data_1D1G # _model_server_result.job_id bv0qe62ic8tmN5EY_n5NYQ _model_server_result.datetime_utc '2025-03-03 00:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":170}' # _entry.id 1D1G # _exptl.entry_id 1D1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 94.5 _cell.angle_beta 95.31 _cell.angle_gamma 110.15 _cell.entry_id 1D1G _cell.length_a 35.525 _cell.length_b 51.419 _cell.length_c 52.961 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 262 n n PA O2A NDP sing 263 n n PA O5B NDP sing 264 n n PA O3 NDP sing 265 n n O2A HOA2 NDP sing 266 n n O5B C5B NDP sing 267 n n C5B C4B NDP sing 268 n n C5B H51A NDP sing 269 n n C5B H52A NDP sing 270 n n C4B O4B NDP sing 271 n n C4B C3B NDP sing 272 n n C4B H4B NDP sing 273 n n O4B C1B NDP sing 274 n n C3B O3B NDP sing 275 n n C3B C2B NDP sing 276 n n C3B H3B NDP sing 277 n n O3B HO3A NDP sing 278 n n C2B O2B NDP sing 279 n n C2B C1B NDP sing 280 n n C2B H2B NDP sing 281 n n O2B P2B NDP sing 282 n n C1B N9A NDP sing 283 n n C1B H1B NDP sing 284 n n N9A C8A NDP sing 285 n y N9A C4A NDP sing 286 n y C8A N7A NDP doub 287 n y C8A H8A NDP sing 288 n n N7A C5A NDP sing 289 n y C5A C6A NDP sing 290 n y C5A C4A NDP doub 291 n y C6A N6A NDP sing 292 n n C6A N1A NDP doub 293 n y N6A H61A NDP sing 294 n n N6A H62A NDP sing 295 n n N1A C2A NDP sing 296 n y C2A N3A NDP doub 297 n y C2A H2A NDP sing 298 n n N3A C4A NDP sing 299 n y O3 PN NDP sing 300 n n PN O1N NDP doub 301 n n PN O2N NDP sing 302 n n PN O5D NDP sing 303 n n O2N H21N NDP sing 304 n n O5D C5D NDP sing 305 n n C5D C4D NDP sing 306 n n C5D H51N NDP sing 307 n n C5D H52N NDP sing 308 n n C4D O4D NDP sing 309 n n C4D C3D NDP sing 310 n n C4D H4D NDP sing 311 n n O4D C1D NDP sing 312 n n C3D O3D NDP sing 313 n n C3D C2D NDP sing 314 n n C3D H3D NDP sing 315 n n O3D HO3N NDP sing 316 n n C2D O2D NDP sing 317 n n C2D C1D NDP sing 318 n n C2D H2D NDP sing 319 n n O2D HO2N NDP sing 320 n n C1D N1N NDP sing 321 n n C1D H1D NDP sing 322 n n N1N C2N NDP sing 323 n n N1N C6N NDP sing 324 n n C2N C3N NDP doub 325 n n C2N H2N NDP sing 326 n n C3N C7N NDP sing 327 n n C3N C4N NDP sing 328 n n C7N O7N NDP doub 329 n n C7N N7N NDP sing 330 n n N7N H71N NDP sing 331 n n N7N H72N NDP sing 332 n n C4N C5N NDP sing 333 n n C4N H41N NDP sing 334 n n C4N H42N NDP sing 335 n n C5N C6N NDP doub 336 n n C5N H5N NDP sing 337 n n C6N H6N NDP sing 338 n n P2B O1X NDP doub 339 n n P2B O2X NDP sing 340 n n P2B O3X NDP sing 341 n n O2X HOP2 NDP sing 342 n n O3X HOP3 NDP sing 343 n n # _atom_sites.entry_id 1D1G _atom_sites.fract_transf_matrix[1][1] 0.028149 _atom_sites.fract_transf_matrix[1][2] 0.010329 _atom_sites.fract_transf_matrix[1][3] 0.003863 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020716 _atom_sites.fract_transf_matrix[2][3] 0.002462 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 170 170 NDP NDP . D 3 MTX A 1 171 171 MTX MTX . E 2 NDP B 1 170 170 NDP NDP . F 3 MTX B 1 171 171 MTX MTX . G 4 HOH A 1 501 501 HOH H2O . G 4 HOH A 2 502 502 HOH H2O . G 4 HOH A 3 506 506 HOH H2O . G 4 HOH A 4 507 507 HOH H2O . G 4 HOH A 5 511 511 HOH H2O . G 4 HOH A 6 512 512 HOH H2O . G 4 HOH A 7 513 513 HOH H2O . G 4 HOH A 8 516 516 HOH H2O . G 4 HOH A 9 518 518 HOH H2O . G 4 HOH A 10 519 519 HOH H2O . G 4 HOH A 11 523 523 HOH H2O . G 4 HOH A 12 524 524 HOH H2O . G 4 HOH A 13 525 525 HOH H2O . G 4 HOH A 14 527 527 HOH H2O . G 4 HOH A 15 529 529 HOH H2O . G 4 HOH A 16 530 530 HOH H2O . G 4 HOH A 17 534 534 HOH H2O . G 4 HOH A 18 536 536 HOH H2O . G 4 HOH A 19 537 537 HOH H2O . G 4 HOH A 20 538 538 HOH H2O . G 4 HOH A 21 539 539 HOH H2O . G 4 HOH A 22 540 540 HOH H2O . G 4 HOH A 23 541 541 HOH H2O . G 4 HOH A 24 542 542 HOH H2O . G 4 HOH A 25 543 543 HOH H2O . G 4 HOH A 26 544 544 HOH H2O . G 4 HOH A 27 545 545 HOH H2O . G 4 HOH A 28 547 547 HOH H2O . G 4 HOH A 29 548 548 HOH H2O . G 4 HOH A 30 552 552 HOH H2O . G 4 HOH A 31 554 554 HOH H2O . G 4 HOH A 32 555 555 HOH H2O . G 4 HOH A 33 556 556 HOH H2O . G 4 HOH A 34 560 560 HOH H2O . G 4 HOH A 35 561 561 HOH H2O . G 4 HOH A 36 562 562 HOH H2O . G 4 HOH A 37 563 563 HOH H2O . G 4 HOH A 38 567 567 HOH H2O . G 4 HOH A 39 568 568 HOH H2O . G 4 HOH A 40 572 572 HOH H2O . G 4 HOH A 41 573 573 HOH H2O . G 4 HOH A 42 574 574 HOH H2O . G 4 HOH A 43 578 578 HOH H2O . G 4 HOH A 44 579 579 HOH H2O . G 4 HOH A 45 580 580 HOH H2O . G 4 HOH A 46 581 581 HOH H2O . G 4 HOH A 47 582 582 HOH H2O . G 4 HOH A 48 583 583 HOH H2O . G 4 HOH A 49 584 584 HOH H2O . G 4 HOH A 50 586 586 HOH H2O . G 4 HOH A 51 589 589 HOH H2O . G 4 HOH A 52 592 592 HOH H2O . G 4 HOH A 53 593 593 HOH H2O . G 4 HOH A 54 596 596 HOH H2O . G 4 HOH A 55 599 599 HOH H2O . G 4 HOH A 56 601 601 HOH H2O . G 4 HOH A 57 602 602 HOH H2O . G 4 HOH A 58 603 603 HOH H2O . G 4 HOH A 59 604 604 HOH H2O . G 4 HOH A 60 605 605 HOH H2O . G 4 HOH A 61 607 607 HOH H2O . G 4 HOH A 62 608 608 HOH H2O . G 4 HOH A 63 609 609 HOH H2O . G 4 HOH A 64 613 613 HOH H2O . G 4 HOH A 65 620 620 HOH H2O . G 4 HOH A 66 623 623 HOH H2O . G 4 HOH A 67 625 625 HOH H2O . G 4 HOH A 68 626 626 HOH H2O . G 4 HOH A 69 629 629 HOH H2O . G 4 HOH A 70 630 630 HOH H2O . G 4 HOH A 71 634 634 HOH H2O . G 4 HOH A 72 635 635 HOH H2O . G 4 HOH A 73 639 639 HOH H2O . G 4 HOH A 74 642 642 HOH H2O . G 4 HOH A 75 643 643 HOH H2O . G 4 HOH A 76 644 644 HOH H2O . G 4 HOH A 77 647 647 HOH H2O . G 4 HOH A 78 651 651 HOH H2O . G 4 HOH A 79 654 654 HOH H2O . G 4 HOH A 80 655 655 HOH H2O . G 4 HOH A 81 657 657 HOH H2O . H 4 HOH B 1 500 500 HOH H2O . H 4 HOH B 2 503 503 HOH H2O . H 4 HOH B 3 504 504 HOH H2O . H 4 HOH B 4 505 505 HOH H2O . H 4 HOH B 5 508 508 HOH H2O . H 4 HOH B 6 509 509 HOH H2O . H 4 HOH B 7 510 510 HOH H2O . H 4 HOH B 8 514 514 HOH H2O . H 4 HOH B 9 515 515 HOH H2O . H 4 HOH B 10 517 517 HOH H2O . H 4 HOH B 11 520 520 HOH H2O . H 4 HOH B 12 521 521 HOH H2O . H 4 HOH B 13 522 522 HOH H2O . H 4 HOH B 14 526 526 HOH H2O . H 4 HOH B 15 528 528 HOH H2O . H 4 HOH B 16 531 531 HOH H2O . H 4 HOH B 17 532 532 HOH H2O . H 4 HOH B 18 533 533 HOH H2O . H 4 HOH B 19 535 535 HOH H2O . H 4 HOH B 20 546 546 HOH H2O . H 4 HOH B 21 549 549 HOH H2O . H 4 HOH B 22 550 550 HOH H2O . H 4 HOH B 23 551 551 HOH H2O . H 4 HOH B 24 553 553 HOH H2O . H 4 HOH B 25 557 557 HOH H2O . H 4 HOH B 26 558 558 HOH H2O . H 4 HOH B 27 559 559 HOH H2O . H 4 HOH B 28 564 564 HOH H2O . H 4 HOH B 29 565 565 HOH H2O . H 4 HOH B 30 566 566 HOH H2O . H 4 HOH B 31 569 569 HOH H2O . H 4 HOH B 32 570 570 HOH H2O . H 4 HOH B 33 571 571 HOH H2O . H 4 HOH B 34 575 575 HOH H2O . H 4 HOH B 35 576 576 HOH H2O . H 4 HOH B 36 577 577 HOH H2O . H 4 HOH B 37 585 585 HOH H2O . H 4 HOH B 38 587 587 HOH H2O . H 4 HOH B 39 588 588 HOH H2O . H 4 HOH B 40 590 590 HOH H2O . H 4 HOH B 41 591 591 HOH H2O . H 4 HOH B 42 594 594 HOH H2O . H 4 HOH B 43 595 595 HOH H2O . H 4 HOH B 44 597 597 HOH H2O . H 4 HOH B 45 598 598 HOH H2O . H 4 HOH B 46 600 600 HOH H2O . H 4 HOH B 47 606 606 HOH H2O . H 4 HOH B 48 610 610 HOH H2O . H 4 HOH B 49 611 611 HOH H2O . H 4 HOH B 50 612 612 HOH H2O . H 4 HOH B 51 614 614 HOH H2O . H 4 HOH B 52 615 615 HOH H2O . H 4 HOH B 53 616 616 HOH H2O . H 4 HOH B 54 617 617 HOH H2O . H 4 HOH B 55 618 618 HOH H2O . H 4 HOH B 56 619 619 HOH H2O . H 4 HOH B 57 621 621 HOH H2O . H 4 HOH B 58 622 622 HOH H2O . H 4 HOH B 59 624 624 HOH H2O . H 4 HOH B 60 627 627 HOH H2O . H 4 HOH B 61 628 628 HOH H2O . H 4 HOH B 62 631 631 HOH H2O . H 4 HOH B 63 632 632 HOH H2O . H 4 HOH B 64 633 633 HOH H2O . H 4 HOH B 65 636 636 HOH H2O . H 4 HOH B 66 637 637 HOH H2O . H 4 HOH B 67 638 638 HOH H2O . H 4 HOH B 68 640 640 HOH H2O . H 4 HOH B 69 641 641 HOH H2O . H 4 HOH B 70 645 645 HOH H2O . H 4 HOH B 71 646 646 HOH H2O . H 4 HOH B 72 648 648 HOH H2O . H 4 HOH B 73 649 649 HOH H2O . H 4 HOH B 74 650 650 HOH H2O . H 4 HOH B 75 652 652 HOH H2O . H 4 HOH B 76 653 653 HOH H2O . H 4 HOH B 77 656 656 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 23.868 15.779 35.166 1 58.68 ? PA NDP 170 B 1 HETATM 2 O O1A NDP . . . E 2 22.456 15.539 34.793 1 60.1 ? O1A NDP 170 B 1 HETATM 3 O O2A NDP . . . E 2 24.263 15.033 36.317 1 60.42 ? O2A NDP 170 B 1 HETATM 4 O O5B NDP . . . E 2 24.755 15.281 33.895 1 60.96 ? O5B NDP 170 B 1 HETATM 5 C C5B NDP . . . E 2 26.176 15.464 33.796 1 63.87 ? C5B NDP 170 B 1 HETATM 6 C C4B NDP . . . E 2 26.654 14.699 32.568 1 66.26 ? C4B NDP 170 B 1 HETATM 7 O O4B NDP . . . E 2 25.824 14.811 31.431 1 67.14 ? O4B NDP 170 B 1 HETATM 8 C C3B NDP . . . E 2 28.081 14.825 32.227 1 67.33 ? C3B NDP 170 B 1 HETATM 9 O O3B NDP . . . E 2 28.894 13.875 32.935 1 67.9 ? O3B NDP 170 B 1 HETATM 10 C C2B NDP . . . E 2 28.118 14.594 30.728 1 68.34 ? C2B NDP 170 B 1 HETATM 11 O O2B NDP . . . E 2 28.39 13.196 30.376 1 69.27 ? O2B NDP 170 B 1 HETATM 12 C C1B NDP . . . E 2 26.665 14.842 30.27 1 68.25 ? C1B NDP 170 B 1 HETATM 13 N N9A NDP . . . E 2 26.394 16.086 29.458 1 68.96 ? N9A NDP 170 B 1 HETATM 14 C C8A NDP . . . E 2 26.001 17.356 29.849 1 69.33 ? C8A NDP 170 B 1 HETATM 15 N N7A NDP . . . E 2 25.865 18.171 28.832 1 69.55 ? N7A NDP 170 B 1 HETATM 16 C C5A NDP . . . E 2 26.182 17.407 27.728 1 69.82 ? C5A NDP 170 B 1 HETATM 17 C C6A NDP . . . E 2 26.231 17.691 26.328 1 70.01 ? C6A NDP 170 B 1 HETATM 18 N N6A NDP . . . E 2 25.938 18.89 25.85 1 70.49 ? N6A NDP 170 B 1 HETATM 19 N N1A NDP . . . E 2 26.591 16.692 25.463 1 70.05 ? N1A NDP 170 B 1 HETATM 20 C C2A NDP . . . E 2 26.892 15.469 25.933 1 69.74 ? C2A NDP 170 B 1 HETATM 21 N N3A NDP . . . E 2 26.871 15.123 27.223 1 69.53 ? N3A NDP 170 B 1 HETATM 22 C C4A NDP . . . E 2 26.501 16.159 28.07 1 69.52 ? C4A NDP 170 B 1 HETATM 23 O O3 NDP . . . E 2 24.261 17.315 35.419 1 57.95 ? O3 NDP 170 B 1 HETATM 24 P PN NDP . . . E 2 24.819 18.092 36.755 1 55.83 ? PN NDP 170 B 1 HETATM 25 O O1N NDP . . . E 2 25.253 19.421 36.31 1 56.34 ? O1N NDP 170 B 1 HETATM 26 O O2N NDP . . . E 2 25.881 17.18 37.306 1 55.92 ? O2N NDP 170 B 1 HETATM 27 O O5D NDP . . . E 2 23.679 18.088 37.927 1 54.54 ? O5D NDP 170 B 1 HETATM 28 C C5D NDP . . . E 2 23.169 16.857 38.564 1 51.81 ? C5D NDP 170 B 1 HETATM 29 C C4D NDP . . . E 2 22.899 17.065 40.072 1 50.61 ? C4D NDP 170 B 1 HETATM 30 O O4D NDP . . . E 2 21.629 17.675 40.232 1 49.45 ? O4D NDP 170 B 1 HETATM 31 C C3D NDP . . . E 2 22.839 15.788 40.945 1 50.14 ? C3D NDP 170 B 1 HETATM 32 O O3D NDP . . . E 2 23.383 15.941 42.194 1 50.13 ? O3D NDP 170 B 1 HETATM 33 C C2D NDP . . . E 2 21.376 15.43 41.053 1 49.59 ? C2D NDP 170 B 1 HETATM 34 O O2D NDP . . . E 2 21.017 14.895 42.306 1 49.65 ? O2D NDP 170 B 1 HETATM 35 C C1D NDP . . . E 2 20.694 16.802 40.845 1 48.63 ? C1D NDP 170 B 1 HETATM 36 N N1N NDP . . . E 2 19.439 16.71 40.067 1 47.38 ? N1N NDP 170 B 1 HETATM 37 C C2N NDP . . . E 2 18.343 17.293 40.73 1 46.44 ? C2N NDP 170 B 1 HETATM 38 C C3N NDP . . . E 2 17.072 17.276 40.068 1 45.7 ? C3N NDP 170 B 1 HETATM 39 C C7N NDP . . . E 2 15.895 17.874 40.705 1 45.11 ? C7N NDP 170 B 1 HETATM 40 O O7N NDP . . . E 2 14.796 17.893 40.172 1 43.34 ? O7N NDP 170 B 1 HETATM 41 N N7N NDP . . . E 2 15.982 18.439 41.922 1 45.62 ? N7N NDP 170 B 1 HETATM 42 C C4N NDP . . . E 2 16.985 16.679 38.799 1 45.81 ? C4N NDP 170 B 1 HETATM 43 C C5N NDP . . . E 2 18.057 16.114 38.173 1 46.25 ? C5N NDP 170 B 1 HETATM 44 C C6N NDP . . . E 2 19.293 16.128 38.802 1 46.27 ? C6N NDP 170 B 1 HETATM 45 P P2B NDP . . . E 2 29.855 12.546 30.145 1 69.76 ? P2B NDP 170 B 1 HETATM 46 O O1X NDP . . . E 2 30.267 12.731 28.729 1 69.36 ? O1X NDP 170 B 1 HETATM 47 O O2X NDP . . . E 2 30.667 13.288 31.124 1 69.54 ? O2X NDP 170 B 1 HETATM 48 O O3X NDP . . . E 2 29.638 11.146 30.549 1 69.29 ? O3X NDP 170 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #