data_1CYJ # _model_server_result.job_id qBnCQkZ_QGLV8HNzRS0m8g _model_server_result.datetime_utc '2024-11-24 20:11:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1CYJ # _exptl.entry_id 1CYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CYJ _cell.length_a 81.6 _cell.length_b 81.6 _cell.length_c 81.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 F CAB HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 F CAC HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A OD1 ASP 2 A ASP 2 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc2 A OD2 ASP 2 A ASP 2 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 A NE2 HIS 18 A HIS 18 1_555 F FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc4 A OD1 ASP 41 A ASP 41 22_445 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 A OD2 ASP 41 A ASP 41 22_445 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 A OE2 GLU 47 A GLU 47 5_456 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc8 A OE1 GLU 54 A GLU 54 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc9 A SD MET 60 A MET 60 1_555 F FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc10 A OE2 GLU 69 A GLU 69 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc11 A OE1 GLU 69 A GLU 69 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc12 A OE2 GLU 70 A GLU 70 9_546 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc13 A OE1 GLU 71 A GLU 71 1_555 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc14 A OE2 GLU 71 A GLU 71 1_555 B CD CD . A CD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 B CD CD . A CD 300 1_555 G O HOH . A HOH 421 22_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc16 C CD CD . A CD 301 1_555 G O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc17 C CD CD . A CD 301 1_555 G O HOH . A HOH 428 5_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc18 D CD CD . A CD 302 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc19 D CD CD . A CD 302 1_555 G O HOH . A HOH 412 18_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc20 D CD CD . A CD 302 1_555 G O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc21 E CD CD . A CD 303 1_555 G O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc22 E CD CD . A CD 303 1_555 G O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CYJ _atom_sites.fract_transf_matrix[1][1] 0.012255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 300 300 CD CD . C 2 CD A 1 301 301 CD CD . D 2 CD A 1 302 302 CD CD . E 2 CD A 1 303 303 CD CD . F 3 HEC A 1 200 200 HEC HEM . G 4 HOH A 1 400 400 HOH HOH . G 4 HOH A 2 401 401 HOH HOH . G 4 HOH A 3 402 402 HOH HOH . G 4 HOH A 4 403 403 HOH HOH . G 4 HOH A 5 404 404 HOH HOH . G 4 HOH A 6 405 405 HOH HOH . G 4 HOH A 7 406 406 HOH HOH . G 4 HOH A 8 407 407 HOH HOH . G 4 HOH A 9 408 408 HOH HOH . G 4 HOH A 10 409 409 HOH HOH . G 4 HOH A 11 410 410 HOH HOH . G 4 HOH A 12 411 411 HOH HOH . G 4 HOH A 13 412 412 HOH HOH . G 4 HOH A 14 413 413 HOH HOH . G 4 HOH A 15 414 414 HOH HOH . G 4 HOH A 16 415 415 HOH HOH . G 4 HOH A 17 416 416 HOH HOH . G 4 HOH A 18 417 417 HOH HOH . G 4 HOH A 19 418 418 HOH HOH . G 4 HOH A 20 419 419 HOH HOH . G 4 HOH A 21 420 420 HOH HOH . G 4 HOH A 22 421 421 HOH HOH . G 4 HOH A 23 422 422 HOH HOH . G 4 HOH A 24 423 423 HOH HOH . G 4 HOH A 25 424 424 HOH HOH . G 4 HOH A 26 425 425 HOH HOH . G 4 HOH A 27 426 426 HOH HOH . G 4 HOH A 28 428 428 HOH HOH . G 4 HOH A 29 429 429 HOH HOH . G 4 HOH A 30 430 430 HOH HOH . G 4 HOH A 31 431 431 HOH HOH . G 4 HOH A 32 432 432 HOH HOH . G 4 HOH A 33 433 433 HOH HOH . G 4 HOH A 34 435 435 HOH HOH . G 4 HOH A 35 436 436 HOH HOH . G 4 HOH A 36 437 437 HOH HOH . G 4 HOH A 37 438 438 HOH HOH . G 4 HOH A 38 439 439 HOH HOH . G 4 HOH A 39 440 440 HOH HOH . G 4 HOH A 40 441 441 HOH HOH . G 4 HOH A 41 442 442 HOH HOH . G 4 HOH A 42 443 443 HOH HOH . G 4 HOH A 43 444 444 HOH HOH . G 4 HOH A 44 445 445 HOH HOH . G 4 HOH A 45 446 446 HOH HOH . G 4 HOH A 46 447 447 HOH HOH . G 4 HOH A 47 448 448 HOH HOH . G 4 HOH A 48 449 449 HOH HOH . G 4 HOH A 49 450 450 HOH HOH . G 4 HOH A 50 451 451 HOH HOH . G 4 HOH A 51 452 452 HOH HOH . G 4 HOH A 52 453 453 HOH HOH . G 4 HOH A 53 454 454 HOH HOH . G 4 HOH A 54 455 455 HOH HOH . G 4 HOH A 55 456 456 HOH HOH . G 4 HOH A 56 457 457 HOH HOH . G 4 HOH A 57 458 458 HOH HOH . G 4 HOH A 58 459 459 HOH HOH . G 4 HOH A 59 460 460 HOH HOH . G 4 HOH A 60 461 461 HOH HOH . G 4 HOH A 61 462 462 HOH HOH . G 4 HOH A 62 463 463 HOH HOH . G 4 HOH A 63 464 464 HOH HOH . G 4 HOH A 64 465 465 HOH HOH . G 4 HOH A 65 466 466 HOH HOH . G 4 HOH A 66 467 467 HOH HOH . G 4 HOH A 67 468 468 HOH HOH . G 4 HOH A 68 469 469 HOH HOH . G 4 HOH A 69 470 470 HOH HOH . G 4 HOH A 70 471 471 HOH HOH . G 4 HOH A 71 472 472 HOH HOH . G 4 HOH A 72 473 473 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.296 _atom_site.Cartn_y -10.127 _atom_site.Cartn_z 52.859 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #