data_1CZ7 # _model_server_result.job_id J8qIg31ulsnIXOmOLe2B2w _model_server_result.datetime_utc '2025-02-28 15:35:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 1CZ7 # _exptl.entry_id 1CZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CZ7 _cell.length_a 116.194 _cell.length_b 148.827 _cell.length_c 261.516 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CZ7 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 C,D,I,J,K,L,O,P 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 392.274 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 147 A THR 441 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 F O3B ADP . A ADP 800 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc3 F O3A ADP . A ADP 800 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc4 B OG1 THR 147 B THR 441 1_555 G MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc5 H O3B ADP . B ADP 801 1_555 G MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc6 O O HOH . C HOH 37 1_555 I MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 C OG1 THR 147 C THR 441 1_555 I MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc8 J O3A ADP . C ADP 802 1_555 I MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc9 J O3B ADP . C ADP 802 1_555 I MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc10 D OG1 THR 147 D THR 441 1_555 K MG MG . D MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc11 L O3A ADP . D ADP 803 1_555 K MG MG . D MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc12 L O3B ADP . D ADP 803 1_555 K MG MG . D MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1CZ7 _atom_sites.fract_transf_matrix[1][1] 0.008606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 804 804 MG MG . F 3 ADP A 1 800 800 ADP ADP . G 2 MG B 1 805 805 MG MG . H 3 ADP B 1 801 801 ADP ADP . I 2 MG C 1 806 806 MG MG . J 3 ADP C 1 802 802 ADP ADP . K 2 MG D 1 807 807 MG MG . L 3 ADP D 1 803 803 ADP ADP . M 4 HOH A 1 5 5 HOH WAT . M 4 HOH A 2 9 9 HOH WAT . M 4 HOH A 3 10 10 HOH WAT . M 4 HOH A 4 11 11 HOH WAT . M 4 HOH A 5 12 12 HOH WAT . M 4 HOH A 6 14 14 HOH WAT . M 4 HOH A 7 16 16 HOH WAT . M 4 HOH A 8 17 17 HOH WAT . M 4 HOH A 9 18 18 HOH WAT . M 4 HOH A 10 19 19 HOH WAT . M 4 HOH A 11 32 32 HOH WAT . M 4 HOH A 12 40 40 HOH WAT . M 4 HOH A 13 48 48 HOH WAT . M 4 HOH A 14 50 50 HOH WAT . M 4 HOH A 15 51 51 HOH WAT . M 4 HOH A 16 52 52 HOH WAT . M 4 HOH A 17 53 53 HOH WAT . M 4 HOH A 18 55 55 HOH WAT . M 4 HOH A 19 57 57 HOH WAT . M 4 HOH A 20 59 59 HOH WAT . M 4 HOH A 21 64 64 HOH WAT . M 4 HOH A 22 66 66 HOH WAT . M 4 HOH A 23 78 78 HOH WAT . M 4 HOH A 24 79 79 HOH WAT . M 4 HOH A 25 84 84 HOH WAT . M 4 HOH A 26 85 85 HOH WAT . M 4 HOH A 27 92 92 HOH WAT . M 4 HOH A 28 94 94 HOH WAT . M 4 HOH A 29 98 98 HOH WAT . M 4 HOH A 30 99 99 HOH WAT . M 4 HOH A 31 100 100 HOH WAT . M 4 HOH A 32 102 102 HOH WAT . M 4 HOH A 33 103 103 HOH WAT . M 4 HOH A 34 104 104 HOH WAT . M 4 HOH A 35 106 106 HOH WAT . M 4 HOH A 36 109 109 HOH WAT . M 4 HOH A 37 118 118 HOH WAT . M 4 HOH A 38 119 119 HOH WAT . M 4 HOH A 39 120 120 HOH WAT . M 4 HOH A 40 127 127 HOH WAT . M 4 HOH A 41 131 131 HOH WAT . M 4 HOH A 42 133 133 HOH WAT . M 4 HOH A 43 135 135 HOH WAT . M 4 HOH A 44 140 140 HOH WAT . M 4 HOH A 45 142 142 HOH WAT . M 4 HOH A 46 149 149 HOH WAT . M 4 HOH A 47 150 150 HOH WAT . M 4 HOH A 48 153 153 HOH WAT . N 4 HOH B 1 1 1 HOH WAT . N 4 HOH B 2 2 2 HOH WAT . N 4 HOH B 3 3 3 HOH WAT . N 4 HOH B 4 4 4 HOH WAT . N 4 HOH B 5 6 6 HOH WAT . N 4 HOH B 6 7 7 HOH WAT . N 4 HOH B 7 13 13 HOH WAT . N 4 HOH B 8 15 15 HOH WAT . N 4 HOH B 9 23 23 HOH WAT . N 4 HOH B 10 33 33 HOH WAT . N 4 HOH B 11 41 41 HOH WAT . N 4 HOH B 12 44 44 HOH WAT . N 4 HOH B 13 46 46 HOH WAT . N 4 HOH B 14 60 60 HOH WAT . N 4 HOH B 15 61 61 HOH WAT . N 4 HOH B 16 63 63 HOH WAT . N 4 HOH B 17 67 67 HOH WAT . N 4 HOH B 18 68 68 HOH WAT . N 4 HOH B 19 81 81 HOH WAT . N 4 HOH B 20 86 86 HOH WAT . N 4 HOH B 21 88 88 HOH WAT . N 4 HOH B 22 89 89 HOH WAT . N 4 HOH B 23 93 93 HOH WAT . N 4 HOH B 24 97 97 HOH WAT . N 4 HOH B 25 105 105 HOH WAT . N 4 HOH B 26 136 136 HOH WAT . N 4 HOH B 27 138 138 HOH WAT . N 4 HOH B 28 139 139 HOH WAT . N 4 HOH B 29 144 144 HOH WAT . N 4 HOH B 30 145 145 HOH WAT . N 4 HOH B 31 146 146 HOH WAT . N 4 HOH B 32 151 151 HOH WAT . O 4 HOH C 1 20 20 HOH WAT . O 4 HOH C 2 24 24 HOH WAT . O 4 HOH C 3 27 27 HOH WAT . O 4 HOH C 4 30 30 HOH WAT . O 4 HOH C 5 34 34 HOH WAT . O 4 HOH C 6 37 37 HOH WAT . O 4 HOH C 7 38 38 HOH WAT . O 4 HOH C 8 49 49 HOH WAT . O 4 HOH C 9 58 58 HOH WAT . O 4 HOH C 10 65 65 HOH WAT . O 4 HOH C 11 69 69 HOH WAT . O 4 HOH C 12 72 72 HOH WAT . O 4 HOH C 13 82 82 HOH WAT . O 4 HOH C 14 87 87 HOH WAT . O 4 HOH C 15 107 107 HOH WAT . O 4 HOH C 16 111 111 HOH WAT . O 4 HOH C 17 115 115 HOH WAT . O 4 HOH C 18 143 143 HOH WAT . P 4 HOH D 1 8 8 HOH WAT . P 4 HOH D 2 21 21 HOH WAT . P 4 HOH D 3 22 22 HOH WAT . P 4 HOH D 4 25 25 HOH WAT . P 4 HOH D 5 28 28 HOH WAT . P 4 HOH D 6 29 29 HOH WAT . P 4 HOH D 7 31 31 HOH WAT . P 4 HOH D 8 35 35 HOH WAT . P 4 HOH D 9 36 36 HOH WAT . P 4 HOH D 10 39 39 HOH WAT . P 4 HOH D 11 45 45 HOH WAT . P 4 HOH D 12 47 47 HOH WAT . P 4 HOH D 13 54 54 HOH WAT . P 4 HOH D 14 56 56 HOH WAT . P 4 HOH D 15 70 70 HOH WAT . P 4 HOH D 16 73 73 HOH WAT . P 4 HOH D 17 74 74 HOH WAT . P 4 HOH D 18 77 77 HOH WAT . P 4 HOH D 19 80 80 HOH WAT . P 4 HOH D 20 83 83 HOH WAT . P 4 HOH D 21 90 90 HOH WAT . P 4 HOH D 22 91 91 HOH WAT . P 4 HOH D 23 95 95 HOH WAT . P 4 HOH D 24 96 96 HOH WAT . P 4 HOH D 25 101 101 HOH WAT . P 4 HOH D 26 108 108 HOH WAT . P 4 HOH D 27 110 110 HOH WAT . P 4 HOH D 28 112 112 HOH WAT . P 4 HOH D 29 113 113 HOH WAT . P 4 HOH D 30 114 114 HOH WAT . P 4 HOH D 31 116 116 HOH WAT . P 4 HOH D 32 117 117 HOH WAT . P 4 HOH D 33 121 121 HOH WAT . P 4 HOH D 34 122 122 HOH WAT . P 4 HOH D 35 123 123 HOH WAT . P 4 HOH D 36 124 124 HOH WAT . P 4 HOH D 37 125 125 HOH WAT . P 4 HOH D 38 126 126 HOH WAT . P 4 HOH D 39 128 128 HOH WAT . P 4 HOH D 40 129 129 HOH WAT . P 4 HOH D 41 130 130 HOH WAT . P 4 HOH D 42 132 132 HOH WAT . P 4 HOH D 43 134 134 HOH WAT . P 4 HOH D 44 137 137 HOH WAT . P 4 HOH D 45 141 141 HOH WAT . P 4 HOH D 46 147 147 HOH WAT . P 4 HOH D 47 148 148 HOH WAT . P 4 HOH D 48 152 152 HOH WAT . P 4 HOH D 49 154 154 HOH WAT . P 4 HOH D 50 155 155 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 3 15.326 -18.135 106.588 1 137.45 ? PB ADP 801 B 1 HETATM 2 O O1B ADP . . . H 3 14.683 -19.311 107.23 1 144.3 ? O1B ADP 801 B 1 HETATM 3 O O2B ADP . . . H 3 16.318 -17.374 107.392 1 132.13 ? O2B ADP 801 B 1 HETATM 4 O O3B ADP . . . H 3 15.747 -18.406 105.2 1 139.86 ? O3B ADP 801 B 1 HETATM 5 P PA ADP . . . H 3 13.533 -15.537 106.641 1 141.6 ? PA ADP 801 B 1 HETATM 6 O O1A ADP . . . H 3 14.015 -15.111 107.981 1 139.36 ? O1A ADP 801 B 1 HETATM 7 O O2A ADP . . . H 3 13.795 -14.753 105.41 1 146.85 ? O2A ADP 801 B 1 HETATM 8 O O3A ADP . . . H 3 14.084 -17.126 106.352 1 136.05 ? O3A ADP 801 B 1 HETATM 9 O O5' ADP . . . H 3 11.905 -15.286 106.755 1 139.56 ? O5' ADP 801 B 1 HETATM 10 C C5' ADP . . . H 3 11.122 -14.054 106.863 1 139.05 ? C5' ADP 801 B 1 HETATM 11 C C4' ADP . . . H 3 10 -13.767 107.933 1 140.43 ? C4' ADP 801 B 1 HETATM 12 O O4' ADP . . . H 3 10.406 -12.968 109.125 1 137.15 ? O4' ADP 801 B 1 HETATM 13 C C3' ADP . . . H 3 8.862 -12.916 107.347 1 142.85 ? C3' ADP 801 B 1 HETATM 14 O O3' ADP . . . H 3 7.567 -13.448 107.651 1 143.76 ? O3' ADP 801 B 1 HETATM 15 C C2' ADP . . . H 3 9.098 -11.477 107.812 1 143.96 ? C2' ADP 801 B 1 HETATM 16 O O2' ADP . . . H 3 7.929 -10.849 108.352 1 147.02 ? O2' ADP 801 B 1 HETATM 17 C C1' ADP . . . H 3 10.238 -11.519 108.843 1 142.22 ? C1' ADP 801 B 1 HETATM 18 N N9 ADP . . . H 3 11.391 -10.544 108.574 1 144.34 ? N9 ADP 801 B 1 HETATM 19 C C8 ADP . . . H 3 12.664 -10.791 108.185 1 143.76 ? C8 ADP 801 B 1 HETATM 20 N N7 ADP . . . H 3 13.386 -9.709 107.924 1 142.38 ? N7 ADP 801 B 1 HETATM 21 C C5 ADP . . . H 3 12.534 -8.756 108.221 1 145.96 ? C5 ADP 801 B 1 HETATM 22 C C6 ADP . . . H 3 12.775 -7.388 108.106 1 148.13 ? C6 ADP 801 B 1 HETATM 23 N N6 ADP . . . H 3 13.912 -6.944 107.594 1 149.95 ? N6 ADP 801 B 1 HETATM 24 N N1 ADP . . . H 3 11.767 -6.54 108.444 1 149.57 ? N1 ADP 801 B 1 HETATM 25 C C2 ADP . . . H 3 10.569 -6.978 108.883 1 149.89 ? C2 ADP 801 B 1 HETATM 26 N N3 ADP . . . H 3 10.355 -8.306 108.975 1 149.9 ? N3 ADP 801 B 1 HETATM 27 C C4 ADP . . . H 3 11.302 -9.219 108.643 1 147.41 ? C4 ADP 801 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #