data_1CZE
#
_model_server_result.job_id            GkHmjvXt7wcvBHPZszoQAQ 
_model_server_result.datetime_utc      '2025-07-01 20:43:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cze 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":413}' 
#
_entry.id    1CZE 
#
_exptl.entry_id    1CZE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1CZE 
_cell.length_a            156.64 
_cell.length_b            85.06 
_cell.length_c            78.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CZE 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             246 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              258 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PLP 
_struct_conn.ptnr2_auth_seq_id              413 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.358 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     1CZE 
_atom_sites.fract_transf_matrix[1][1]    0.006384 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012771 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 413 413 PLP PLP . 
C 3 SIN A 1 414 414 SIN SIN . 
D 4 HOH A 1 415 1 HOH HOH . 
D 4 HOH A 2 416 2 HOH HOH . 
D 4 HOH A 3 417 3 HOH HOH . 
D 4 HOH A 4 418 4 HOH HOH . 
D 4 HOH A 5 419 5 HOH HOH . 
D 4 HOH A 6 420 6 HOH HOH . 
D 4 HOH A 7 421 7 HOH HOH . 
D 4 HOH A 8 422 8 HOH HOH . 
D 4 HOH A 9 423 9 HOH HOH . 
D 4 HOH A 10 424 10 HOH HOH . 
D 4 HOH A 11 425 11 HOH HOH . 
D 4 HOH A 12 426 12 HOH HOH . 
D 4 HOH A 13 427 13 HOH HOH . 
D 4 HOH A 14 428 14 HOH HOH . 
D 4 HOH A 15 429 15 HOH HOH . 
D 4 HOH A 16 430 16 HOH HOH . 
D 4 HOH A 17 431 17 HOH HOH . 
D 4 HOH A 18 432 18 HOH HOH . 
D 4 HOH A 19 433 19 HOH HOH . 
D 4 HOH A 20 434 20 HOH HOH . 
D 4 HOH A 21 435 21 HOH HOH . 
D 4 HOH A 22 436 22 HOH HOH . 
D 4 HOH A 23 437 23 HOH HOH . 
D 4 HOH A 24 438 24 HOH HOH . 
D 4 HOH A 25 439 25 HOH HOH . 
D 4 HOH A 26 440 26 HOH HOH . 
D 4 HOH A 27 441 27 HOH HOH . 
D 4 HOH A 28 442 28 HOH HOH . 
D 4 HOH A 29 443 29 HOH HOH . 
D 4 HOH A 30 444 30 HOH HOH . 
D 4 HOH A 31 445 31 HOH HOH . 
D 4 HOH A 32 446 32 HOH HOH . 
D 4 HOH A 33 447 33 HOH HOH . 
D 4 HOH A 34 448 34 HOH HOH . 
D 4 HOH A 35 449 35 HOH HOH . 
D 4 HOH A 36 450 36 HOH HOH . 
D 4 HOH A 37 451 37 HOH HOH . 
D 4 HOH A 38 452 38 HOH HOH . 
D 4 HOH A 39 453 39 HOH HOH . 
D 4 HOH A 40 454 40 HOH HOH . 
D 4 HOH A 41 455 41 HOH HOH . 
D 4 HOH A 42 456 42 HOH HOH . 
D 4 HOH A 43 457 43 HOH HOH . 
D 4 HOH A 44 458 44 HOH HOH . 
D 4 HOH A 45 459 45 HOH HOH . 
D 4 HOH A 46 460 46 HOH HOH . 
D 4 HOH A 47 461 47 HOH HOH . 
D 4 HOH A 48 462 48 HOH HOH . 
D 4 HOH A 49 463 49 HOH HOH . 
D 4 HOH A 50 464 50 HOH HOH . 
D 4 HOH A 51 465 51 HOH HOH . 
D 4 HOH A 52 466 52 HOH HOH . 
D 4 HOH A 53 467 53 HOH HOH . 
D 4 HOH A 54 468 54 HOH HOH . 
D 4 HOH A 55 469 55 HOH HOH . 
D 4 HOH A 56 470 56 HOH HOH . 
D 4 HOH A 57 471 57 HOH HOH . 
D 4 HOH A 58 472 58 HOH HOH . 
D 4 HOH A 59 473 59 HOH HOH . 
D 4 HOH A 60 474 60 HOH HOH . 
D 4 HOH A 61 475 61 HOH HOH . 
D 4 HOH A 62 476 62 HOH HOH . 
D 4 HOH A 63 477 63 HOH HOH . 
D 4 HOH A 64 478 64 HOH HOH . 
D 4 HOH A 65 479 65 HOH HOH . 
D 4 HOH A 66 480 66 HOH HOH . 
D 4 HOH A 67 481 67 HOH HOH . 
D 4 HOH A 68 482 68 HOH HOH . 
D 4 HOH A 69 483 69 HOH HOH . 
D 4 HOH A 70 484 70 HOH HOH . 
D 4 HOH A 71 485 71 HOH HOH . 
D 4 HOH A 72 486 72 HOH HOH . 
D 4 HOH A 73 487 73 HOH HOH . 
D 4 HOH A 74 488 74 HOH HOH . 
D 4 HOH A 75 489 75 HOH HOH . 
D 4 HOH A 76 490 76 HOH HOH . 
D 4 HOH A 77 491 77 HOH HOH . 
D 4 HOH A 78 492 78 HOH HOH . 
D 4 HOH A 79 493 79 HOH HOH . 
D 4 HOH A 80 494 80 HOH HOH . 
D 4 HOH A 81 495 81 HOH HOH . 
D 4 HOH A 82 496 82 HOH HOH . 
D 4 HOH A 83 497 83 HOH HOH . 
D 4 HOH A 84 498 84 HOH HOH . 
D 4 HOH A 85 499 85 HOH HOH . 
D 4 HOH A 86 500 86 HOH HOH . 
D 4 HOH A 87 501 87 HOH HOH . 
D 4 HOH A 88 502 88 HOH HOH . 
D 4 HOH A 89 503 89 HOH HOH . 
D 4 HOH A 90 504 90 HOH HOH . 
D 4 HOH A 91 505 91 HOH HOH . 
D 4 HOH A 92 506 92 HOH HOH . 
D 4 HOH A 93 507 93 HOH HOH . 
D 4 HOH A 94 508 94 HOH HOH . 
D 4 HOH A 95 509 95 HOH HOH . 
D 4 HOH A 96 510 96 HOH HOH . 
D 4 HOH A 97 511 97 HOH HOH . 
D 4 HOH A 98 512 98 HOH HOH . 
D 4 HOH A 99 513 99 HOH HOH . 
D 4 HOH A 100 514 100 HOH HOH . 
D 4 HOH A 101 515 101 HOH HOH . 
D 4 HOH A 102 516 102 HOH HOH . 
D 4 HOH A 103 517 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . B 2 26.765 4.462 -14.624 1 10.78 ? N1 PLP 413 A 1 
HETATM 2 C C2 PLP . . . B 2 26.223 5.278 -15.542 1 10.58 ? C2 PLP 413 A 1 
HETATM 3 C C2A PLP . . . B 2 26.852 5.377 -16.878 1 10.63 ? C2A PLP 413 A 1 
HETATM 4 C C3 PLP . . . B 2 25.117 6.005 -15.238 1 10.44 ? C3 PLP 413 A 1 
HETATM 5 O O3 PLP . . . B 2 24.603 6.825 -16.162 1 10.86 ? O3 PLP 413 A 1 
HETATM 6 C C4 PLP . . . B 2 24.545 5.896 -13.975 1 10.5 ? C4 PLP 413 A 1 
HETATM 7 C C4A PLP . . . B 2 23.381 6.554 -13.639 1 10.06 ? C4A PLP 413 A 1 
HETATM 8 C C5 PLP . . . B 2 25.125 5.065 -13.048 1 10.77 ? C5 PLP 413 A 1 
HETATM 9 C C6 PLP . . . B 2 26.219 4.342 -13.375 1 11.15 ? C6 PLP 413 A 1 
HETATM 10 C C5A PLP . . . B 2 24.601 5.002 -11.646 1 10.96 ? C5A PLP 413 A 1 
HETATM 11 O O4P PLP . . . B 2 23.731 3.965 -11.348 1 10.51 ? O4P PLP 413 A 1 
HETATM 12 P P PLP . . . B 2 22.943 4.217 -10.024 1 10 ? P PLP 413 A 1 
HETATM 13 O O1P PLP . . . B 2 21.814 3.248 -10.032 1 9.31 ? O1P PLP 413 A 1 
HETATM 14 O O2P PLP . . . B 2 22.382 5.689 -10.091 1 10.05 ? O2P PLP 413 A 1 
HETATM 15 O O3P PLP . . . B 2 23.93 4.14 -8.935 1 10 ? O3P PLP 413 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#