data_1D3J
#
_model_server_result.job_id            jlgif8-EJ2SRtH6YnTuq0w 
_model_server_result.datetime_utc      '2024-12-22 02:01:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d3j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":170}' 
#
_entry.id    1D3J 
#
_exptl.entry_id    1D3J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-HYDROXYETHYL DISULFIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1D3J 
_cell.length_a            61.11 
_cell.length_b            61.11 
_cell.length_c            97.33 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D3J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                HED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-HYDROXYETHYL DISULFIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 HED sing 129 n n 
C1 C2 HED sing 130 n n 
C1 H11 HED sing 131 n n 
C1 H12 HED sing 132 n n 
O1 HO1 HED sing 133 n n 
C2 S3 HED sing 134 n n 
C2 H21 HED sing 135 n n 
C2 H22 HED sing 136 n n 
S3 S4 HED sing 137 n n 
S4 C5 HED sing 138 n n 
C5 C6 HED sing 139 n n 
C5 H51 HED sing 140 n n 
C5 H52 HED sing 141 n n 
C6 O6 HED sing 142 n n 
C6 H61 HED sing 143 n n 
C6 H62 HED sing 144 n n 
O6 HO6 HED sing 145 n n 
#
_atom_sites.entry_id                     1D3J 
_atom_sites.fract_transf_matrix[1][1]    0.016364 
_atom_sites.fract_transf_matrix[1][2]    0.009448 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010274 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 173 0 CL CL . 
C 2 CL A 1 178 0 CL CL . 
D 3 HED A 1 170 0 HED HED . 
E 4 HOH A 1 171 0 HOH HOH . 
E 4 HOH A 2 172 0 HOH HOH . 
E 4 HOH A 3 174 0 HOH HOH . 
E 4 HOH A 4 175 0 HOH HOH . 
E 4 HOH A 5 176 0 HOH HOH . 
E 4 HOH A 6 177 0 HOH HOH . 
E 4 HOH A 7 179 0 HOH HOH . 
E 4 HOH A 8 180 0 HOH HOH . 
E 4 HOH A 9 181 0 HOH HOH . 
E 4 HOH A 10 182 0 HOH HOH . 
E 4 HOH A 11 183 0 HOH HOH . 
E 4 HOH A 12 184 0 HOH HOH . 
E 4 HOH A 13 185 0 HOH HOH . 
E 4 HOH A 14 186 0 HOH HOH . 
E 4 HOH A 15 187 0 HOH HOH . 
E 4 HOH A 16 188 0 HOH HOH . 
E 4 HOH A 17 189 0 HOH HOH . 
E 4 HOH A 18 190 0 HOH HOH . 
E 4 HOH A 19 191 0 HOH HOH . 
E 4 HOH A 20 192 0 HOH HOH . 
E 4 HOH A 21 193 0 HOH HOH . 
E 4 HOH A 22 194 0 HOH HOH . 
E 4 HOH A 23 195 0 HOH HOH . 
E 4 HOH A 24 196 0 HOH HOH . 
E 4 HOH A 25 197 0 HOH HOH . 
E 4 HOH A 26 198 0 HOH HOH . 
E 4 HOH A 27 200 0 HOH HOH . 
E 4 HOH A 28 201 0 HOH HOH . 
E 4 HOH A 29 202 0 HOH HOH . 
E 4 HOH A 30 203 0 HOH HOH . 
E 4 HOH A 31 204 0 HOH HOH . 
E 4 HOH A 32 206 0 HOH HOH . 
E 4 HOH A 33 207 0 HOH HOH . 
E 4 HOH A 34 208 0 HOH HOH . 
E 4 HOH A 35 209 0 HOH HOH . 
E 4 HOH A 36 210 0 HOH HOH . 
E 4 HOH A 37 211 0 HOH HOH . 
E 4 HOH A 38 212 0 HOH HOH . 
E 4 HOH A 39 213 0 HOH HOH . 
E 4 HOH A 40 214 0 HOH HOH . 
E 4 HOH A 41 215 0 HOH HOH . 
E 4 HOH A 42 216 0 HOH HOH . 
E 4 HOH A 43 217 0 HOH HOH . 
E 4 HOH A 44 218 0 HOH HOH . 
E 4 HOH A 45 219 0 HOH HOH . 
E 4 HOH A 46 220 0 HOH HOH . 
E 4 HOH A 47 221 0 HOH HOH . 
E 4 HOH A 48 223 0 HOH HOH . 
E 4 HOH A 49 224 0 HOH HOH . 
E 4 HOH A 50 225 0 HOH HOH . 
E 4 HOH A 51 226 0 HOH HOH . 
E 4 HOH A 52 228 0 HOH HOH . 
E 4 HOH A 53 229 0 HOH HOH . 
E 4 HOH A 54 230 0 HOH HOH . 
E 4 HOH A 55 231 0 HOH HOH . 
E 4 HOH A 56 232 0 HOH HOH . 
E 4 HOH A 57 233 0 HOH HOH . 
E 4 HOH A 58 235 0 HOH HOH . 
E 4 HOH A 59 237 0 HOH HOH . 
E 4 HOH A 60 238 0 HOH HOH . 
E 4 HOH A 61 239 0 HOH HOH . 
E 4 HOH A 62 240 0 HOH HOH . 
E 4 HOH A 63 242 0 HOH HOH . 
E 4 HOH A 64 244 0 HOH HOH . 
E 4 HOH A 65 245 0 HOH HOH . 
E 4 HOH A 66 246 0 HOH HOH . 
E 4 HOH A 67 249 0 HOH HOH . 
E 4 HOH A 68 250 0 HOH HOH . 
E 4 HOH A 69 251 0 HOH HOH . 
E 4 HOH A 70 253 0 HOH HOH . 
E 4 HOH A 71 254 0 HOH HOH . 
E 4 HOH A 72 256 0 HOH HOH . 
E 4 HOH A 73 257 0 HOH HOH . 
E 4 HOH A 74 259 0 HOH HOH . 
E 4 HOH A 75 261 0 HOH HOH . 
E 4 HOH A 76 262 0 HOH HOH . 
E 4 HOH A 77 265 0 HOH HOH . 
E 4 HOH A 78 266 0 HOH HOH . 
E 4 HOH A 79 267 0 HOH HOH . 
E 4 HOH A 80 268 0 HOH HOH . 
E 4 HOH A 81 269 0 HOH HOH . 
E 4 HOH A 82 270 0 HOH HOH . 
E 4 HOH A 83 271 0 HOH HOH . 
E 4 HOH A 84 272 0 HOH HOH . 
E 4 HOH A 85 273 0 HOH HOH . 
E 4 HOH A 86 274 0 HOH HOH . 
E 4 HOH A 87 277 0 HOH HOH . 
E 4 HOH A 88 278 0 HOH HOH . 
E 4 HOH A 89 279 0 HOH HOH . 
E 4 HOH A 90 281 0 HOH HOH . 
E 4 HOH A 91 282 0 HOH HOH . 
E 4 HOH A 92 283 0 HOH HOH . 
E 4 HOH A 93 285 0 HOH HOH . 
E 4 HOH A 94 286 0 HOH HOH . 
E 4 HOH A 95 288 0 HOH HOH . 
E 4 HOH A 96 289 0 HOH HOH . 
E 4 HOH A 97 291 0 HOH HOH . 
E 4 HOH A 98 294 0 HOH HOH . 
E 4 HOH A 99 295 0 HOH HOH . 
E 4 HOH A 100 296 0 HOH HOH . 
E 4 HOH A 101 298 0 HOH HOH . 
E 4 HOH A 102 299 0 HOH HOH . 
E 4 HOH A 103 300 0 HOH HOH . 
E 4 HOH A 104 301 0 HOH HOH . 
E 4 HOH A 105 302 0 HOH HOH . 
E 4 HOH A 106 303 0 HOH HOH . 
E 4 HOH A 107 306 0 HOH HOH . 
E 4 HOH A 108 308 0 HOH HOH . 
E 4 HOH A 109 309 0 HOH HOH . 
E 4 HOH A 110 311 0 HOH HOH . 
E 4 HOH A 111 312 0 HOH HOH . 
E 4 HOH A 112 314 0 HOH HOH . 
E 4 HOH A 113 319 0 HOH HOH . 
E 4 HOH A 114 321 0 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HED . . . D 3 31.819 -1.358 15.613 1 70.94 ? C1 HED 170 A 1 
HETATM 2 O O1 HED . . . D 3 33.1 -0.978 16.129 1 49.29 ? O1 HED 170 A 1 
HETATM 3 C C2 HED . . . D 3 31.758 -0.951 14.147 1 38.44 ? C2 HED 170 A 1 
HETATM 4 S S3 HED . . . D 3 33.424 -1.083 13.487 1 61.32 ? S3 HED 170 A 1 
HETATM 5 S S4 HED . . . D 3 33.367 -0.596 11.478 1 100 ? S4 HED 170 A 1 
HETATM 6 C C5 HED . . . D 3 32.816 -2.098 10.612 1 100 ? C5 HED 170 A 1 
HETATM 7 C C6 HED . . . D 3 33.949 -3.121 10.345 1 100 ? C6 HED 170 A 1 
HETATM 8 O O6 HED . . . D 3 34.589 -2.836 9.11 1 100 ? O6 HED 170 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#