data_1D0S # _model_server_result.job_id vjRa_Xw82RcPQUHE0PCHmg _model_server_result.datetime_utc '2024-10-19 19:19:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1D0S # _exptl.entry_id 1D0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.189 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6-DIMETHYLBENZIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D0S _cell.length_a 72.1 _cell.length_b 90.2 _cell.length_c 47.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 72.1 90.2 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.008 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H10 N2' _chem_comp.formula_weight 146.189 _chem_comp.id DMD _chem_comp.mon_nstd_flag . _chem_comp.name 5,6-DIMETHYLBENZIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D0S _atom_sites.fract_transf_matrix[1][1] 0.01387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 998 998 PO4 PI . C 3 DMD A 1 999 999 DMD DMB . D 4 HOH A 1 401 401 HOH WAT . D 4 HOH A 2 402 402 HOH WAT . D 4 HOH A 3 403 403 HOH WAT . D 4 HOH A 4 404 404 HOH WAT . D 4 HOH A 5 405 405 HOH WAT . D 4 HOH A 6 406 406 HOH WAT . D 4 HOH A 7 407 407 HOH WAT . D 4 HOH A 8 408 408 HOH WAT . D 4 HOH A 9 409 409 HOH WAT . D 4 HOH A 10 410 410 HOH WAT . D 4 HOH A 11 411 411 HOH WAT . D 4 HOH A 12 412 412 HOH WAT . D 4 HOH A 13 413 413 HOH WAT . D 4 HOH A 14 414 414 HOH WAT . D 4 HOH A 15 415 415 HOH WAT . D 4 HOH A 16 416 416 HOH WAT . D 4 HOH A 17 417 417 HOH WAT . D 4 HOH A 18 418 418 HOH WAT . D 4 HOH A 19 420 420 HOH WAT . D 4 HOH A 20 422 422 HOH WAT . D 4 HOH A 21 423 423 HOH WAT . D 4 HOH A 22 425 425 HOH WAT . D 4 HOH A 23 427 427 HOH WAT . D 4 HOH A 24 428 428 HOH WAT . D 4 HOH A 25 429 429 HOH WAT . D 4 HOH A 26 430 430 HOH WAT . D 4 HOH A 27 431 431 HOH WAT . D 4 HOH A 28 432 432 HOH WAT . D 4 HOH A 29 433 433 HOH WAT . D 4 HOH A 30 434 434 HOH WAT . D 4 HOH A 31 435 435 HOH WAT . D 4 HOH A 32 439 439 HOH WAT . D 4 HOH A 33 440 440 HOH WAT . D 4 HOH A 34 442 442 HOH WAT . D 4 HOH A 35 443 443 HOH WAT . D 4 HOH A 36 444 444 HOH WAT . D 4 HOH A 37 445 445 HOH WAT . D 4 HOH A 38 446 446 HOH WAT . D 4 HOH A 39 447 447 HOH WAT . D 4 HOH A 40 448 448 HOH WAT . D 4 HOH A 41 449 449 HOH WAT . D 4 HOH A 42 450 450 HOH WAT . D 4 HOH A 43 451 451 HOH WAT . D 4 HOH A 44 452 452 HOH WAT . D 4 HOH A 45 453 453 HOH WAT . D 4 HOH A 46 454 454 HOH WAT . D 4 HOH A 47 455 455 HOH WAT . D 4 HOH A 48 458 458 HOH WAT . D 4 HOH A 49 459 459 HOH WAT . D 4 HOH A 50 460 460 HOH WAT . D 4 HOH A 51 461 461 HOH WAT . D 4 HOH A 52 462 462 HOH WAT . D 4 HOH A 53 463 463 HOH WAT . D 4 HOH A 54 464 464 HOH WAT . D 4 HOH A 55 465 465 HOH WAT . D 4 HOH A 56 466 466 HOH WAT . D 4 HOH A 57 468 468 HOH WAT . D 4 HOH A 58 469 469 HOH WAT . D 4 HOH A 59 470 470 HOH WAT . D 4 HOH A 60 471 471 HOH WAT . D 4 HOH A 61 472 472 HOH WAT . D 4 HOH A 62 473 473 HOH WAT . D 4 HOH A 63 475 475 HOH WAT . D 4 HOH A 64 476 476 HOH WAT . D 4 HOH A 65 477 477 HOH WAT . D 4 HOH A 66 478 478 HOH WAT . D 4 HOH A 67 479 479 HOH WAT . D 4 HOH A 68 480 480 HOH WAT . D 4 HOH A 69 481 481 HOH WAT . D 4 HOH A 70 482 482 HOH WAT . D 4 HOH A 71 483 483 HOH WAT . D 4 HOH A 72 484 484 HOH WAT . D 4 HOH A 73 485 485 HOH WAT . D 4 HOH A 74 486 486 HOH WAT . D 4 HOH A 75 488 488 HOH WAT . D 4 HOH A 76 489 489 HOH WAT . D 4 HOH A 77 490 490 HOH WAT . D 4 HOH A 78 491 491 HOH WAT . D 4 HOH A 79 492 492 HOH WAT . D 4 HOH A 80 494 494 HOH WAT . D 4 HOH A 81 497 497 HOH WAT . D 4 HOH A 82 498 498 HOH WAT . D 4 HOH A 83 499 499 HOH WAT . D 4 HOH A 84 500 500 HOH WAT . D 4 HOH A 85 501 501 HOH WAT . D 4 HOH A 86 502 502 HOH WAT . D 4 HOH A 87 504 504 HOH WAT . D 4 HOH A 88 505 505 HOH WAT . D 4 HOH A 89 506 506 HOH WAT . D 4 HOH A 90 507 507 HOH WAT . D 4 HOH A 91 508 508 HOH WAT . D 4 HOH A 92 509 509 HOH WAT . D 4 HOH A 93 510 510 HOH WAT . D 4 HOH A 94 511 511 HOH WAT . D 4 HOH A 95 512 512 HOH WAT . D 4 HOH A 96 513 513 HOH WAT . D 4 HOH A 97 515 515 HOH WAT . D 4 HOH A 98 516 516 HOH WAT . D 4 HOH A 99 517 517 HOH WAT . D 4 HOH A 100 518 518 HOH WAT . D 4 HOH A 101 519 519 HOH WAT . D 4 HOH A 102 520 520 HOH WAT . D 4 HOH A 103 521 521 HOH WAT . D 4 HOH A 104 522 522 HOH WAT . D 4 HOH A 105 523 523 HOH WAT . D 4 HOH A 106 524 524 HOH WAT . D 4 HOH A 107 525 525 HOH WAT . D 4 HOH A 108 526 526 HOH WAT . D 4 HOH A 109 527 527 HOH WAT . D 4 HOH A 110 528 528 HOH WAT . D 4 HOH A 111 529 529 HOH WAT . D 4 HOH A 112 530 530 HOH WAT . D 4 HOH A 113 531 531 HOH WAT . D 4 HOH A 114 532 532 HOH WAT . D 4 HOH A 115 533 533 HOH WAT . D 4 HOH A 116 534 534 HOH WAT . D 4 HOH A 117 535 535 HOH WAT . D 4 HOH A 118 536 536 HOH WAT . D 4 HOH A 119 537 537 HOH WAT . D 4 HOH A 120 538 538 HOH WAT . D 4 HOH A 121 541 541 HOH WAT . D 4 HOH A 122 542 542 HOH WAT . D 4 HOH A 123 543 543 HOH WAT . D 4 HOH A 124 544 544 HOH WAT . D 4 HOH A 125 545 545 HOH WAT . D 4 HOH A 126 547 547 HOH WAT . D 4 HOH A 127 548 548 HOH WAT . D 4 HOH A 128 549 549 HOH WAT . D 4 HOH A 129 550 550 HOH WAT . D 4 HOH A 130 552 552 HOH WAT . D 4 HOH A 131 554 554 HOH WAT . D 4 HOH A 132 555 555 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 DMD . . . C 3 56.75 41.698 14.441 1 23.22 ? N3 DMD 999 A 1 HETATM 2 N N1 DMD . . . C 3 57.415 41.178 12.379 1 26.05 ? N1 DMD 999 A 1 HETATM 3 C C2 DMD . . . C 3 56.563 40.932 13.347 1 15.02 ? C2 DMD 999 A 1 HETATM 4 C C7A DMD . . . C 3 58.239 42.21 12.874 1 29.28 ? C7A DMD 999 A 1 HETATM 5 C C3A DMD . . . C 3 57.81 42.546 14.135 1 13.9 ? C3A DMD 999 A 1 HETATM 6 C C4 DMD . . . C 3 58.461 43.539 14.856 1 14.22 ? C4 DMD 999 A 1 HETATM 7 C C5 DMD . . . C 3 59.549 44.21 14.302 1 18.5 ? C5 DMD 999 A 1 HETATM 8 C C6 DMD . . . C 3 59.983 43.887 13.009 1 12.73 ? C6 DMD 999 A 1 HETATM 9 C C7 DMD . . . C 3 59.327 42.882 12.3 1 16.59 ? C7 DMD 999 A 1 HETATM 10 C C8 DMD . . . C 3 60.248 45.316 15.082 1 13.58 ? C8 DMD 999 A 1 HETATM 11 C C9 DMD . . . C 3 61.171 44.627 12.411 1 9.89 ? C9 DMD 999 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 80 _model_server_stats.query_time_ms 403 _model_server_stats.encode_time_ms 42 _model_server_stats.element_count 11 #