data_1D2S # _model_server_result.job_id K16-1Ukp8WRwIQnlcrx70g _model_server_result.datetime_utc '2024-11-13 15:55:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1D2S # _exptl.entry_id 1D2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1D2S _cell.length_a 104.04 _cell.length_b 104.04 _cell.length_c 84.43 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D2S _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 84.43 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 146 A CYS 164 1_555 A SG CYS 170 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc1 A OD1 ASP 38 A ASP 50 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc2 A OD2 ASP 38 A ASP 50 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A O GLU 40 A GLU 52 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 A OD1 ASP 53 A ASP 65 1_555 C CA CA . A CA 501 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 A NE2 HIS 71 A HIS 83 1_555 C CA CA . A CA 501 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 A NE2 HIS 118 A HIS 136 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc7 A O ALA 142 A ALA 160 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 B CA CA . A CA 401 1_555 E O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc9 B CA CA . A CA 401 1_555 E O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 B CA CA . A CA 401 1_555 E O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D2S _atom_sites.fract_transf_matrix[1][1] 0.00961 _atom_sites.fract_transf_matrix[1][2] 0.00555 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA IUM . C 2 CA A 1 501 501 CA IUM . D 3 DHT A 1 301 301 DHT DHT . E 4 HOH A 1 601 601 HOH HOH . E 4 HOH A 2 602 602 HOH HOH . E 4 HOH A 3 603 603 HOH HOH . E 4 HOH A 4 604 604 HOH HOH . E 4 HOH A 5 605 605 HOH HOH . E 4 HOH A 6 606 606 HOH HOH . E 4 HOH A 7 607 607 HOH HOH . E 4 HOH A 8 608 608 HOH HOH . E 4 HOH A 9 609 609 HOH HOH . E 4 HOH A 10 610 610 HOH HOH . E 4 HOH A 11 611 611 HOH HOH . E 4 HOH A 12 612 612 HOH HOH . E 4 HOH A 13 613 613 HOH HOH . E 4 HOH A 14 614 614 HOH HOH . E 4 HOH A 15 615 615 HOH HOH . E 4 HOH A 16 616 616 HOH HOH . E 4 HOH A 17 617 617 HOH HOH . E 4 HOH A 18 618 618 HOH HOH . E 4 HOH A 19 619 619 HOH HOH . E 4 HOH A 20 620 620 HOH HOH . E 4 HOH A 21 621 621 HOH HOH . E 4 HOH A 22 622 622 HOH HOH . E 4 HOH A 23 623 623 HOH HOH . E 4 HOH A 24 624 624 HOH HOH . E 4 HOH A 25 625 625 HOH HOH . E 4 HOH A 26 626 626 HOH HOH . E 4 HOH A 27 627 627 HOH HOH . E 4 HOH A 28 628 628 HOH HOH . E 4 HOH A 29 629 629 HOH HOH . E 4 HOH A 30 630 630 HOH HOH . E 4 HOH A 31 631 631 HOH HOH . E 4 HOH A 32 632 632 HOH HOH . E 4 HOH A 33 633 633 HOH HOH . E 4 HOH A 34 634 634 HOH HOH . E 4 HOH A 35 635 635 HOH HOH . E 4 HOH A 36 636 636 HOH HOH . E 4 HOH A 37 637 637 HOH HOH . E 4 HOH A 38 638 638 HOH HOH . E 4 HOH A 39 639 639 HOH HOH . E 4 HOH A 40 640 640 HOH HOH . E 4 HOH A 41 641 641 HOH HOH . E 4 HOH A 42 642 642 HOH HOH . E 4 HOH A 43 643 643 HOH HOH . E 4 HOH A 44 644 644 HOH HOH . E 4 HOH A 45 645 645 HOH HOH . E 4 HOH A 46 646 646 HOH HOH . E 4 HOH A 47 647 647 HOH HOH . E 4 HOH A 48 648 648 HOH HOH . E 4 HOH A 49 649 649 HOH HOH . E 4 HOH A 50 650 650 HOH HOH . E 4 HOH A 51 651 651 HOH HOH . E 4 HOH A 52 652 652 HOH HOH . E 4 HOH A 53 653 653 HOH HOH . E 4 HOH A 54 654 654 HOH HOH . E 4 HOH A 55 655 655 HOH HOH . E 4 HOH A 56 656 656 HOH HOH . E 4 HOH A 57 657 657 HOH HOH . E 4 HOH A 58 658 658 HOH HOH . E 4 HOH A 59 659 659 HOH HOH . E 4 HOH A 60 660 660 HOH HOH . E 4 HOH A 61 661 661 HOH HOH . E 4 HOH A 62 662 662 HOH HOH . E 4 HOH A 63 663 663 HOH HOH . E 4 HOH A 64 664 664 HOH HOH . E 4 HOH A 65 665 665 HOH HOH . E 4 HOH A 66 666 666 HOH HOH . E 4 HOH A 67 667 667 HOH HOH . E 4 HOH A 68 668 668 HOH HOH . E 4 HOH A 69 669 669 HOH HOH . E 4 HOH A 70 670 670 HOH HOH . E 4 HOH A 71 671 671 HOH HOH . E 4 HOH A 72 672 672 HOH HOH . E 4 HOH A 73 673 673 HOH HOH . E 4 HOH A 74 674 674 HOH HOH . E 4 HOH A 75 675 675 HOH HOH . E 4 HOH A 76 676 676 HOH HOH . E 4 HOH A 77 677 677 HOH HOH . E 4 HOH A 78 678 678 HOH HOH . E 4 HOH A 79 679 679 HOH HOH . E 4 HOH A 80 680 680 HOH HOH . E 4 HOH A 81 681 681 HOH HOH . E 4 HOH A 82 682 682 HOH HOH . E 4 HOH A 83 683 683 HOH HOH . E 4 HOH A 84 684 684 HOH HOH . E 4 HOH A 85 685 685 HOH HOH . E 4 HOH A 86 686 686 HOH HOH . E 4 HOH A 87 687 687 HOH HOH . E 4 HOH A 88 688 688 HOH HOH . E 4 HOH A 89 689 689 HOH HOH . E 4 HOH A 90 690 690 HOH HOH . E 4 HOH A 91 691 691 HOH HOH . E 4 HOH A 92 692 692 HOH HOH . E 4 HOH A 93 693 693 HOH HOH . E 4 HOH A 94 694 694 HOH HOH . E 4 HOH A 95 695 695 HOH HOH . E 4 HOH A 96 696 696 HOH HOH . E 4 HOH A 97 697 697 HOH HOH . E 4 HOH A 98 698 698 HOH HOH . E 4 HOH A 99 699 699 HOH HOH . E 4 HOH A 100 700 700 HOH HOH . E 4 HOH A 101 701 701 HOH HOH . E 4 HOH A 102 702 702 HOH HOH . E 4 HOH A 103 703 703 HOH HOH . E 4 HOH A 104 704 704 HOH HOH . E 4 HOH A 105 705 705 HOH HOH . E 4 HOH A 106 706 706 HOH HOH . E 4 HOH A 107 707 707 HOH HOH . E 4 HOH A 108 708 708 HOH HOH . E 4 HOH A 109 709 709 HOH HOH . E 4 HOH A 110 710 710 HOH HOH . E 4 HOH A 111 711 711 HOH HOH . E 4 HOH A 112 712 712 HOH HOH . E 4 HOH A 113 713 713 HOH HOH . E 4 HOH A 114 714 714 HOH HOH . E 4 HOH A 115 715 715 HOH HOH . E 4 HOH A 116 716 716 HOH HOH . E 4 HOH A 117 717 717 HOH HOH . E 4 HOH A 118 718 718 HOH HOH . E 4 HOH A 119 719 719 HOH HOH . E 4 HOH A 120 720 720 HOH HOH . E 4 HOH A 121 721 721 HOH HOH . E 4 HOH A 122 722 722 HOH HOH . E 4 HOH A 123 723 723 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.072 _atom_site.Cartn_y 10.45 _atom_site.Cartn_z 32.541 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #