data_1D1P # _model_server_result.job_id pYn84P0nTjzIQatGaz_vaA _model_server_result.datetime_utc '2024-11-20 01:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 1D1P # _exptl.entry_id 1D1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D1P _cell.length_a 41.586 _cell.length_b 67.647 _cell.length_c 115.162 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 1D1P _atom_sites.fract_transf_matrix[1][1] 0.024047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EPE A 1 201 1 EPE EPE . D 2 EPE B 1 202 2 EPE EPE . E 3 HOH A 1 202 1 HOH HOH . E 3 HOH A 2 203 2 HOH HOH . E 3 HOH A 3 204 3 HOH HOH . E 3 HOH A 4 205 4 HOH HOH . E 3 HOH A 5 206 5 HOH HOH . E 3 HOH A 6 207 6 HOH HOH . E 3 HOH A 7 208 7 HOH HOH . E 3 HOH A 8 209 15 HOH HOH . E 3 HOH A 9 210 16 HOH HOH . E 3 HOH A 10 211 17 HOH HOH . E 3 HOH A 11 212 18 HOH HOH . E 3 HOH A 12 213 19 HOH HOH . E 3 HOH A 13 214 20 HOH HOH . E 3 HOH A 14 215 21 HOH HOH . E 3 HOH A 15 216 33 HOH HOH . E 3 HOH A 16 217 36 HOH HOH . E 3 HOH A 17 218 37 HOH HOH . E 3 HOH A 18 219 38 HOH HOH . E 3 HOH A 19 220 39 HOH HOH . E 3 HOH A 20 221 40 HOH HOH . E 3 HOH A 21 222 41 HOH HOH . E 3 HOH A 22 223 42 HOH HOH . E 3 HOH A 23 224 43 HOH HOH . E 3 HOH A 24 225 44 HOH HOH . E 3 HOH A 25 226 45 HOH HOH . E 3 HOH A 26 227 46 HOH HOH . E 3 HOH A 27 228 52 HOH HOH . E 3 HOH A 28 229 53 HOH HOH . E 3 HOH A 29 230 54 HOH HOH . E 3 HOH A 30 231 55 HOH HOH . E 3 HOH A 31 232 56 HOH HOH . E 3 HOH A 32 233 57 HOH HOH . E 3 HOH A 33 234 58 HOH HOH . E 3 HOH A 34 235 59 HOH HOH . E 3 HOH A 35 236 60 HOH HOH . E 3 HOH A 36 237 61 HOH HOH . E 3 HOH A 37 238 62 HOH HOH . E 3 HOH A 38 239 63 HOH HOH . E 3 HOH A 39 240 64 HOH HOH . E 3 HOH A 40 241 77 HOH HOH . E 3 HOH A 41 242 78 HOH HOH . E 3 HOH A 42 243 79 HOH HOH . E 3 HOH A 43 244 80 HOH HOH . E 3 HOH A 44 245 81 HOH HOH . E 3 HOH A 45 246 82 HOH HOH . E 3 HOH A 46 247 83 HOH HOH . E 3 HOH A 47 248 84 HOH HOH . E 3 HOH A 48 249 85 HOH HOH . E 3 HOH A 49 250 86 HOH HOH . E 3 HOH A 50 251 87 HOH HOH . E 3 HOH A 51 252 88 HOH HOH . E 3 HOH A 52 253 89 HOH HOH . E 3 HOH A 53 254 90 HOH HOH . E 3 HOH A 54 255 94 HOH HOH . E 3 HOH A 55 256 95 HOH HOH . E 3 HOH A 56 257 96 HOH HOH . E 3 HOH A 57 258 97 HOH HOH . E 3 HOH A 58 259 98 HOH HOH . E 3 HOH A 59 260 99 HOH HOH . E 3 HOH A 60 261 100 HOH HOH . E 3 HOH A 61 262 101 HOH HOH . E 3 HOH A 62 263 102 HOH HOH . E 3 HOH A 63 264 104 HOH HOH . E 3 HOH A 64 265 105 HOH HOH . F 3 HOH B 1 203 8 HOH HOH . F 3 HOH B 2 204 9 HOH HOH . F 3 HOH B 3 205 10 HOH HOH . F 3 HOH B 4 206 11 HOH HOH . F 3 HOH B 5 207 12 HOH HOH . F 3 HOH B 6 208 13 HOH HOH . F 3 HOH B 7 209 14 HOH HOH . F 3 HOH B 8 210 22 HOH HOH . F 3 HOH B 9 211 23 HOH HOH . F 3 HOH B 10 212 24 HOH HOH . F 3 HOH B 11 213 25 HOH HOH . F 3 HOH B 12 214 26 HOH HOH . F 3 HOH B 13 215 27 HOH HOH . F 3 HOH B 14 216 28 HOH HOH . F 3 HOH B 15 217 29 HOH HOH . F 3 HOH B 16 218 30 HOH HOH . F 3 HOH B 17 219 31 HOH HOH . F 3 HOH B 18 220 32 HOH HOH . F 3 HOH B 19 221 34 HOH HOH . F 3 HOH B 20 222 35 HOH HOH . F 3 HOH B 21 223 47 HOH HOH . F 3 HOH B 22 224 48 HOH HOH . F 3 HOH B 23 225 49 HOH HOH . F 3 HOH B 24 226 50 HOH HOH . F 3 HOH B 25 227 51 HOH HOH . F 3 HOH B 26 228 65 HOH HOH . F 3 HOH B 27 229 66 HOH HOH . F 3 HOH B 28 230 67 HOH HOH . F 3 HOH B 29 231 68 HOH HOH . F 3 HOH B 30 232 69 HOH HOH . F 3 HOH B 31 233 70 HOH HOH . F 3 HOH B 32 234 71 HOH HOH . F 3 HOH B 33 235 72 HOH HOH . F 3 HOH B 34 236 73 HOH HOH . F 3 HOH B 35 237 74 HOH HOH . F 3 HOH B 36 238 75 HOH HOH . F 3 HOH B 37 239 76 HOH HOH . F 3 HOH B 38 240 91 HOH HOH . F 3 HOH B 39 241 92 HOH HOH . F 3 HOH B 40 242 93 HOH HOH . F 3 HOH B 41 243 103 HOH HOH . F 3 HOH B 42 244 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 2 36.163 10.132 19.052 1 35.8 ? N1 EPE 202 B 1 HETATM 2 C C2 EPE . . . D 2 36.894 9.743 20.267 1 36.53 ? C2 EPE 202 B 1 HETATM 3 C C3 EPE . . . D 2 36.372 10.645 21.403 1 34.41 ? C3 EPE 202 B 1 HETATM 4 N N4 EPE . . . D 2 36.54 12.12 21.124 1 33.33 ? N4 EPE 202 B 1 HETATM 5 C C5 EPE . . . D 2 35.948 12.45 19.774 1 36.24 ? C5 EPE 202 B 1 HETATM 6 C C6 EPE . . . D 2 36.477 11.539 18.668 1 28.2 ? C6 EPE 202 B 1 HETATM 7 C C7 EPE . . . D 2 35.761 12.842 22.196 1 40.82 ? C7 EPE 202 B 1 HETATM 8 C C8 EPE . . . D 2 35.705 14.352 22.102 1 49.69 ? C8 EPE 202 B 1 HETATM 9 O O8 EPE . . . D 2 36.962 15.038 22.155 1 68.41 ? O8 EPE 202 B 1 HETATM 10 C C9 EPE . . . D 2 35.981 9.171 17.964 1 36.36 ? C9 EPE 202 B 1 HETATM 11 C C10 EPE . . . D 2 37.155 8.78 17.074 1 25.53 ? C10 EPE 202 B 1 HETATM 12 S S EPE . . . D 2 36.393 7.732 15.791 1 14.21 ? S EPE 202 B 1 HETATM 13 O O1S EPE . . . D 2 35.021 8.135 15.637 1 8.69 ? O1S EPE 202 B 1 HETATM 14 O O2S EPE . . . D 2 37.176 7.895 14.566 1 20.34 ? O2S EPE 202 B 1 HETATM 15 O O3S EPE . . . D 2 36.483 6.351 16.301 1 15.07 ? O3S EPE 202 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #