data_1D11
#
_model_server_result.job_id            7De0dEe6yVyLoZ2ml7wy5w 
_model_server_result.datetime_utc      '2024-12-04 20:17:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d11 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":8}' 
#
_entry.id    1D11 
#
_exptl.entry_id    1D11 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1D11 
_cell.length_a            27.86 
_cell.length_b            27.86 
_cell.length_c            52.72 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D11 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 27.86 27.86 26.36 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NA NA . A NA 8 1_555 D O HOH . A HOH 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc2 C NA NA . A NA 8 1_555 D O HOH . A HOH 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? 
metalc ? metalc3 C NA NA . A NA 8 1_555 D O HOH . A HOH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 A N1 DG 6 A DG 6 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 A O6 DG 6 A DG 6 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 A N2 DG 6 A DG 6 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 A N3 DC 5 A DC 5 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 A O2 DC 5 A DC 5 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 A N4 DC 5 A DC 5 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 A N1 DA 4 A DA 4 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 A N6 DA 4 A DA 4 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 A N3 DT 3 A DT 3 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 A O4 DT 3 A DT 3 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 A N1 DG 2 A DG 2 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 A O6 DG 2 A DG 2 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 A N2 DG 2 A DG 2 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 A N3 DC 1 A DC 1 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 A O2 DC 1 A DC 1 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 A N4 DC 1 A DC 1 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1D11 
_atom_sites.fract_transf_matrix[1][1]    0.035894 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.035894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM1 A 1 7 7 DM1 DM1 . 
C 3 NA A 1 8 8 NA NA . 
D 4 HOH A 1 9 9 HOH HOH . 
D 4 HOH A 2 10 10 HOH HOH . 
D 4 HOH A 3 11 11 HOH HOH . 
D 4 HOH A 4 12 12 HOH HOH . 
D 4 HOH A 5 13 13 HOH HOH . 
D 4 HOH A 6 14 14 HOH HOH . 
D 4 HOH A 7 15 15 HOH HOH . 
D 4 HOH A 8 16 16 HOH HOH . 
D 4 HOH A 9 17 17 HOH HOH . 
D 4 HOH A 10 18 18 HOH HOH . 
D 4 HOH A 11 19 19 HOH HOH . 
D 4 HOH A 12 20 20 HOH HOH . 
D 4 HOH A 13 21 21 HOH HOH . 
D 4 HOH A 14 22 22 HOH HOH . 
D 4 HOH A 15 23 23 HOH HOH . 
D 4 HOH A 16 24 24 HOH HOH . 
D 4 HOH A 17 25 25 HOH HOH . 
D 4 HOH A 18 26 26 HOH HOH . 
D 4 HOH A 19 27 27 HOH HOH . 
D 4 HOH A 20 28 28 HOH HOH . 
D 4 HOH A 21 29 29 HOH HOH . 
D 4 HOH A 22 30 30 HOH HOH . 
D 4 HOH A 23 31 31 HOH HOH . 
D 4 HOH A 24 32 32 HOH HOH . 
D 4 HOH A 25 33 33 HOH HOH . 
D 4 HOH A 26 34 34 HOH HOH . 
D 4 HOH A 27 35 35 HOH HOH . 
D 4 HOH A 28 36 36 HOH HOH . 
D 4 HOH A 29 37 37 HOH HOH . 
D 4 HOH A 30 38 38 HOH HOH . 
D 4 HOH A 31 39 39 HOH HOH . 
D 4 HOH A 32 40 40 HOH HOH . 
D 4 HOH A 33 41 41 HOH HOH . 
D 4 HOH A 34 42 42 HOH HOH . 
D 4 HOH A 35 43 43 HOH HOH . 
D 4 HOH A 36 44 44 HOH HOH . 
D 4 HOH A 37 45 45 HOH HOH . 
D 4 HOH A 38 46 46 HOH HOH . 
D 4 HOH A 39 47 47 HOH HOH . 
D 4 HOH A 40 48 48 HOH HOH . 
D 4 HOH A 41 49 49 HOH HOH . 
D 4 HOH A 42 50 50 HOH HOH . 
D 4 HOH A 43 51 51 HOH HOH . 
D 4 HOH A 44 52 52 HOH HOH . 
D 4 HOH A 45 53 53 HOH HOH . 
D 4 HOH A 46 54 54 HOH HOH . 
D 4 HOH A 47 55 55 HOH HOH . 
D 4 HOH A 48 56 56 HOH HOH . 
D 4 HOH A 49 57 57 HOH HOH . 
D 4 HOH A 50 58 58 HOH HOH . 
D 4 HOH A 51 59 59 HOH HOH . 
D 4 HOH A 52 60 60 HOH HOH . 
D 4 HOH A 53 61 61 HOH HOH . 
D 4 HOH A 54 62 62 HOH HOH . 
D 4 HOH A 55 63 63 HOH HOH . 
D 4 HOH A 56 64 64 HOH HOH . 
D 4 HOH A 57 65 65 HOH HOH . 
D 4 HOH A 58 66 66 HOH HOH . 
D 4 HOH A 59 67 67 HOH HOH . 
D 4 HOH A 60 68 68 HOH HOH . 
D 4 HOH A 61 69 69 HOH HOH . 
D 4 HOH A 62 70 70 HOH HOH . 
D 4 HOH A 63 71 71 HOH HOH . 
D 4 HOH A 64 72 72 HOH HOH . 
D 4 HOH A 65 73 73 HOH HOH . 
D 4 HOH A 66 74 74 HOH HOH . 
D 4 HOH A 67 75 75 HOH HOH . 
D 4 HOH A 68 76 76 HOH HOH . 
D 4 HOH A 69 77 77 HOH HOH . 
D 4 HOH A 70 78 78 HOH HOH . 
D 4 HOH A 71 79 79 HOH HOH . 
D 4 HOH A 72 80 80 HOH HOH . 
D 4 HOH A 73 81 81 HOH HOH . 
D 4 HOH A 74 82 82 HOH HOH . 
D 4 HOH A 75 83 83 HOH HOH . 
D 4 HOH A 76 84 84 HOH HOH . 
D 4 HOH A 77 85 85 HOH HOH . 
D 4 HOH A 78 86 86 HOH HOH . 
D 4 HOH A 79 87 87 HOH HOH . 
D 4 HOH A 80 88 88 HOH HOH . 
D 4 HOH A 81 89 89 HOH HOH . 
D 4 HOH A 82 90 90 HOH HOH . 
D 4 HOH A 83 91 91 HOH HOH . 
D 4 HOH A 84 92 92 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               13.338 
_atom_site.Cartn_y               8.211 
_atom_site.Cartn_z               23.685 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           8 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#