data_1CYI # _model_server_result.job_id rFgyad0RjIHJc-bY571VfA _model_server_result.datetime_utc '2024-11-21 23:58:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1CYI # _exptl.entry_id 1CYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CYI _cell.length_a 82.6 _cell.length_b 82.6 _cell.length_c 82.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 F CAB HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 F CAC HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 F FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A OE2 GLU 37 A GLU 37 21_545 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc3 A OD1 ASP 41 A ASP 41 22_546 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc4 A OD2 ASP 41 A ASP 41 22_546 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 A SD MET 60 A MET 60 1_555 F FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 A OE1 GLU 69 A GLU 69 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 A OE1 GLU 69 A GLU 69 3_657 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc10 A OE2 GLU 71 A GLU 71 1_555 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 A OE1 GLU 71 A GLU 71 1_555 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc12 B CD CD . A CD 300 1_555 G O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc13 B CD CD . A CD 300 1_555 G O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc14 C CD CD . A CD 301 1_555 G O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C CD CD . A CD 301 1_555 G O HOH . A HOH 419 21_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc16 D CD CD . A CD 302 1_555 G O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc17 D CD CD . A CD 302 1_555 G O HOH . A HOH 402 3_657 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc18 D CD CD . A CD 302 1_555 G O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc19 D CD CD . A CD 302 1_555 G O HOH . A HOH 463 3_657 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc20 E CD CD . A CD 303 1_555 G O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc21 E CD CD . A CD 303 1_555 G O HOH . A HOH 423 17_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc22 E CD CD . A CD 303 1_555 G O HOH . A HOH 453 17_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CYI _atom_sites.fract_transf_matrix[1][1] 0.012107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 300 300 CD CD . C 2 CD A 1 301 301 CD CD . D 2 CD A 1 302 302 CD CD . E 2 CD A 1 303 303 CD CD . F 3 HEC A 1 200 200 HEC HEM . G 4 HOH A 1 400 400 HOH HOH . G 4 HOH A 2 401 401 HOH HOH . G 4 HOH A 3 402 402 HOH HOH . G 4 HOH A 4 403 403 HOH HOH . G 4 HOH A 5 404 404 HOH HOH . G 4 HOH A 6 405 405 HOH HOH . G 4 HOH A 7 406 406 HOH HOH . G 4 HOH A 8 407 407 HOH HOH . G 4 HOH A 9 408 408 HOH HOH . G 4 HOH A 10 409 409 HOH HOH . G 4 HOH A 11 410 410 HOH HOH . G 4 HOH A 12 411 411 HOH HOH . G 4 HOH A 13 412 412 HOH HOH . G 4 HOH A 14 413 413 HOH HOH . G 4 HOH A 15 414 414 HOH HOH . G 4 HOH A 16 415 415 HOH HOH . G 4 HOH A 17 416 416 HOH HOH . G 4 HOH A 18 417 417 HOH HOH . G 4 HOH A 19 418 418 HOH HOH . G 4 HOH A 20 419 419 HOH HOH . G 4 HOH A 21 420 420 HOH HOH . G 4 HOH A 22 421 421 HOH HOH . G 4 HOH A 23 422 422 HOH HOH . G 4 HOH A 24 423 423 HOH HOH . G 4 HOH A 25 424 424 HOH HOH . G 4 HOH A 26 425 425 HOH HOH . G 4 HOH A 27 426 426 HOH HOH . G 4 HOH A 28 427 427 HOH HOH . G 4 HOH A 29 428 428 HOH HOH . G 4 HOH A 30 429 429 HOH HOH . G 4 HOH A 31 430 430 HOH HOH . G 4 HOH A 32 431 431 HOH HOH . G 4 HOH A 33 432 432 HOH HOH . G 4 HOH A 34 433 433 HOH HOH . G 4 HOH A 35 434 434 HOH HOH . G 4 HOH A 36 435 435 HOH HOH . G 4 HOH A 37 436 436 HOH HOH . G 4 HOH A 38 437 437 HOH HOH . G 4 HOH A 39 438 438 HOH HOH . G 4 HOH A 40 439 439 HOH HOH . G 4 HOH A 41 440 440 HOH HOH . G 4 HOH A 42 441 441 HOH HOH . G 4 HOH A 43 442 442 HOH HOH . G 4 HOH A 44 443 443 HOH HOH . G 4 HOH A 45 444 444 HOH HOH . G 4 HOH A 46 445 445 HOH HOH . G 4 HOH A 47 446 446 HOH HOH . G 4 HOH A 48 447 447 HOH HOH . G 4 HOH A 49 448 448 HOH HOH . G 4 HOH A 50 449 449 HOH HOH . G 4 HOH A 51 450 450 HOH HOH . G 4 HOH A 52 451 451 HOH HOH . G 4 HOH A 53 452 452 HOH HOH . G 4 HOH A 54 453 453 HOH HOH . G 4 HOH A 55 454 454 HOH HOH . G 4 HOH A 56 455 455 HOH HOH . G 4 HOH A 57 456 456 HOH HOH . G 4 HOH A 58 457 457 HOH HOH . G 4 HOH A 59 458 458 HOH HOH . G 4 HOH A 60 459 459 HOH HOH . G 4 HOH A 61 460 460 HOH HOH . G 4 HOH A 62 461 461 HOH HOH . G 4 HOH A 63 462 462 HOH HOH . G 4 HOH A 64 463 463 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 39.601 _atom_site.Cartn_y 18.917 _atom_site.Cartn_z 78.628 _atom_site.occupancy 0.4 _atom_site.B_iso_or_equiv 28.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #