data_1D04 # _model_server_result.job_id zuHKKIhFp4KNDh-1KHI18Q _model_server_result.datetime_utc '2025-03-05 04:32:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":170}' # _entry.id 1D04 # _exptl.entry_id 1D04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D04 _cell.length_a 57.18 _cell.length_b 69.4 _cell.length_c 46.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1D04 _atom_sites.fract_transf_matrix[1][1] 0.017489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 170 170 FMN FMN . C 3 HOH A 1 171 171 HOH WAT . C 3 HOH A 2 172 172 HOH WAT . C 3 HOH A 3 173 173 HOH WAT . C 3 HOH A 4 174 174 HOH WAT . C 3 HOH A 5 175 175 HOH WAT . C 3 HOH A 6 176 176 HOH WAT . C 3 HOH A 7 177 177 HOH WAT . C 3 HOH A 8 178 178 HOH WAT . C 3 HOH A 9 179 179 HOH WAT . C 3 HOH A 10 180 180 HOH WAT . C 3 HOH A 11 181 181 HOH WAT . C 3 HOH A 12 182 182 HOH WAT . C 3 HOH A 13 183 183 HOH WAT . C 3 HOH A 14 184 184 HOH WAT . C 3 HOH A 15 185 185 HOH WAT . C 3 HOH A 16 186 186 HOH WAT . C 3 HOH A 17 187 187 HOH WAT . C 3 HOH A 18 188 188 HOH WAT . C 3 HOH A 19 189 189 HOH WAT . C 3 HOH A 20 190 190 HOH WAT . C 3 HOH A 21 191 191 HOH WAT . C 3 HOH A 22 192 192 HOH WAT . C 3 HOH A 23 193 193 HOH WAT . C 3 HOH A 24 194 194 HOH WAT . C 3 HOH A 25 195 195 HOH WAT . C 3 HOH A 26 196 196 HOH WAT . C 3 HOH A 27 197 197 HOH WAT . C 3 HOH A 28 198 198 HOH WAT . C 3 HOH A 29 199 199 HOH WAT . C 3 HOH A 30 200 200 HOH WAT . C 3 HOH A 31 201 201 HOH WAT . C 3 HOH A 32 202 202 HOH WAT . C 3 HOH A 33 203 203 HOH WAT . C 3 HOH A 34 204 204 HOH WAT . C 3 HOH A 35 205 205 HOH WAT . C 3 HOH A 36 206 206 HOH WAT . C 3 HOH A 37 207 207 HOH WAT . C 3 HOH A 38 208 208 HOH WAT . C 3 HOH A 39 209 209 HOH WAT . C 3 HOH A 40 210 210 HOH WAT . C 3 HOH A 41 211 211 HOH WAT . C 3 HOH A 42 212 212 HOH WAT . C 3 HOH A 43 213 213 HOH WAT . C 3 HOH A 44 214 214 HOH WAT . C 3 HOH A 45 215 215 HOH WAT . C 3 HOH A 46 216 216 HOH WAT . C 3 HOH A 47 217 217 HOH WAT . C 3 HOH A 48 218 218 HOH WAT . C 3 HOH A 49 219 219 HOH WAT . C 3 HOH A 50 220 220 HOH WAT . C 3 HOH A 51 221 221 HOH WAT . C 3 HOH A 52 222 222 HOH WAT . C 3 HOH A 53 223 223 HOH WAT . C 3 HOH A 54 224 224 HOH WAT . C 3 HOH A 55 225 225 HOH WAT . C 3 HOH A 56 226 226 HOH WAT . C 3 HOH A 57 227 227 HOH WAT . C 3 HOH A 58 228 228 HOH WAT . C 3 HOH A 59 229 229 HOH WAT . C 3 HOH A 60 230 230 HOH WAT . C 3 HOH A 61 231 231 HOH WAT . C 3 HOH A 62 232 232 HOH WAT . C 3 HOH A 63 233 233 HOH WAT . C 3 HOH A 64 234 234 HOH WAT . C 3 HOH A 65 235 235 HOH WAT . C 3 HOH A 66 236 236 HOH WAT . C 3 HOH A 67 237 237 HOH WAT . C 3 HOH A 68 238 238 HOH WAT . C 3 HOH A 69 239 239 HOH WAT . C 3 HOH A 70 240 240 HOH WAT . C 3 HOH A 71 241 241 HOH WAT . C 3 HOH A 72 242 242 HOH WAT . C 3 HOH A 73 243 243 HOH WAT . C 3 HOH A 74 244 244 HOH WAT . C 3 HOH A 75 245 245 HOH WAT . C 3 HOH A 76 246 246 HOH WAT . C 3 HOH A 77 247 247 HOH WAT . C 3 HOH A 78 248 248 HOH WAT . C 3 HOH A 79 249 249 HOH WAT . C 3 HOH A 80 250 250 HOH WAT . C 3 HOH A 81 251 251 HOH WAT . C 3 HOH A 82 252 252 HOH WAT . C 3 HOH A 83 253 253 HOH WAT . C 3 HOH A 84 254 254 HOH WAT . C 3 HOH A 85 255 255 HOH WAT . C 3 HOH A 86 256 256 HOH WAT . C 3 HOH A 87 257 257 HOH WAT . C 3 HOH A 88 258 258 HOH WAT . C 3 HOH A 89 259 259 HOH WAT . C 3 HOH A 90 260 260 HOH WAT . C 3 HOH A 91 261 261 HOH WAT . C 3 HOH A 92 262 262 HOH WAT . C 3 HOH A 93 263 263 HOH WAT . C 3 HOH A 94 264 264 HOH WAT . C 3 HOH A 95 265 265 HOH WAT . C 3 HOH A 96 266 266 HOH WAT . C 3 HOH A 97 267 267 HOH WAT . C 3 HOH A 98 268 268 HOH WAT . C 3 HOH A 99 269 269 HOH WAT . C 3 HOH A 100 270 270 HOH WAT . C 3 HOH A 101 271 271 HOH WAT . C 3 HOH A 102 272 272 HOH WAT . C 3 HOH A 103 273 273 HOH WAT . C 3 HOH A 104 274 274 HOH WAT . C 3 HOH A 105 275 275 HOH WAT . C 3 HOH A 106 276 276 HOH WAT . C 3 HOH A 107 277 277 HOH WAT . C 3 HOH A 108 278 278 HOH WAT . C 3 HOH A 109 279 279 HOH WAT . C 3 HOH A 110 280 280 HOH WAT . C 3 HOH A 111 281 281 HOH WAT . C 3 HOH A 112 282 282 HOH WAT . C 3 HOH A 113 283 283 HOH WAT . C 3 HOH A 114 284 284 HOH WAT . C 3 HOH A 115 285 285 HOH WAT . C 3 HOH A 116 286 286 HOH WAT . C 3 HOH A 117 287 287 HOH WAT . C 3 HOH A 118 288 288 HOH WAT . C 3 HOH A 119 289 289 HOH WAT . C 3 HOH A 120 290 290 HOH WAT . C 3 HOH A 121 291 291 HOH WAT . C 3 HOH A 122 292 292 HOH WAT . C 3 HOH A 123 293 293 HOH WAT . C 3 HOH A 124 294 294 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 14.674 21.779 42.42 1 8.33 ? N1 FMN 170 A 1 HETATM 2 C C2 FMN . . . B 2 15.631 21.781 43.389 1 6.76 ? C2 FMN 170 A 1 HETATM 3 O O2 FMN . . . B 2 16.825 21.932 43.118 1 11.22 ? O2 FMN 170 A 1 HETATM 4 N N3 FMN . . . B 2 15.288 21.575 44.71 1 6.82 ? N3 FMN 170 A 1 HETATM 5 C C4 FMN . . . B 2 14.012 21.323 45.134 1 7.62 ? C4 FMN 170 A 1 HETATM 6 O O4 FMN . . . B 2 13.826 21.13 46.311 1 9.45 ? O4 FMN 170 A 1 HETATM 7 C C4A FMN . . . B 2 12.937 21.307 44.105 1 7.96 ? C4A FMN 170 A 1 HETATM 8 N N5 FMN . . . B 2 11.656 21.159 44.462 1 9.52 ? N5 FMN 170 A 1 HETATM 9 C C5A FMN . . . B 2 10.707 21.306 43.43 1 8.19 ? C5A FMN 170 A 1 HETATM 10 C C6 FMN . . . B 2 9.296 21.335 43.759 1 9.46 ? C6 FMN 170 A 1 HETATM 11 C C7 FMN . . . B 2 8.346 21.538 42.758 1 9.46 ? C7 FMN 170 A 1 HETATM 12 C C7M FMN . . . B 2 6.879 21.648 43.123 1 9.66 ? C7M FMN 170 A 1 HETATM 13 C C8 FMN . . . B 2 8.756 21.641 41.385 1 9.96 ? C8 FMN 170 A 1 HETATM 14 C C8M FMN . . . B 2 7.771 21.83 40.26 1 9.42 ? C8M FMN 170 A 1 HETATM 15 C C9 FMN . . . B 2 10.112 21.577 41.043 1 7.98 ? C9 FMN 170 A 1 HETATM 16 C C9A FMN . . . B 2 11.078 21.456 42.048 1 8.56 ? C9A FMN 170 A 1 HETATM 17 N N10 FMN . . . B 2 12.448 21.572 41.744 1 6.57 ? N10 FMN 170 A 1 HETATM 18 C C10 FMN . . . B 2 13.403 21.537 42.743 1 8.14 ? C10 FMN 170 A 1 HETATM 19 C C1' FMN . . . B 2 12.833 21.806 40.351 1 9.4 ? C1' FMN 170 A 1 HETATM 20 C C2' FMN . . . B 2 12.94 20.544 39.491 1 11.23 ? C2' FMN 170 A 1 HETATM 21 O O2' FMN . . . B 2 13.943 19.609 39.91 1 10.51 ? O2' FMN 170 A 1 HETATM 22 C C3' FMN . . . B 2 13.168 20.927 38.038 1 12.56 ? C3' FMN 170 A 1 HETATM 23 O O3' FMN . . . B 2 11.967 21.491 37.49 1 13.47 ? O3' FMN 170 A 1 HETATM 24 C C4' FMN . . . B 2 13.673 19.798 37.133 1 10.47 ? C4' FMN 170 A 1 HETATM 25 O O4' FMN . . . B 2 13.854 20.294 35.803 1 7.42 ? O4' FMN 170 A 1 HETATM 26 C C5' FMN . . . B 2 12.697 18.619 37.129 1 11.8 ? C5' FMN 170 A 1 HETATM 27 O O5' FMN . . . B 2 13.277 17.568 36.333 1 12.77 ? O5' FMN 170 A 1 HETATM 28 P P FMN . . . B 2 12.411 16.301 35.801 1 12.27 ? P FMN 170 A 1 HETATM 29 O O1P FMN . . . B 2 11.738 16.597 34.548 1 11.49 ? O1P FMN 170 A 1 HETATM 30 O O2P FMN . . . B 2 11.722 15.618 36.915 1 11.36 ? O2P FMN 170 A 1 HETATM 31 O O3P FMN . . . B 2 13.618 15.411 35.334 1 11.84 ? O3P FMN 170 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #