data_1CYI # _model_server_result.job_id Qfl_5r8INTuynqHrdxrILA _model_server_result.datetime_utc '2024-11-05 09:34:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":200}' # _entry.id 1CYI # _exptl.entry_id 1CYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CYI _cell.length_a 82.6 _cell.length_b 82.6 _cell.length_c 82.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 F CAB HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 F CAC HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 F FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A OE2 GLU 37 A GLU 37 21_545 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc3 A OD1 ASP 41 A ASP 41 22_546 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc4 A OD2 ASP 41 A ASP 41 22_546 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 A SD MET 60 A MET 60 1_555 F FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 A OE1 GLU 69 A GLU 69 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 A OE1 GLU 69 A GLU 69 3_657 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc10 A OE2 GLU 71 A GLU 71 1_555 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 A OE1 GLU 71 A GLU 71 1_555 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc12 B CD CD . A CD 300 1_555 G O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc13 B CD CD . A CD 300 1_555 G O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc14 C CD CD . A CD 301 1_555 G O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C CD CD . A CD 301 1_555 G O HOH . A HOH 419 21_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc16 D CD CD . A CD 302 1_555 G O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc17 D CD CD . A CD 302 1_555 G O HOH . A HOH 402 3_657 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc18 D CD CD . A CD 302 1_555 G O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc19 D CD CD . A CD 302 1_555 G O HOH . A HOH 463 3_657 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc20 E CD CD . A CD 303 1_555 G O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc21 E CD CD . A CD 303 1_555 G O HOH . A HOH 423 17_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc22 E CD CD . A CD 303 1_555 G O HOH . A HOH 453 17_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1CYI _atom_sites.fract_transf_matrix[1][1] 0.012107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 300 300 CD CD . C 2 CD A 1 301 301 CD CD . D 2 CD A 1 302 302 CD CD . E 2 CD A 1 303 303 CD CD . F 3 HEC A 1 200 200 HEC HEM . G 4 HOH A 1 400 400 HOH HOH . G 4 HOH A 2 401 401 HOH HOH . G 4 HOH A 3 402 402 HOH HOH . G 4 HOH A 4 403 403 HOH HOH . G 4 HOH A 5 404 404 HOH HOH . G 4 HOH A 6 405 405 HOH HOH . G 4 HOH A 7 406 406 HOH HOH . G 4 HOH A 8 407 407 HOH HOH . G 4 HOH A 9 408 408 HOH HOH . G 4 HOH A 10 409 409 HOH HOH . G 4 HOH A 11 410 410 HOH HOH . G 4 HOH A 12 411 411 HOH HOH . G 4 HOH A 13 412 412 HOH HOH . G 4 HOH A 14 413 413 HOH HOH . G 4 HOH A 15 414 414 HOH HOH . G 4 HOH A 16 415 415 HOH HOH . G 4 HOH A 17 416 416 HOH HOH . G 4 HOH A 18 417 417 HOH HOH . G 4 HOH A 19 418 418 HOH HOH . G 4 HOH A 20 419 419 HOH HOH . G 4 HOH A 21 420 420 HOH HOH . G 4 HOH A 22 421 421 HOH HOH . G 4 HOH A 23 422 422 HOH HOH . G 4 HOH A 24 423 423 HOH HOH . G 4 HOH A 25 424 424 HOH HOH . G 4 HOH A 26 425 425 HOH HOH . G 4 HOH A 27 426 426 HOH HOH . G 4 HOH A 28 427 427 HOH HOH . G 4 HOH A 29 428 428 HOH HOH . G 4 HOH A 30 429 429 HOH HOH . G 4 HOH A 31 430 430 HOH HOH . G 4 HOH A 32 431 431 HOH HOH . G 4 HOH A 33 432 432 HOH HOH . G 4 HOH A 34 433 433 HOH HOH . G 4 HOH A 35 434 434 HOH HOH . G 4 HOH A 36 435 435 HOH HOH . G 4 HOH A 37 436 436 HOH HOH . G 4 HOH A 38 437 437 HOH HOH . G 4 HOH A 39 438 438 HOH HOH . G 4 HOH A 40 439 439 HOH HOH . G 4 HOH A 41 440 440 HOH HOH . G 4 HOH A 42 441 441 HOH HOH . G 4 HOH A 43 442 442 HOH HOH . G 4 HOH A 44 443 443 HOH HOH . G 4 HOH A 45 444 444 HOH HOH . G 4 HOH A 46 445 445 HOH HOH . G 4 HOH A 47 446 446 HOH HOH . G 4 HOH A 48 447 447 HOH HOH . G 4 HOH A 49 448 448 HOH HOH . G 4 HOH A 50 449 449 HOH HOH . G 4 HOH A 51 450 450 HOH HOH . G 4 HOH A 52 451 451 HOH HOH . G 4 HOH A 53 452 452 HOH HOH . G 4 HOH A 54 453 453 HOH HOH . G 4 HOH A 55 454 454 HOH HOH . G 4 HOH A 56 455 455 HOH HOH . G 4 HOH A 57 456 456 HOH HOH . G 4 HOH A 58 457 457 HOH HOH . G 4 HOH A 59 458 458 HOH HOH . G 4 HOH A 60 459 459 HOH HOH . G 4 HOH A 61 460 460 HOH HOH . G 4 HOH A 62 461 461 HOH HOH . G 4 HOH A 63 462 462 HOH HOH . G 4 HOH A 64 463 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . F 3 27.919 14.065 67.502 1 16.61 ? FE HEC 200 A 1 HETATM 2 C CHA HEC . . . F 3 29.982 12.891 65.089 1 17.77 ? CHA HEC 200 A 1 HETATM 3 C CHB HEC . . . F 3 29.474 12.081 69.913 1 14.89 ? CHB HEC 200 A 1 HETATM 4 C CHC HEC . . . F 3 26.031 15.497 69.994 1 14.18 ? CHC HEC 200 A 1 HETATM 5 C CHD HEC . . . F 3 25.99 15.742 65.199 1 13.86 ? CHD HEC 200 A 1 HETATM 6 N NA HEC . . . F 3 29.36 12.717 67.446 1 15.73 ? NA HEC 200 A 1 HETATM 7 C C1A HEC . . . F 3 30.076 12.299 66.372 1 17.69 ? C1A HEC 200 A 1 HETATM 8 C C2A HEC . . . F 3 31.008 11.346 66.766 1 19.19 ? C2A HEC 200 A 1 HETATM 9 C C3A HEC . . . F 3 30.956 11.198 68.12 1 15.29 ? C3A HEC 200 A 1 HETATM 10 C C4A HEC . . . F 3 29.924 12.022 68.541 1 15.24 ? C4A HEC 200 A 1 HETATM 11 C CMA HEC . . . F 3 31.793 10.385 69.086 1 15.84 ? CMA HEC 200 A 1 HETATM 12 C CAA HEC . . . F 3 31.903 10.623 65.773 1 14.2 ? CAA HEC 200 A 1 HETATM 13 C CBA HEC . . . F 3 31.099 9.58 65.019 1 18.59 ? CBA HEC 200 A 1 HETATM 14 C CGA HEC . . . F 3 31.881 8.96 63.882 1 18.41 ? CGA HEC 200 A 1 HETATM 15 O O1A HEC . . . F 3 32.901 9.523 63.468 1 20.06 ? O1A HEC 200 A 1 HETATM 16 O O2A HEC . . . F 3 31.468 7.914 63.372 1 17.77 ? O2A HEC 200 A 1 HETATM 17 N NB HEC . . . F 3 27.822 13.924 69.548 1 14.48 ? NB HEC 200 A 1 HETATM 18 C C1B HEC . . . F 3 28.488 13.016 70.357 1 18.11 ? C1B HEC 200 A 1 HETATM 19 C C2B HEC . . . F 3 28.064 13.145 71.693 1 13.51 ? C2B HEC 200 A 1 HETATM 20 C C3B HEC . . . F 3 27.118 14.145 71.781 1 16.41 ? C3B HEC 200 A 1 HETATM 21 C C4B HEC . . . F 3 27.021 14.622 70.429 1 13.44 ? C4B HEC 200 A 1 HETATM 22 C CMB HEC . . . F 3 28.593 12.163 72.767 1 14.36 ? CMB HEC 200 A 1 HETATM 23 C CAB HEC . . . F 3 26.379 14.619 72.905 1 15 ? CAB HEC 200 A 1 HETATM 24 C CBB HEC . . . F 3 26.977 15.462 73.829 1 17.51 ? CBB HEC 200 A 1 HETATM 25 N NC HEC . . . F 3 26.361 15.416 67.543 1 12.32 ? NC HEC 200 A 1 HETATM 26 C C1C HEC . . . F 3 25.673 15.861 68.67 1 16.98 ? C1C HEC 200 A 1 HETATM 27 C C2C HEC . . . F 3 24.466 16.66 68.352 1 19.02 ? C2C HEC 200 A 1 HETATM 28 C C3C HEC . . . F 3 24.534 16.705 66.991 1 12.71 ? C3C HEC 200 A 1 HETATM 29 C C4C HEC . . . F 3 25.654 15.942 66.521 1 12.2 ? C4C HEC 200 A 1 HETATM 30 C CMC HEC . . . F 3 23.235 17.013 69.242 1 10.35 ? CMC HEC 200 A 1 HETATM 31 C CAC HEC . . . F 3 23.548 17.283 66.185 1 16.97 ? CAC HEC 200 A 1 HETATM 32 C CBC HEC . . . F 3 23.306 18.744 66.16 1 17.95 ? CBC HEC 200 A 1 HETATM 33 N ND HEC . . . F 3 27.993 14.323 65.611 1 16.07 ? ND HEC 200 A 1 HETATM 34 C C1D HEC . . . F 3 27.127 15.061 64.776 1 16.27 ? C1D HEC 200 A 1 HETATM 35 C C2D HEC . . . F 3 27.717 15.184 63.446 1 11.66 ? C2D HEC 200 A 1 HETATM 36 C C3D HEC . . . F 3 28.876 14.464 63.524 1 14.07 ? C3D HEC 200 A 1 HETATM 37 C C4D HEC . . . F 3 29.034 13.895 64.779 1 12.02 ? C4D HEC 200 A 1 HETATM 38 C CMD HEC . . . F 3 27.132 16.008 62.32 1 14.75 ? CMD HEC 200 A 1 HETATM 39 C CAD HEC . . . F 3 29.895 14.187 62.495 1 12.84 ? CAD HEC 200 A 1 HETATM 40 C CBD HEC . . . F 3 30.81 15.383 62.414 1 17.21 ? CBD HEC 200 A 1 HETATM 41 C CGD HEC . . . F 3 31.659 15.324 61.189 1 23.83 ? CGD HEC 200 A 1 HETATM 42 O O1D HEC . . . F 3 32.504 14.409 61.127 1 25.7 ? O1D HEC 200 A 1 HETATM 43 O O2D HEC . . . F 3 31.454 16.149 60.274 1 27.4 ? O2D HEC 200 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #