data_1D30 # _model_server_result.job_id gq8PF2DByt_ESrnCLVdQpw _model_server_result.datetime_utc '2025-04-18 01:51:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 1D30 # _exptl.entry_id 1D30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.324 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D30 _cell.length_a 25.35 _cell.length_b 40.71 _cell.length_c 66.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C16 H15 N5' _chem_comp.formula_weight 277.324 _chem_comp.id DAP _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DAP sing 39 n y N1 C8 DAP sing 40 n y N1 HN1 DAP sing 41 n n C2 C3 DAP doub 42 n y C2 C1' DAP sing 43 n y C3 C9 DAP sing 44 n y C3 H3 DAP sing 45 n n C4 C5 DAP doub 46 n y C4 C9 DAP sing 47 n y C4 H4 DAP sing 48 n n C5 C6 DAP sing 49 n y C5 H5 DAP sing 50 n n C6 C7 DAP doub 51 n y C6 C10 DAP sing 52 n n C7 C8 DAP sing 53 n y C7 H7 DAP sing 54 n n C8 C9 DAP doub 55 n y C10 N2 DAP doub 56 n n C10 N3 DAP sing 57 n n N2 HN2 DAP sing 58 n n N3 HN31 DAP sing 59 n n N3 HN32 DAP sing 60 n n C1' C2' DAP doub 61 n y C1' C6' DAP sing 62 n y C2' C3' DAP sing 63 n y C2' H2' DAP sing 64 n n C3' C4' DAP doub 65 n y C3' H3' DAP sing 66 n n C4' C5' DAP sing 67 n y C4' C11 DAP sing 68 n n C5' C6' DAP doub 69 n y C5' H5' DAP sing 70 n n C6' H6' DAP sing 71 n n C11 N4 DAP doub 72 n n C11 N5 DAP sing 73 n n N4 HN4 DAP sing 74 n n N5 HN51 DAP sing 75 n n N5 HN52 DAP sing 76 n n # _atom_sites.entry_id 1D30 _atom_sites.fract_transf_matrix[1][1] 0.039448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DAP A 1 25 25 DAP DAP . D 3 HOH A 1 26 26 HOH HOH . D 3 HOH A 2 28 28 HOH HOH . D 3 HOH A 3 30 30 HOH HOH . D 3 HOH A 4 31 31 HOH HOH . D 3 HOH A 5 32 32 HOH HOH . D 3 HOH A 6 33 33 HOH HOH . D 3 HOH A 7 35 35 HOH HOH . D 3 HOH A 8 36 36 HOH HOH . D 3 HOH A 9 37 37 HOH HOH . D 3 HOH A 10 38 38 HOH HOH . D 3 HOH A 11 39 39 HOH HOH . D 3 HOH A 12 42 42 HOH HOH . D 3 HOH A 13 43 43 HOH HOH . D 3 HOH A 14 46 46 HOH HOH . D 3 HOH A 15 47 47 HOH HOH . D 3 HOH A 16 48 48 HOH HOH . E 3 HOH B 1 27 27 HOH HOH . E 3 HOH B 2 29 29 HOH HOH . E 3 HOH B 3 34 34 HOH HOH . E 3 HOH B 4 40 40 HOH HOH . E 3 HOH B 5 41 41 HOH HOH . E 3 HOH B 6 44 44 HOH HOH . E 3 HOH B 7 45 45 HOH HOH . E 3 HOH B 8 49 49 HOH HOH . E 3 HOH B 9 50 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DAP . . . C 2 9.965 22.899 8.103 1 37.53 ? N1 DAP 25 A 1 HETATM 2 C C2 DAP . . . C 2 9.235 23.864 7.372 1 36.36 ? C2 DAP 25 A 1 HETATM 3 C C3 DAP . . . C 2 8.117 24.174 7.984 1 33.73 ? C3 DAP 25 A 1 HETATM 4 C C4 DAP . . . C 2 7.095 23.258 10.186 1 39.44 ? C4 DAP 25 A 1 HETATM 5 C C5 DAP . . . C 2 7.296 22.386 11.257 1 33.81 ? C5 DAP 25 A 1 HETATM 6 C C6 DAP . . . C 2 8.502 21.629 11.303 1 34.3 ? C6 DAP 25 A 1 HETATM 7 C C7 DAP . . . C 2 9.453 21.747 10.299 1 33.86 ? C7 DAP 25 A 1 HETATM 8 C C8 DAP . . . C 2 9.207 22.631 9.214 1 35.1 ? C8 DAP 25 A 1 HETATM 9 C C9 DAP . . . C 2 8.071 23.372 9.155 1 34.74 ? C9 DAP 25 A 1 HETATM 10 C C10 DAP . . . C 2 8.753 20.815 12.355 1 40.79 ? C10 DAP 25 A 1 HETATM 11 N N2 DAP . . . C 2 7.904 20.681 13.366 1 40.93 ? N2 DAP 25 A 1 HETATM 12 N N3 DAP . . . C 2 9.871 20.086 12.401 1 40.72 ? N3 DAP 25 A 1 HETATM 13 C C1' DAP . . . C 2 9.826 24.373 6.101 1 35.04 ? C1' DAP 25 A 1 HETATM 14 C C2' DAP . . . C 2 9.2 25.313 5.256 1 39.62 ? C2' DAP 25 A 1 HETATM 15 C C3' DAP . . . C 2 9.846 25.688 4.078 1 40.79 ? C3' DAP 25 A 1 HETATM 16 C C4' DAP . . . C 2 11.116 25.138 3.719 1 38.95 ? C4' DAP 25 A 1 HETATM 17 C C5' DAP . . . C 2 11.717 24.202 4.584 1 36.58 ? C5' DAP 25 A 1 HETATM 18 C C6' DAP . . . C 2 11.096 23.811 5.755 1 38.27 ? C6' DAP 25 A 1 HETATM 19 C C11 DAP . . . C 2 11.707 25.541 2.581 1 46.94 ? C11 DAP 25 A 1 HETATM 20 N N4 DAP . . . C 2 12.896 25.151 2.082 1 54.71 ? N4 DAP 25 A 1 HETATM 21 N N5 DAP . . . C 2 11.06 26.429 1.783 1 54.96 ? N5 DAP 25 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #