data_1CZJ # _model_server_result.job_id x9npYJ9eDmDxhxFQs04uhQ _model_server_result.datetime_utc '2025-03-28 07:36:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1czj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":119}' # _entry.id 1CZJ # _exptl.entry_id 1CZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CZJ _cell.length_a 73.71 _cell.length_b 73.71 _cell.length_c 57.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 38 A CYS 38 1_555 C CAB HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale2 A SG CYS 41 A CYS 41 1_555 C CAC HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? covale ? covale3 A SG CYS 54 A CYS 54 1_555 D CAB HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale4 A SG CYS 59 A CYS 59 1_555 D CAC HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale5 A SG CYS 86 A CYS 86 1_555 E CAB HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale6 A SG CYS 89 A CYS 89 1_555 E CAC HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale7 A SG CYS 105 A CYS 105 1_555 F CAB HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale8 A SG CYS 108 A CYS 108 1_555 F CAC HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc1 A NE2 HIS 30 A HIS 30 1_555 C FE HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc2 A NE2 HIS 33 A HIS 33 1_555 E FE HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 A NE2 HIS 42 A HIS 42 1_555 C FE HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 A NE2 HIS 43 A HIS 43 1_555 D FE HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 A NE2 HIS 60 A HIS 60 1_555 D FE HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 A NE2 HIS 77 A HIS 77 1_555 F FE HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc7 A NE2 HIS 90 A HIS 90 1_555 E FE HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc8 A NE2 HIS 109 A HIS 109 1_555 F FE HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CZJ _atom_sites.fract_transf_matrix[1][1] 0.013567 _atom_sites.fract_transf_matrix[1][2] 0.007833 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 200 200 SO4 SO4 . C 3 HEM A 1 119 119 HEM HEM . D 3 HEM A 1 120 120 HEM HEM . E 3 HEM A 1 121 121 HEM HEM . F 3 HEM A 1 122 122 HEM HEM . G 4 HOH A 1 201 201 HOH HOH . G 4 HOH A 2 202 202 HOH HOH . G 4 HOH A 3 203 203 HOH HOH . G 4 HOH A 4 204 204 HOH HOH . G 4 HOH A 5 205 205 HOH HOH . G 4 HOH A 6 206 206 HOH HOH . G 4 HOH A 7 207 207 HOH HOH . G 4 HOH A 8 208 208 HOH HOH . G 4 HOH A 9 209 209 HOH HOH . G 4 HOH A 10 210 210 HOH HOH . G 4 HOH A 11 211 211 HOH HOH . G 4 HOH A 12 212 212 HOH HOH . G 4 HOH A 13 213 213 HOH HOH . G 4 HOH A 14 214 214 HOH HOH . G 4 HOH A 15 215 215 HOH HOH . G 4 HOH A 16 216 216 HOH HOH . G 4 HOH A 17 217 217 HOH HOH . G 4 HOH A 18 218 218 HOH HOH . G 4 HOH A 19 219 219 HOH HOH . G 4 HOH A 20 220 220 HOH HOH . G 4 HOH A 21 221 221 HOH HOH . G 4 HOH A 22 222 222 HOH HOH . G 4 HOH A 23 223 223 HOH HOH . G 4 HOH A 24 224 224 HOH HOH . G 4 HOH A 25 225 225 HOH HOH . G 4 HOH A 26 226 226 HOH HOH . G 4 HOH A 27 227 227 HOH HOH . G 4 HOH A 28 228 228 HOH HOH . G 4 HOH A 29 229 229 HOH HOH . G 4 HOH A 30 230 230 HOH HOH . G 4 HOH A 31 231 231 HOH HOH . G 4 HOH A 32 232 232 HOH HOH . G 4 HOH A 33 233 233 HOH HOH . G 4 HOH A 34 234 234 HOH HOH . G 4 HOH A 35 235 235 HOH HOH . G 4 HOH A 36 236 236 HOH HOH . G 4 HOH A 37 237 237 HOH HOH . G 4 HOH A 38 238 238 HOH HOH . G 4 HOH A 39 239 239 HOH HOH . G 4 HOH A 40 240 240 HOH HOH . G 4 HOH A 41 241 241 HOH HOH . G 4 HOH A 42 242 242 HOH HOH . G 4 HOH A 43 243 243 HOH HOH . G 4 HOH A 44 244 244 HOH HOH . G 4 HOH A 45 245 245 HOH HOH . G 4 HOH A 46 246 246 HOH HOH . G 4 HOH A 47 247 247 HOH HOH . G 4 HOH A 48 248 248 HOH HOH . G 4 HOH A 49 249 249 HOH HOH . G 4 HOH A 50 250 250 HOH HOH . G 4 HOH A 51 251 251 HOH HOH . G 4 HOH A 52 252 252 HOH HOH . G 4 HOH A 53 253 253 HOH HOH . G 4 HOH A 54 254 254 HOH HOH . G 4 HOH A 55 255 255 HOH HOH . G 4 HOH A 56 256 256 HOH HOH . G 4 HOH A 57 257 257 HOH HOH . G 4 HOH A 58 258 258 HOH HOH . G 4 HOH A 59 259 259 HOH HOH . G 4 HOH A 60 260 260 HOH HOH . G 4 HOH A 61 261 261 HOH HOH . G 4 HOH A 62 262 262 HOH HOH . G 4 HOH A 63 263 263 HOH HOH . G 4 HOH A 64 264 264 HOH HOH . G 4 HOH A 65 265 265 HOH HOH . G 4 HOH A 66 266 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 8.37 28.053 6.614 1 12.69 ? CHA HEM 119 A 1 HETATM 2 C CHB HEM . . . C 3 11.239 27.32 2.772 1 11.02 ? CHB HEM 119 A 1 HETATM 3 C CHC HEM . . . C 3 12.443 31.987 2.795 1 11.54 ? CHC HEM 119 A 1 HETATM 4 C CHD HEM . . . C 3 10.454 32.304 7.187 1 7.94 ? CHD HEM 119 A 1 HETATM 5 C C1A HEM . . . C 3 8.992 27.462 5.539 1 14.42 ? C1A HEM 119 A 1 HETATM 6 C C2A HEM . . . C 3 8.834 26.061 5.147 1 14.42 ? C2A HEM 119 A 1 HETATM 7 C C3A HEM . . . C 3 9.677 25.902 4.091 1 9.9 ? C3A HEM 119 A 1 HETATM 8 C C4A HEM . . . C 3 10.33 27.132 3.82 1 10.23 ? C4A HEM 119 A 1 HETATM 9 C CMA HEM . . . C 3 9.91 24.627 3.311 1 7.59 ? CMA HEM 119 A 1 HETATM 10 C CAA HEM . . . C 3 8.054 24.937 5.846 1 17.88 ? CAA HEM 119 A 1 HETATM 11 C CBA HEM . . . C 3 9.033 24.224 6.777 1 27.29 ? CBA HEM 119 A 1 HETATM 12 C CGA HEM . . . C 3 8.443 22.997 7.446 1 32.08 ? CGA HEM 119 A 1 HETATM 13 O O1A HEM . . . C 3 7.845 23.149 8.528 1 30.67 ? O1A HEM 119 A 1 HETATM 14 O O2A HEM . . . C 3 8.608 21.874 6.905 1 40.81 ? O2A HEM 119 A 1 HETATM 15 C C1B HEM . . . C 3 11.834 28.528 2.425 1 12.17 ? C1B HEM 119 A 1 HETATM 16 C C2B HEM . . . C 3 12.637 28.762 1.242 1 11.85 ? C2B HEM 119 A 1 HETATM 17 C C3B HEM . . . C 3 12.877 30.093 1.191 1 13.77 ? C3B HEM 119 A 1 HETATM 18 C C4B HEM . . . C 3 12.272 30.67 2.377 1 11.84 ? C4B HEM 119 A 1 HETATM 19 C CMB HEM . . . C 3 13.153 27.734 0.252 1 13.18 ? CMB HEM 119 A 1 HETATM 20 C CAB HEM . . . C 3 13.608 30.921 0.126 1 13.06 ? CAB HEM 119 A 1 HETATM 21 C CBB HEM . . . C 3 12.906 31.056 -1.227 1 11.45 ? CBB HEM 119 A 1 HETATM 22 C C1C HEM . . . C 3 11.956 32.506 3.996 1 9.05 ? C1C HEM 119 A 1 HETATM 23 C C2C HEM . . . C 3 12.331 33.783 4.521 1 5.29 ? C2C HEM 119 A 1 HETATM 24 C C3C HEM . . . C 3 11.829 33.863 5.773 1 9.13 ? C3C HEM 119 A 1 HETATM 25 C C4C HEM . . . C 3 11.116 32.623 6.007 1 9.23 ? C4C HEM 119 A 1 HETATM 26 C CMC HEM . . . C 3 13.195 34.84 3.852 1 7.16 ? CMC HEM 119 A 1 HETATM 27 C CAC HEM . . . C 3 12.005 35.011 6.773 1 11.46 ? CAC HEM 119 A 1 HETATM 28 C CBC HEM . . . C 3 11.331 36.347 6.451 1 6.59 ? CBC HEM 119 A 1 HETATM 29 C C1D HEM . . . C 3 9.694 31.168 7.398 1 9.96 ? C1D HEM 119 A 1 HETATM 30 C C2D HEM . . . C 3 8.805 30.999 8.517 1 13.27 ? C2D HEM 119 A 1 HETATM 31 C C3D HEM . . . C 3 8.161 29.824 8.308 1 15.15 ? C3D HEM 119 A 1 HETATM 32 C C4D HEM . . . C 3 8.644 29.288 7.063 1 10.49 ? C4D HEM 119 A 1 HETATM 33 C CMD HEM . . . C 3 8.638 31.915 9.72 1 13.15 ? CMD HEM 119 A 1 HETATM 34 C CAD HEM . . . C 3 7.224 29.182 9.308 1 16.5 ? CAD HEM 119 A 1 HETATM 35 C CBD HEM . . . C 3 8.061 28.352 10.279 1 22.5 ? CBD HEM 119 A 1 HETATM 36 C CGD HEM . . . C 3 7.231 27.648 11.342 1 21.92 ? CGD HEM 119 A 1 HETATM 37 O O1D HEM . . . C 3 7.73 27.534 12.481 1 23.19 ? O1D HEM 119 A 1 HETATM 38 O O2D HEM . . . C 3 6.094 27.206 11.052 1 24.45 ? O2D HEM 119 A 1 HETATM 39 N NA HEM . . . C 3 9.923 28.104 4.727 1 10.87 ? NA HEM 119 A 1 HETATM 40 N NB HEM . . . C 3 11.612 29.704 3.127 1 12.23 ? NB HEM 119 A 1 HETATM 41 N NC HEM . . . C 3 11.215 31.776 4.916 1 7.95 ? NC HEM 119 A 1 HETATM 42 N ND HEM . . . C 3 9.574 30.118 6.496 1 9.74 ? ND HEM 119 A 1 HETATM 43 FE FE HEM . . . C 3 10.546 29.938 4.804 1 10.8 ? FE HEM 119 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #