data_1D0M # _model_server_result.job_id rY8LAJ3KDZVsPmlq2wLN3A _model_server_result.datetime_utc '2024-11-19 23:00:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1D0M # _exptl.entry_id 1D0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D0M _cell.length_a 58.631 _cell.length_b 67.751 _cell.length_c 97.757 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NDG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NDG 1 B 1 NDG ? 406 NAG 2 n B NAG 2 B 2 NAG ? 405 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 NDG . B NDG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? metalc ? metalc1 A OD1 ASP 198 A ASP 237 1_555 C CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc2 A OG SER 200 A SER 239 1_555 C CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A OD1 ASP 202 A ASP 241 1_555 C CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc4 A O HIS 204 A HIS 243 1_555 C CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 A OD2 ASP 212 A ASP 251 1_555 C CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc6 A OD1 ASP 212 A ASP 251 1_555 C CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc7 C CA CA . A CA 400 1_555 E O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D0M _atom_sites.fract_transf_matrix[1][1] 0.017056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 400 400 CA CAL . D 4 BLG A 1 401 401 BLG BLG . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 504 504 HOH HOH . E 5 HOH A 4 505 505 HOH HOH . E 5 HOH A 5 507 507 HOH HOH . E 5 HOH A 6 509 509 HOH HOH . E 5 HOH A 7 510 510 HOH HOH . E 5 HOH A 8 511 511 HOH HOH . E 5 HOH A 9 513 513 HOH HOH . E 5 HOH A 10 515 515 HOH HOH . E 5 HOH A 11 516 516 HOH HOH . E 5 HOH A 12 517 517 HOH HOH . E 5 HOH A 13 519 519 HOH HOH . E 5 HOH A 14 520 520 HOH HOH . E 5 HOH A 15 521 521 HOH HOH . E 5 HOH A 16 522 522 HOH HOH . E 5 HOH A 17 523 523 HOH HOH . E 5 HOH A 18 524 524 HOH HOH . E 5 HOH A 19 525 525 HOH HOH . E 5 HOH A 20 526 526 HOH HOH . E 5 HOH A 21 528 528 HOH HOH . E 5 HOH A 22 530 530 HOH HOH . E 5 HOH A 23 531 531 HOH HOH . E 5 HOH A 24 532 532 HOH HOH . E 5 HOH A 25 533 533 HOH HOH . E 5 HOH A 26 536 536 HOH HOH . E 5 HOH A 27 537 537 HOH HOH . E 5 HOH A 28 538 538 HOH HOH . E 5 HOH A 29 539 539 HOH HOH . E 5 HOH A 30 540 540 HOH HOH . E 5 HOH A 31 542 542 HOH HOH . E 5 HOH A 32 543 543 HOH HOH . E 5 HOH A 33 544 544 HOH HOH . E 5 HOH A 34 547 547 HOH HOH . E 5 HOH A 35 548 548 HOH HOH . E 5 HOH A 36 549 549 HOH HOH . E 5 HOH A 37 550 550 HOH HOH . E 5 HOH A 38 551 551 HOH HOH . E 5 HOH A 39 552 552 HOH HOH . E 5 HOH A 40 553 553 HOH HOH . E 5 HOH A 41 555 555 HOH HOH . E 5 HOH A 42 556 556 HOH HOH . E 5 HOH A 43 559 559 HOH HOH . E 5 HOH A 44 561 561 HOH HOH . E 5 HOH A 45 562 562 HOH HOH . E 5 HOH A 46 566 566 HOH HOH . E 5 HOH A 47 567 567 HOH HOH . E 5 HOH A 48 568 568 HOH HOH . E 5 HOH A 49 569 569 HOH HOH . E 5 HOH A 50 570 570 HOH HOH . E 5 HOH A 51 573 573 HOH HOH . E 5 HOH A 52 574 574 HOH HOH . E 5 HOH A 53 575 575 HOH HOH . E 5 HOH A 54 576 576 HOH HOH . E 5 HOH A 55 579 579 HOH HOH . E 5 HOH A 56 582 582 HOH HOH . E 5 HOH A 57 584 584 HOH HOH . E 5 HOH A 58 586 586 HOH HOH . E 5 HOH A 59 588 588 HOH HOH . E 5 HOH A 60 592 592 HOH HOH . E 5 HOH A 61 594 594 HOH HOH . E 5 HOH A 62 595 595 HOH HOH . E 5 HOH A 63 596 596 HOH HOH . E 5 HOH A 64 600 600 HOH HOH . E 5 HOH A 65 602 602 HOH HOH . E 5 HOH A 66 604 604 HOH HOH . E 5 HOH A 67 608 608 HOH HOH . E 5 HOH A 68 612 612 HOH HOH . E 5 HOH A 69 613 613 HOH HOH . E 5 HOH A 70 614 614 HOH HOH . E 5 HOH A 71 615 615 HOH HOH . E 5 HOH A 72 616 616 HOH HOH . E 5 HOH A 73 618 618 HOH HOH . E 5 HOH A 74 624 624 HOH HOH . E 5 HOH A 75 626 626 HOH HOH . E 5 HOH A 76 627 627 HOH HOH . E 5 HOH A 77 629 629 HOH HOH . E 5 HOH A 78 633 633 HOH HOH . E 5 HOH A 79 634 634 HOH HOH . E 5 HOH A 80 636 636 HOH HOH . E 5 HOH A 81 638 638 HOH HOH . E 5 HOH A 82 648 648 HOH HOH . E 5 HOH A 83 651 651 HOH HOH . E 5 HOH A 84 652 652 HOH HOH . E 5 HOH A 85 654 654 HOH HOH . E 5 HOH A 86 655 655 HOH HOH . E 5 HOH A 87 656 656 HOH HOH . E 5 HOH A 88 660 660 HOH HOH . E 5 HOH A 89 661 661 HOH HOH . E 5 HOH A 90 662 662 HOH HOH . E 5 HOH A 91 665 665 HOH HOH . E 5 HOH A 92 666 666 HOH HOH . E 5 HOH A 93 671 671 HOH HOH . E 5 HOH A 94 673 673 HOH HOH . E 5 HOH A 95 674 674 HOH HOH . E 5 HOH A 96 677 677 HOH HOH . E 5 HOH A 97 681 681 HOH HOH . E 5 HOH A 98 682 682 HOH HOH . E 5 HOH A 99 684 684 HOH HOH . E 5 HOH A 100 686 686 HOH HOH . E 5 HOH A 101 688 688 HOH HOH . E 5 HOH A 102 689 689 HOH HOH . E 5 HOH A 103 693 693 HOH HOH . E 5 HOH A 104 703 703 HOH HOH . E 5 HOH A 105 704 704 HOH HOH . E 5 HOH A 106 706 706 HOH HOH . E 5 HOH A 107 710 710 HOH HOH . E 5 HOH A 108 711 711 HOH HOH . E 5 HOH A 109 718 718 HOH HOH . E 5 HOH A 110 719 719 HOH HOH . E 5 HOH A 111 720 720 HOH HOH . E 5 HOH A 112 726 726 HOH HOH . E 5 HOH A 113 729 729 HOH HOH . E 5 HOH A 114 730 730 HOH HOH . E 5 HOH A 115 731 731 HOH HOH . E 5 HOH A 116 736 736 HOH HOH . E 5 HOH A 117 743 743 HOH HOH . E 5 HOH A 118 744 744 HOH HOH . E 5 HOH A 119 750 750 HOH HOH . E 5 HOH A 120 752 752 HOH HOH . E 5 HOH A 121 755 755 HOH HOH . E 5 HOH A 122 756 756 HOH HOH . E 5 HOH A 123 775 775 HOH HOH . E 5 HOH A 124 776 776 HOH HOH . E 5 HOH A 125 780 780 HOH HOH . E 5 HOH A 126 783 783 HOH HOH . E 5 HOH A 127 784 784 HOH HOH . E 5 HOH A 128 785 785 HOH HOH . E 5 HOH A 129 787 787 HOH HOH . E 5 HOH A 130 790 790 HOH HOH . E 5 HOH A 131 791 791 HOH HOH . E 5 HOH A 132 795 795 HOH HOH . E 5 HOH A 133 796 796 HOH HOH . E 5 HOH A 134 798 798 HOH HOH . E 5 HOH A 135 799 799 HOH HOH . E 5 HOH A 136 801 801 HOH HOH . E 5 HOH A 137 803 803 HOH HOH . E 5 HOH A 138 804 804 HOH HOH . E 5 HOH A 139 805 805 HOH HOH . E 5 HOH A 140 819 819 HOH HOH . E 5 HOH A 141 821 821 HOH HOH . E 5 HOH A 142 827 827 HOH HOH . E 5 HOH A 143 833 833 HOH HOH . E 5 HOH A 144 834 834 HOH HOH . E 5 HOH A 145 840 840 HOH HOH . E 5 HOH A 146 842 842 HOH HOH . E 5 HOH A 147 848 848 HOH HOH . E 5 HOH A 148 865 865 HOH HOH . E 5 HOH A 149 869 869 HOH HOH . E 5 HOH A 150 878 878 HOH HOH . E 5 HOH A 151 887 887 HOH HOH . E 5 HOH A 152 910 910 HOH HOH . E 5 HOH A 153 920 920 HOH HOH . E 5 HOH A 154 935 935 HOH HOH . E 5 HOH A 155 946 946 HOH HOH . E 5 HOH A 156 949 949 HOH HOH . E 5 HOH A 157 960 960 HOH HOH . E 5 HOH A 158 964 964 HOH HOH . E 5 HOH A 159 965 965 HOH HOH . E 5 HOH A 160 966 966 HOH HOH . E 5 HOH A 161 970 970 HOH HOH . E 5 HOH A 162 975 975 HOH HOH . E 5 HOH A 163 992 992 HOH HOH . E 5 HOH A 164 1021 1021 HOH HOH . E 5 HOH A 165 1059 1059 HOH HOH . E 5 HOH A 166 1091 1091 HOH HOH . E 5 HOH A 167 1092 1092 HOH HOH . E 5 HOH A 168 1095 1095 HOH HOH . E 5 HOH A 169 1101 1101 HOH HOH . E 5 HOH A 170 1102 1102 HOH HOH . E 5 HOH A 171 1103 1103 HOH HOH . E 5 HOH A 172 1104 1104 HOH HOH . E 5 HOH A 173 1105 1105 HOH HOH . E 5 HOH A 174 1106 1106 HOH HOH . E 5 HOH A 175 1107 1107 HOH HOH . E 5 HOH A 176 1108 1108 HOH HOH . E 5 HOH A 177 1109 1109 HOH HOH . E 5 HOH A 178 1110 1110 HOH HOH . E 5 HOH A 179 1112 1112 HOH HOH . E 5 HOH A 180 1113 1113 HOH HOH . E 5 HOH A 181 1115 1115 HOH HOH . E 5 HOH A 182 1116 1116 HOH HOH . E 5 HOH A 183 1117 1117 HOH HOH . E 5 HOH A 184 1119 1119 HOH HOH . E 5 HOH A 185 1121 1121 HOH HOH . E 5 HOH A 186 1122 1122 HOH HOH . E 5 HOH A 187 1123 1123 HOH HOH . E 5 HOH A 188 1124 1124 HOH HOH . E 5 HOH A 189 1125 1125 HOH HOH . E 5 HOH A 190 1126 1126 HOH HOH . E 5 HOH A 191 1128 1128 HOH HOH . E 5 HOH A 192 1129 1129 HOH HOH . E 5 HOH A 193 1131 1131 HOH HOH . E 5 HOH A 194 1132 1132 HOH HOH . E 5 HOH A 195 1133 1133 HOH HOH . E 5 HOH A 196 1134 1134 HOH HOH . E 5 HOH A 197 1135 1135 HOH HOH . E 5 HOH A 198 1136 1136 HOH HOH . E 5 HOH A 199 1137 1137 HOH HOH . E 5 HOH A 200 1138 1138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.742 _atom_site.Cartn_y 13.562 _atom_site.Cartn_z 6.132 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #