data_1D03 # _model_server_result.job_id 9mGpLg9eFoJlfqxLytLFzw _model_server_result.datetime_utc '2024-10-14 08:22:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":170}' # _entry.id 1D03 # _exptl.entry_id 1D03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D03 _cell.length_a 51.3 _cell.length_b 59.15 _cell.length_c 94.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1D03 _atom_sites.fract_transf_matrix[1][1] 0.019493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 170 170 FMN FMN . C 3 HOH A 1 171 171 HOH WAT . C 3 HOH A 2 172 172 HOH WAT . C 3 HOH A 3 173 173 HOH WAT . C 3 HOH A 4 174 174 HOH WAT . C 3 HOH A 5 175 175 HOH WAT . C 3 HOH A 6 176 176 HOH WAT . C 3 HOH A 7 178 178 HOH WAT . C 3 HOH A 8 179 179 HOH WAT . C 3 HOH A 9 180 180 HOH WAT . C 3 HOH A 10 181 181 HOH WAT . C 3 HOH A 11 182 182 HOH WAT . C 3 HOH A 12 183 183 HOH WAT . C 3 HOH A 13 184 184 HOH WAT . C 3 HOH A 14 186 186 HOH WAT . C 3 HOH A 15 187 187 HOH WAT . C 3 HOH A 16 188 188 HOH WAT . C 3 HOH A 17 189 189 HOH WAT . C 3 HOH A 18 190 190 HOH WAT . C 3 HOH A 19 191 191 HOH WAT . C 3 HOH A 20 192 192 HOH WAT . C 3 HOH A 21 193 193 HOH WAT . C 3 HOH A 22 194 194 HOH WAT . C 3 HOH A 23 195 195 HOH WAT . C 3 HOH A 24 197 197 HOH WAT . C 3 HOH A 25 198 198 HOH WAT . C 3 HOH A 26 199 199 HOH WAT . C 3 HOH A 27 200 200 HOH WAT . C 3 HOH A 28 201 201 HOH WAT . C 3 HOH A 29 202 202 HOH WAT . C 3 HOH A 30 203 203 HOH WAT . C 3 HOH A 31 204 204 HOH WAT . C 3 HOH A 32 205 205 HOH WAT . C 3 HOH A 33 207 207 HOH WAT . C 3 HOH A 34 208 208 HOH WAT . C 3 HOH A 35 209 209 HOH WAT . C 3 HOH A 36 210 210 HOH WAT . C 3 HOH A 37 212 212 HOH WAT . C 3 HOH A 38 213 213 HOH WAT . C 3 HOH A 39 214 214 HOH WAT . C 3 HOH A 40 215 215 HOH WAT . C 3 HOH A 41 216 216 HOH WAT . C 3 HOH A 42 220 220 HOH WAT . C 3 HOH A 43 221 221 HOH WAT . C 3 HOH A 44 222 222 HOH WAT . C 3 HOH A 45 225 225 HOH WAT . C 3 HOH A 46 227 227 HOH WAT . C 3 HOH A 47 228 228 HOH WAT . C 3 HOH A 48 229 229 HOH WAT . C 3 HOH A 49 230 230 HOH WAT . C 3 HOH A 50 231 231 HOH WAT . C 3 HOH A 51 232 232 HOH WAT . C 3 HOH A 52 233 233 HOH WAT . C 3 HOH A 53 241 241 HOH WAT . C 3 HOH A 54 258 258 HOH WAT . C 3 HOH A 55 267 267 HOH WAT . C 3 HOH A 56 313 313 HOH WAT . C 3 HOH A 57 348 348 HOH WAT . C 3 HOH A 58 352 352 HOH WAT . C 3 HOH A 59 353 353 HOH WAT . C 3 HOH A 60 400 400 HOH WAT . C 3 HOH A 61 401 401 HOH WAT . C 3 HOH A 62 402 402 HOH WAT . C 3 HOH A 63 403 403 HOH WAT . C 3 HOH A 64 404 404 HOH WAT . C 3 HOH A 65 405 405 HOH WAT . C 3 HOH A 66 406 406 HOH WAT . C 3 HOH A 67 407 407 HOH WAT . C 3 HOH A 68 408 408 HOH WAT . C 3 HOH A 69 409 409 HOH WAT . C 3 HOH A 70 410 410 HOH WAT . C 3 HOH A 71 412 412 HOH WAT . C 3 HOH A 72 414 414 HOH WAT . C 3 HOH A 73 415 415 HOH WAT . C 3 HOH A 74 416 416 HOH WAT . C 3 HOH A 75 417 417 HOH WAT . C 3 HOH A 76 418 418 HOH WAT . C 3 HOH A 77 420 420 HOH WAT . C 3 HOH A 78 421 421 HOH WAT . C 3 HOH A 79 423 423 HOH WAT . C 3 HOH A 80 425 425 HOH WAT . C 3 HOH A 81 428 428 HOH WAT . C 3 HOH A 82 431 431 HOH WAT . C 3 HOH A 83 433 433 HOH WAT . C 3 HOH A 84 437 437 HOH WAT . C 3 HOH A 85 438 438 HOH WAT . C 3 HOH A 86 439 439 HOH WAT . C 3 HOH A 87 440 440 HOH WAT . C 3 HOH A 88 443 443 HOH WAT . C 3 HOH A 89 444 444 HOH WAT . C 3 HOH A 90 450 450 HOH WAT . C 3 HOH A 91 500 500 HOH WAT . C 3 HOH A 92 501 501 HOH WAT . C 3 HOH A 93 502 502 HOH WAT . C 3 HOH A 94 503 503 HOH WAT . C 3 HOH A 95 506 506 HOH WAT . C 3 HOH A 96 507 507 HOH WAT . C 3 HOH A 97 508 508 HOH WAT . C 3 HOH A 98 509 509 HOH WAT . C 3 HOH A 99 510 510 HOH WAT . C 3 HOH A 100 514 514 HOH WAT . C 3 HOH A 101 516 516 HOH WAT . C 3 HOH A 102 517 517 HOH WAT . C 3 HOH A 103 519 519 HOH WAT . C 3 HOH A 104 520 520 HOH WAT . C 3 HOH A 105 525 525 HOH WAT . C 3 HOH A 106 526 526 HOH WAT . C 3 HOH A 107 528 528 HOH WAT . C 3 HOH A 108 530 530 HOH WAT . C 3 HOH A 109 532 532 HOH WAT . C 3 HOH A 110 541 541 HOH WAT . C 3 HOH A 111 542 542 HOH WAT . C 3 HOH A 112 543 543 HOH WAT . C 3 HOH A 113 544 544 HOH WAT . C 3 HOH A 114 545 545 HOH WAT . C 3 HOH A 115 546 546 HOH WAT . C 3 HOH A 116 547 547 HOH WAT . C 3 HOH A 117 548 548 HOH WAT . C 3 HOH A 118 549 549 HOH WAT . C 3 HOH A 119 551 551 HOH WAT . C 3 HOH A 120 553 553 HOH WAT . C 3 HOH A 121 554 554 HOH WAT . C 3 HOH A 122 555 555 HOH WAT . C 3 HOH A 123 556 556 HOH WAT . C 3 HOH A 124 557 557 HOH WAT . C 3 HOH A 125 561 561 HOH WAT . C 3 HOH A 126 564 564 HOH WAT . C 3 HOH A 127 566 566 HOH WAT . C 3 HOH A 128 568 568 HOH WAT . C 3 HOH A 129 569 569 HOH WAT . C 3 HOH A 130 570 570 HOH WAT . C 3 HOH A 131 574 574 HOH WAT . C 3 HOH A 132 577 577 HOH WAT . C 3 HOH A 133 581 581 HOH WAT . C 3 HOH A 134 587 587 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 61.86 34.337 -17.316 1 13.45 ? N1 FMN 170 A 1 HETATM 2 C C2 FMN . . . B 2 62.456 35.539 -17.652 1 14.42 ? C2 FMN 170 A 1 HETATM 3 O O2 FMN . . . B 2 62.715 36.381 -16.808 1 13.73 ? O2 FMN 170 A 1 HETATM 4 N N3 FMN . . . B 2 62.781 35.807 -19.003 1 14.22 ? N3 FMN 170 A 1 HETATM 5 C C4 FMN . . . B 2 62.502 34.965 -20.049 1 15.91 ? C4 FMN 170 A 1 HETATM 6 O O4 FMN . . . B 2 62.784 35.254 -21.205 1 16.23 ? O4 FMN 170 A 1 HETATM 7 C C4A FMN . . . B 2 61.84 33.667 -19.698 1 15.8 ? C4A FMN 170 A 1 HETATM 8 N N5 FMN . . . B 2 61.601 32.773 -20.645 1 15.01 ? N5 FMN 170 A 1 HETATM 9 C C5A FMN . . . B 2 61.01 31.578 -20.285 1 16.13 ? C5A FMN 170 A 1 HETATM 10 C C6 FMN . . . B 2 60.866 30.571 -21.281 1 17.21 ? C6 FMN 170 A 1 HETATM 11 C C7 FMN . . . B 2 60.483 29.276 -20.954 1 16.54 ? C7 FMN 170 A 1 HETATM 12 C C7M FMN . . . B 2 60.327 28.253 -22.051 1 17.76 ? C7M FMN 170 A 1 HETATM 13 C C8 FMN . . . B 2 60.253 28.935 -19.567 1 16.18 ? C8 FMN 170 A 1 HETATM 14 C C8M FMN . . . B 2 59.978 27.509 -19.147 1 13.63 ? C8M FMN 170 A 1 HETATM 15 C C9 FMN . . . B 2 60.304 29.929 -18.595 1 14.54 ? C9 FMN 170 A 1 HETATM 16 C C9A FMN . . . B 2 60.707 31.252 -18.92 1 14.64 ? C9A FMN 170 A 1 HETATM 17 N N10 FMN . . . B 2 60.942 32.253 -17.951 1 13.81 ? N10 FMN 170 A 1 HETATM 18 C C10 FMN . . . B 2 61.553 33.459 -18.266 1 15.37 ? C10 FMN 170 A 1 HETATM 19 C C1' FMN . . . B 2 60.558 32.002 -16.561 1 12.33 ? C1' FMN 170 A 1 HETATM 20 C C2' FMN . . . B 2 59.063 32.232 -16.37 1 11.37 ? C2' FMN 170 A 1 HETATM 21 O O2' FMN . . . B 2 58.68 33.591 -16.594 1 10.15 ? O2' FMN 170 A 1 HETATM 22 C C3' FMN . . . B 2 58.671 31.82 -14.956 1 13.35 ? C3' FMN 170 A 1 HETATM 23 O O3' FMN . . . B 2 58.74 30.392 -14.828 1 13.57 ? O3' FMN 170 A 1 HETATM 24 C C4' FMN . . . B 2 57.331 32.338 -14.428 1 12.17 ? C4' FMN 170 A 1 HETATM 25 O O4' FMN . . . B 2 57.175 31.94 -13.064 1 12.65 ? O4' FMN 170 A 1 HETATM 26 C C5' FMN . . . B 2 56.173 31.861 -15.297 1 11.43 ? C5' FMN 170 A 1 HETATM 27 O O5' FMN . . . B 2 54.987 32.571 -14.891 1 12.29 ? O5' FMN 170 A 1 HETATM 28 P P FMN . . . B 2 53.515 32.114 -15.208 1 13.29 ? P FMN 170 A 1 HETATM 29 O O1P FMN . . . B 2 53.25 30.879 -14.428 1 13.8 ? O1P FMN 170 A 1 HETATM 30 O O2P FMN . . . B 2 53.267 32.061 -16.669 1 14.3 ? O2P FMN 170 A 1 HETATM 31 O O3P FMN . . . B 2 52.596 33.195 -14.584 1 10.82 ? O3P FMN 170 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 552 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #