data_1CZJ # _model_server_result.job_id Ey-gY68gHfMMT1qtzeA8vg _model_server_result.datetime_utc '2025-03-28 11:30:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1czj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":120}' # _entry.id 1CZJ # _exptl.entry_id 1CZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CZJ _cell.length_a 73.71 _cell.length_b 73.71 _cell.length_c 57.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 38 A CYS 38 1_555 C CAB HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale2 A SG CYS 41 A CYS 41 1_555 C CAC HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? covale ? covale3 A SG CYS 54 A CYS 54 1_555 D CAB HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale4 A SG CYS 59 A CYS 59 1_555 D CAC HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale5 A SG CYS 86 A CYS 86 1_555 E CAB HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale6 A SG CYS 89 A CYS 89 1_555 E CAC HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale7 A SG CYS 105 A CYS 105 1_555 F CAB HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale8 A SG CYS 108 A CYS 108 1_555 F CAC HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc1 A NE2 HIS 30 A HIS 30 1_555 C FE HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc2 A NE2 HIS 33 A HIS 33 1_555 E FE HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 A NE2 HIS 42 A HIS 42 1_555 C FE HEM . A HEM 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 A NE2 HIS 43 A HIS 43 1_555 D FE HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 A NE2 HIS 60 A HIS 60 1_555 D FE HEM . A HEM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 A NE2 HIS 77 A HIS 77 1_555 F FE HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc7 A NE2 HIS 90 A HIS 90 1_555 E FE HEM . A HEM 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc8 A NE2 HIS 109 A HIS 109 1_555 F FE HEM . A HEM 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CZJ _atom_sites.fract_transf_matrix[1][1] 0.013567 _atom_sites.fract_transf_matrix[1][2] 0.007833 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 200 200 SO4 SO4 . C 3 HEM A 1 119 119 HEM HEM . D 3 HEM A 1 120 120 HEM HEM . E 3 HEM A 1 121 121 HEM HEM . F 3 HEM A 1 122 122 HEM HEM . G 4 HOH A 1 201 201 HOH HOH . G 4 HOH A 2 202 202 HOH HOH . G 4 HOH A 3 203 203 HOH HOH . G 4 HOH A 4 204 204 HOH HOH . G 4 HOH A 5 205 205 HOH HOH . G 4 HOH A 6 206 206 HOH HOH . G 4 HOH A 7 207 207 HOH HOH . G 4 HOH A 8 208 208 HOH HOH . G 4 HOH A 9 209 209 HOH HOH . G 4 HOH A 10 210 210 HOH HOH . G 4 HOH A 11 211 211 HOH HOH . G 4 HOH A 12 212 212 HOH HOH . G 4 HOH A 13 213 213 HOH HOH . G 4 HOH A 14 214 214 HOH HOH . G 4 HOH A 15 215 215 HOH HOH . G 4 HOH A 16 216 216 HOH HOH . G 4 HOH A 17 217 217 HOH HOH . G 4 HOH A 18 218 218 HOH HOH . G 4 HOH A 19 219 219 HOH HOH . G 4 HOH A 20 220 220 HOH HOH . G 4 HOH A 21 221 221 HOH HOH . G 4 HOH A 22 222 222 HOH HOH . G 4 HOH A 23 223 223 HOH HOH . G 4 HOH A 24 224 224 HOH HOH . G 4 HOH A 25 225 225 HOH HOH . G 4 HOH A 26 226 226 HOH HOH . G 4 HOH A 27 227 227 HOH HOH . G 4 HOH A 28 228 228 HOH HOH . G 4 HOH A 29 229 229 HOH HOH . G 4 HOH A 30 230 230 HOH HOH . G 4 HOH A 31 231 231 HOH HOH . G 4 HOH A 32 232 232 HOH HOH . G 4 HOH A 33 233 233 HOH HOH . G 4 HOH A 34 234 234 HOH HOH . G 4 HOH A 35 235 235 HOH HOH . G 4 HOH A 36 236 236 HOH HOH . G 4 HOH A 37 237 237 HOH HOH . G 4 HOH A 38 238 238 HOH HOH . G 4 HOH A 39 239 239 HOH HOH . G 4 HOH A 40 240 240 HOH HOH . G 4 HOH A 41 241 241 HOH HOH . G 4 HOH A 42 242 242 HOH HOH . G 4 HOH A 43 243 243 HOH HOH . G 4 HOH A 44 244 244 HOH HOH . G 4 HOH A 45 245 245 HOH HOH . G 4 HOH A 46 246 246 HOH HOH . G 4 HOH A 47 247 247 HOH HOH . G 4 HOH A 48 248 248 HOH HOH . G 4 HOH A 49 249 249 HOH HOH . G 4 HOH A 50 250 250 HOH HOH . G 4 HOH A 51 251 251 HOH HOH . G 4 HOH A 52 252 252 HOH HOH . G 4 HOH A 53 253 253 HOH HOH . G 4 HOH A 54 254 254 HOH HOH . G 4 HOH A 55 255 255 HOH HOH . G 4 HOH A 56 256 256 HOH HOH . G 4 HOH A 57 257 257 HOH HOH . G 4 HOH A 58 258 258 HOH HOH . G 4 HOH A 59 259 259 HOH HOH . G 4 HOH A 60 260 260 HOH HOH . G 4 HOH A 61 261 261 HOH HOH . G 4 HOH A 62 262 262 HOH HOH . G 4 HOH A 63 263 263 HOH HOH . G 4 HOH A 64 264 264 HOH HOH . G 4 HOH A 65 265 265 HOH HOH . G 4 HOH A 66 266 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 19.289 32.076 17.158 1 18.73 ? CHA HEM 120 A 1 HETATM 2 C CHB HEM . . . D 3 15.265 33.257 14.814 1 14.75 ? CHB HEM 120 A 1 HETATM 3 C CHC HEM . . . D 3 14.951 28.629 13.4 1 16.21 ? CHC HEM 120 A 1 HETATM 4 C CHD HEM . . . D 3 18.334 27.416 16.564 1 17.39 ? CHD HEM 120 A 1 HETATM 5 C C1A HEM . . . D 3 18.219 32.772 16.655 1 19.18 ? C1A HEM 120 A 1 HETATM 6 C C2A HEM . . . D 3 17.923 34.153 16.968 1 21.8 ? C2A HEM 120 A 1 HETATM 7 C C3A HEM . . . D 3 16.787 34.498 16.332 1 16.55 ? C3A HEM 120 A 1 HETATM 8 C C4A HEM . . . D 3 16.355 33.302 15.648 1 16.79 ? C4A HEM 120 A 1 HETATM 9 C CMA HEM . . . D 3 16.109 35.873 16.414 1 14.95 ? CMA HEM 120 A 1 HETATM 10 C CAA HEM . . . D 3 18.642 35.081 17.945 1 27.39 ? CAA HEM 120 A 1 HETATM 11 C CBA HEM . . . D 3 20.03 35.549 17.54 1 36.17 ? CBA HEM 120 A 1 HETATM 12 C CGA HEM . . . D 3 20.574 36.638 18.453 1 42.69 ? CGA HEM 120 A 1 HETATM 13 O O1A HEM . . . D 3 20.215 36.646 19.655 1 44.77 ? O1A HEM 120 A 1 HETATM 14 O O2A HEM . . . D 3 21.358 37.487 17.962 1 44.09 ? O2A HEM 120 A 1 HETATM 15 C C1B HEM . . . D 3 14.817 32.101 14.225 1 16.1 ? C1B HEM 120 A 1 HETATM 16 C C2B HEM . . . D 3 13.667 32.027 13.357 1 16.15 ? C2B HEM 120 A 1 HETATM 17 C C3B HEM . . . D 3 13.603 30.752 12.915 1 16.1 ? C3B HEM 120 A 1 HETATM 18 C C4B HEM . . . D 3 14.692 30.01 13.563 1 18.04 ? C4B HEM 120 A 1 HETATM 19 C CMB HEM . . . D 3 12.714 33.165 13.015 1 21.04 ? CMB HEM 120 A 1 HETATM 20 C CAB HEM . . . D 3 12.647 30.129 11.91 1 14.13 ? CAB HEM 120 A 1 HETATM 21 C CBB HEM . . . D 3 12.726 30.753 10.514 1 15.76 ? CBB HEM 120 A 1 HETATM 22 C C1C HEM . . . D 3 15.863 27.864 14.101 1 15.77 ? C1C HEM 120 A 1 HETATM 23 C C2C HEM . . . D 3 15.849 26.39 14.147 1 13 ? C2C HEM 120 A 1 HETATM 24 C C3C HEM . . . D 3 16.709 26.039 15.166 1 17.47 ? C3C HEM 120 A 1 HETATM 25 C C4C HEM . . . D 3 17.311 27.309 15.641 1 18.46 ? C4C HEM 120 A 1 HETATM 26 C CMC HEM . . . D 3 14.981 25.456 13.302 1 5.41 ? CMC HEM 120 A 1 HETATM 27 C CAC HEM . . . D 3 16.968 24.618 15.723 1 16.48 ? CAC HEM 120 A 1 HETATM 28 C CBC HEM . . . D 3 17.767 23.704 14.791 1 15.78 ? CBC HEM 120 A 1 HETATM 29 C C1D HEM . . . D 3 18.903 28.592 17.017 1 18.32 ? C1D HEM 120 A 1 HETATM 30 C C2D HEM . . . D 3 20.051 28.689 17.888 1 18.17 ? C2D HEM 120 A 1 HETATM 31 C C3D HEM . . . D 3 20.372 29.99 18.012 1 19.42 ? C3D HEM 120 A 1 HETATM 32 C C4D HEM . . . D 3 19.397 30.706 17.224 1 18.59 ? C4D HEM 120 A 1 HETATM 33 C CMD HEM . . . D 3 20.773 27.512 18.499 1 23.98 ? CMD HEM 120 A 1 HETATM 34 C CAD HEM . . . D 3 21.544 30.654 18.726 1 22.96 ? CAD HEM 120 A 1 HETATM 35 C CBD HEM . . . D 3 22.919 30.2 18.258 1 34.73 ? CBD HEM 120 A 1 HETATM 36 C CGD HEM . . . D 3 23.103 30.293 16.747 1 42.4 ? CGD HEM 120 A 1 HETATM 37 O O1D HEM . . . D 3 22.965 31.408 16.192 1 44.99 ? O1D HEM 120 A 1 HETATM 38 O O2D HEM . . . D 3 23.389 29.245 16.112 1 45.37 ? O2D HEM 120 A 1 HETATM 39 N NA HEM . . . D 3 17.214 32.222 15.909 1 17.43 ? NA HEM 120 A 1 HETATM 40 N NB HEM . . . D 3 15.43 30.846 14.372 1 19.04 ? NB HEM 120 A 1 HETATM 41 N NC HEM . . . D 3 16.742 28.417 15.023 1 15.17 ? NC HEM 120 A 1 HETATM 42 N ND HEM . . . D 3 18.501 29.847 16.618 1 21 ? ND HEM 120 A 1 HETATM 43 FE FE HEM . . . D 3 17.014 30.335 15.43 1 19.15 ? FE HEM 120 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #