 682 682 CA CA . D 3 HOH A 1 683 683 HOH HOH . D 3 HOH A 2 684 684 HOH HOH . D 3 HOH A 3 685 685 HOH HOH . D 3 HOH A 4 686 686 HOH HOH . D 3 HOH A 5 687 687 HOH HOH . D 3 HOH A 6 688 688 HOH HOH . D 3 HOH A 7 689 689 HOH HOH . D 3 HOH A 8 690 690 HOH HOH . D 3 HOH A 9 691 691 HOH HOH . D 3 HOH A 10 692 692 HOH HOH . D 3 HOH A 11 693 693 HOH HOH . D 3 HOH A 12 694 694 HOH HOH . D 3 HOH A 13 695 695 HOH HOH . D 3 HOH A 14 696 696 HOH HOH . D 3 HOH A 15 697 697 HOH HOH . D 3 HOH A 16 698 698 HOH HOH . D 3 HOH A 17 699 699 HOH HOH . D 3 HOH A 18 700 700 HOH HOH . D 3 HOH A 19 701 701 HOH HOH . D 3 HOH A 20 702 702 HOH HOH . D 3 HOH A 21 703 703 HOH HOH . D 3 HOH A 22 704 704 HOH HOH . D 3 HOH A 23 705 705 HOH HOH . D 3 HOH A 24 706 706 HOH HOH . D 3 HOH A 25 707 707 HOH HOH . D 3 HOH A 26 708 708 HOH HOH . D 3 HOH A 27 709 709 HOH HOH . D 3 HOH A 28 710 710 HOH HOH . D 3 HOH A 29 711 711 HOH HOH . D 3 HOH A 30 712 712 HOH HOH . D 3 HOH A 31 713 713 HOH HOH . D 3 HOH A 32 714 714 HOH HOH . D 3 HOH A 33 715 715 HOH HOH . D 3 HOH A 34 716 716 HOH HOH . D 3 HOH A 35 717 717 HOH HOH . D 3 HOH A 36 718 718 HOH HOH . D 3 HOH A 37 719 719 HOH HOH . D 3 HOH A 38 720 720 HOH HOH . D 3 HOH A 39 721 721 HOH HOH . D 3 HOH A 40 722 722 HOH HOH . D 3 HOH A 41 723 723 HOH HOH . D 3 HOH A 42 724 724 HOH HOH . D 3 HOH A 43 725 725 HOH HOH . D 3 HOH A 44 726 726 HOH HOH . D 3 HOH A 45 727 727 HOH HOH . D 3 HOH A 46 728 728 HOH HOH . D 3 HOH A 47 729 729 HOH HOH . D 3 HOH A 48 730 730 HOH HOH . D 3 HOH A 49 731 731 HOH HOH . D 3 HOH A 50 732 732 HOH HOH . D 3 HOH A 51 733 733 HOH HOH . D 3 HOH A 52 734 734 HOH HOH . D 3 HOH A 53 735 735 HOH HOH . D 3 HOH A 54 736 736 HOH HOH . D 3 HOH A 55 737 737 HOH HOH . D 3 HOH A 56 738 738 HOH HOH . D 3 HOH A 57 739 739 HOH HOH . D 3 HOH A 58 740 740 HOH HOH . D 3 HOH A 59 741 741 HOH HOH . D 3 HOH A 60 742 742 HOH HOH . D 3 HOH A 61 743 743 HOH HOH . D 3 HOH A 62 744 744 HOH HOH . D 3 HOH A 63 745 745 HOH HOH . D 3 HOH A 64 746 746 HOH HOH . D 3 HOH A 65 747 747 HOH HOH . D 3 HOH A 66 748 748 HOH HOH . D 3 HOH A 67 749 749 HOH HOH . D 3 HOH A 68 750 750 HOH HOH . D 3 HOH A 69 751 751 HOH HOH . D 3 HOH A 70 752 752 HOH HOH . D 3 HOH A 71 753 753 HOH HOH . D 3 HOH A 72 754 754 HOH HOH . D 3 HOH A 73 755 755 HOH HOH . D 3 HOH A 74 756 756 HOH HOH . D 3 HOH A 75 757 757 HOH HOH . D 3 HOH A 76 758 758 HOH HOH . D 3 HOH A 77 759 759 HOH HOH . D 3 HOH A 78 760 760 HOH HOH . D 3 HOH A 79 761 761 HOH HOH . D 3 HOH A 80 762 762 HOH HOH . D 3 HOH A 81 763 763 HOH HOH . D 3 HOH A 82 764 764 HOH HOH . D 3 HOH A 83 765 765 HOH HOH . D 3 HOH A 84 766 766 HOH HOH . D 3 HOH A 85 767 767 HOH HOH . D 3 HOH A 86 768 768 HOH HOH . D 3 HOH A 87 769 769 HOH HOH . D 3 HOH A 88 770 770 HOH HOH . D 3 HOH A 89 771 771 HOH HOH . D 3 HOH A 90 772 772 HOH HOH . D 3 HOH A 91 773 773 HOH HOH . D 3 HOH A 92 774 774 HOH HOH . D 3 HOH A 93 775 775 HOH HOH . D 3 HOH A 94 776 776 HOH HOH . D 3 HOH A 95 777 777 HOH HOH . D 3 HOH A 96 778 778 HOH HOH . D 3 HOH A 97 779 779 HOH HOH . D 3 HOH A 98 780 780 HOH HOH . D 3 HOH A 99 781 781 HOH HOH . D 3 HOH A 100 782 782 HOH HOH . D 3 HOH A 101 783 783 HOH HOH . D 3 HOH A 102 784 784 HOH HOH . D 3 HOH A 103 785 785 HOH HOH . D 3 HOH A 104 786 786 HOH HOH . D 3 HOH A 105 787 787 HOH HOH . D 3 HOH A 106 788 788 HOH HOH . D 3 HOH A 107 789 789 HOH HOH . D 3 HOH A 108 790 790 HOH HOH . D 3 HOH A 109 791 791 HOH HOH . D 3 HOH A 110 792 792 HOH HOH . D 3 HOH A 111 793 793 HOH HOH . D 3 HOH A 112 794 794 HOH HOH . D 3 HOH A 113 795 795 HOH HOH . D 3 HOH A 114 796 796 HOH HOH . D 3 HOH A 115 797 797 HOH HOH . D 3 HOH A 116 798 798 HOH HOH . D 3 HOH A 117 799 799 HOH HOH . D 3 HOH A 118 800 800 HOH HOH . D 3 HOH A 119 801 801 HOH HOH . D 3 HOH A 120 802 802 HOH HOH . D 3 HOH A 121 803 803 HOH HOH . D 3 HOH A 122 804 804 HOH HOH . D 3 HOH A 123 805 805 HOH HOH . D 3 HOH A 124 806 806 HOH HOH . D 3 HOH A 125 807 807 HOH HOH . D 3 HOH A 126 808 808 HOH HOH . D 3 HOH A 127 809 809 HOH HOH . D 3 HOH A 128 810 810 HOH HOH . D 3 HOH A 129 811 811 HOH HOH . D 3 HOH A 130 812 812 HOH HOH . D 3 HOH A 131 813 813 HOH HOH . D 3 HOH A 132 814 814 HOH HOH . D 3 HOH A 133 815 815 HOH HOH . D 3 HOH A 134 816 816 HOH HOH . D 3 HOH A 135 817 817 HOH HOH . D 3 HOH A 136 818 818 HOH HOH . D 3 HOH A 137 819 819 HOH HOH . D 3 HOH A 138 820 820 HOH HOH . D 3 HOH A 139 821 821 HOH HOH . D 3 HOH A 140 822 822 HOH HOH . D 3 HOH A 141 823 823 HOH HOH . D 3 HOH A 142 824 824 HOH HOH . D 3 HOH A 143 825 825 HOH HOH . D 3 HOH A 144 826 826 HOH HOH . D 3 HOH A 145 827 827 HOH HOH . D 3 HOH A 146 828 828 HOH HOH . D 3 HOH A 147 829 829 HOH HOH . D 3 HOH A 148 830 830 HOH HOH . D 3 HOH A 149 831 831 HOH HOH . D 3 HOH A 150 832 832 HOH HOH . D 3 HOH A 151 833 833 HOH HOH . D 3 HOH A 152 834 834 HOH HOH . D 3 HOH A 153 835 835 HOH HOH . D 3 HOH A 154 836 836 HOH HOH . D 3 HOH A 155 837 837 HOH HOH . D 3 HOH A 156 838 838 HOH HOH . D 3 HOH A 157 839 839 HOH HOH . D 3 HOH A 158 840 840 HOH HOH . D 3 HOH A 159 841 841 HOH HOH . D 3 HOH A 160 842 842 HOH HOH . D 3 HOH A 161 843 843 HOH HOH . D 3 HOH A 162 844 844 HOH HOH . D 3 HOH A 163 845 845 HOH HOH . D 3 HOH A 164 846 846 HOH HOH . D 3 HOH A 165 847 847 HOH HOH . D 3 HOH A 166 848 848 HOH HOH . D 3 HOH A 167 849 849 HOH HOH . D 3 HOH A 168 850 850 HOH HOH . D 3 HOH A 169 851 851 HOH HOH . D 3 HOH A 170 852 852 HOH HOH . D 3 HOH A 171 853 853 HOH HOH . D 3 HOH A 172 854 854 HOH HOH . D 3 HOH A 173 855 855 HOH HOH . D 3 HOH A 174 856 856 HOH HOH . D 3 HOH A 175 857 857 HOH HOH . D 3 HOH A 176 858 858 HOH HOH . D 3 HOH A 177 859 859 HOH HOH . D 3 HOH A 178 860 860 HOH HOH . D 3 HOH A 179 861 861 HOH HOH . D 3 HOH A 180 862 862 HOH HOH . D 3 HOH A 181 863 863 HOH HOH . D 3 HOH A 182 864 864 HOH HOH . D 3 HOH A 183 865 865 HOH HOH . D 3 HOH A 184 866 866 HOH HOH . D 3 HOH A 185 867 867 HOH HOH . D 3 HOH A 186 868 868 HOH HOH . D 3 HOH A 187 869 869 HOH HOH . D 3 HOH A 188 870 870 HOH HOH . D 3 HOH A 189 871 871 HOH HOH . D 3 HOH A 190 872 872 HOH HOH . D 3 HOH A 191 873 873 HOH HOH . D 3 HOH A 192 874 874 HOH HOH . D 3 HOH A 193 875 875 HOH HOH . D 3 HOH A 194 876 876 HOH HOH . D 3 HOH A 195 877 877 HOH HOH . D 3 HOH A 196 878 878 HOH HOH . D 3 HOH A 197 879 879 HOH HOH . D 3 HOH A 198 880 880 HOH HOH . D 3 HOH A 199 881 881 HOH HOH . D 3 HOH A 200 882 882 HOH HOH . D 3 HOH A 201 883 883 HOH HOH . D 3 HOH A 202 884 884 HOH HOH . D 3 HOH A 203 885 885 HOH HOH . D 3 HOH A 204 886 886 HOH HOH . D 3 HOH A 205 887 887 HOH HOH . D 3 HOH A 206 888 888 HOH HOH . D 3 HOH A 207 889 889 HOH HOH . D 3 HOH A 208 890 890 HOH HOH . D 3 HOH A 209 891 891 HOH HOH . D 3 HOH A 210 892 892 HOH HOH . D 3 HOH A 211 893 893 HOH HOH . D 3 HOH A 212 894 894 HOH HOH . D 3 HOH A 213 895 895 HOH HOH . D 3 HOH A 214 896 896 HOH HOH . D 3 HOH A 215 897 897 HOH HOH . D 3 HOH A 216 898 898 HOH HOH . D 3 HOH A 217 899 899 HOH HOH . D 3 HOH A 218 900 900 HOH HOH . D 3 HOH A 219 901 901 HOH HOH . D 3 HOH A 220 902 902 HOH HOH . D 3 HOH A 221 903 903 HOH HOH . D 3 HOH A 222 904 904 HOH HOH . D 3 HOH A 223 905 905 HOH HOH . D 3 HOH A 224 906 906 HOH HOH . D 3 HOH A 225 907 907 HOH HOH . D 3 HOH A 226 908 908 HOH HOH . D 3 HOH A 227 909 909 HOH HOH . D 3 HOH A 228 910 910 HOH HOH . D 3 HOH A 229 911 911 HOH HOH . D 3 HOH A 230 912 912 HOH HOH . D 3 HOH A 231 913 913 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 31.554 _atom_site.Cartn_y 125.095 _atom_site.Cartn_z 47.291 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 681 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #