data_1D3Q # _model_server_result.job_id c1Rb9nPJ4A1YwNoBf4OzCQ _model_server_result.datetime_utc '2024-12-27 02:34:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 1D3Q # _exptl.entry_id 1D3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 526.732 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHENE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.56 _cell.angle_gamma 90 _cell.entry_id 1D3Q _cell.length_a 71.15 _cell.length_b 71.73 _cell.length_c 73.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 B SG CYS 119 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 28 B CYS 64 1_555 B SG CYS 44 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 173 B CYS 209 1_555 B SG CYS 187 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 201 B CYS 237 1_555 B SG CYS 231 B CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B ND2 ASN 53 B ASN 89 1_555 D C1 NAG . B NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 C C GLU 9 H GLU 308 1_555 C N TYS 10 H TYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 C C TYS 10 H TYS 309 1_555 C N LEU 11 H LEU 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? metalc ? metalc1 B O LYS 174 B LYS 210 1_555 E NA NA . B NA 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc2 B O THR 177 B THR 213 1_555 E NA NA . B NA 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 B O PHE 215 B PHE 251 4_446 E NA NA . B NA 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc4 B O ARG 233 B ARG 269 1_555 F NA NA . B NA 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc5 B O LYS 236 B LYS 272 1_555 F NA NA . B NA 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C33 H38 N2 O2 S' _chem_comp.formula_weight 526.732 _chem_comp.id BT2 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHENE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BT2 doub 70 n y C1 C6 BT2 sing 71 n y C1 H1 BT2 sing 72 n n C2 C3 BT2 sing 73 n y C2 H2 BT2 sing 74 n n C3 C4 BT2 doub 75 n y C3 S1 BT2 sing 76 n y C4 C5 BT2 sing 77 n y C4 C9 BT2 sing 78 n y C5 C6 BT2 doub 79 n y C5 H5 BT2 sing 80 n n C6 H6 BT2 sing 81 n n S1 C8 BT2 sing 82 n y C8 C9 BT2 doub 83 n y C8 C10 BT2 sing 84 n y C9 C7 BT2 sing 85 n n C7 C13 BT2 sing 86 n n C7 H71 BT2 sing 87 n n C7 H72 BT2 sing 88 n n C10 C12 BT2 doub 89 n y C10 C20 BT2 sing 90 n y C12 C14 BT2 sing 91 n y C12 H12 BT2 sing 92 n n C14 C16 BT2 doub 93 n y C14 H14 BT2 sing 94 n n C16 C18 BT2 sing 95 n y C16 O2 BT2 sing 96 n n C18 C20 BT2 doub 97 n y C18 H18 BT2 sing 98 n n C20 H20 BT2 sing 99 n n O2 C24 BT2 sing 100 n n C24 C34 BT2 sing 101 n n C24 H241 BT2 sing 102 n n C24 H242 BT2 sing 103 n n C11 C13 BT2 doub 104 n y C11 C21 BT2 sing 105 n y C11 H11 BT2 sing 106 n n C13 C15 BT2 sing 107 n y C15 C32 BT2 doub 108 n y C15 H15 BT2 sing 109 n n C32 C19 BT2 sing 110 n y C32 H32 BT2 sing 111 n n C19 C21 BT2 doub 112 n y C19 O3 BT2 sing 113 n n C21 H21 BT2 sing 114 n n O3 C25 BT2 sing 115 n n C25 C33 BT2 sing 116 n n C25 H251 BT2 sing 117 n n C25 H252 BT2 sing 118 n n C17 C23 BT2 sing 119 n n C17 C27 BT2 sing 120 n n C17 H171 BT2 sing 121 n n C17 H172 BT2 sing 122 n n C23 C26 BT2 sing 123 n n C23 H231 BT2 sing 124 n n C23 H232 BT2 sing 125 n n C26 N2 BT2 sing 126 n n C26 H261 BT2 sing 127 n n C26 H262 BT2 sing 128 n n N2 C27 BT2 sing 129 n n N2 C33 BT2 sing 130 n n C27 H271 BT2 sing 131 n n C27 H272 BT2 sing 132 n n C22 N3 BT2 sing 133 n n C22 C30 BT2 sing 134 n n C22 H221 BT2 sing 135 n n C22 H222 BT2 sing 136 n n N3 C28 BT2 sing 137 n n N3 C34 BT2 sing 138 n n C28 C29 BT2 sing 139 n n C28 H281 BT2 sing 140 n n C28 H282 BT2 sing 141 n n C29 C30 BT2 sing 142 n n C29 H291 BT2 sing 143 n n C29 H292 BT2 sing 144 n n C30 H301 BT2 sing 145 n n C30 H302 BT2 sing 146 n n C33 H331 BT2 sing 147 n n C33 H332 BT2 sing 148 n n C34 H341 BT2 sing 149 n n C34 H342 BT2 sing 150 n n # _atom_sites.entry_id 1D3Q _atom_sites.fract_transf_matrix[1][1] 0.014055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00262 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG B 1 500 500 NAG NAG . E 5 NA B 1 398 398 NA NA . F 5 NA B 1 399 399 NA NA . G 6 BT2 B 1 400 400 BT2 BT2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BT2 . . . G 6 -24.423 -31.407 24.221 1 20 ? C1 BT2 400 B 1 HETATM 2 C C2 BT2 . . . G 6 -24.665 -32.417 23.081 1 20 ? C2 BT2 400 B 1 HETATM 3 C C3 BT2 . . . G 6 -23.679 -32.608 21.99 1 20 ? C3 BT2 400 B 1 HETATM 4 C C4 BT2 . . . G 6 -22.419 -31.841 21.937 1 20 ? C4 BT2 400 B 1 HETATM 5 C C5 BT2 . . . G 6 -22.177 -30.835 22.96 1 20 ? C5 BT2 400 B 1 HETATM 6 C C6 BT2 . . . G 6 -23.153 -30.566 24.133 1 20 ? C6 BT2 400 B 1 HETATM 7 S S1 BT2 . . . G 6 -23.647 -33.8 20.824 1 20 ? S1 BT2 400 B 1 HETATM 8 C C8 BT2 . . . G 6 -22.088 -33.452 20.154 1 20 ? C8 BT2 400 B 1 HETATM 9 C C9 BT2 . . . G 6 -21.532 -32.35 20.89 1 20 ? C9 BT2 400 B 1 HETATM 10 C C7 BT2 . . . G 6 -20.033 -31.889 20.721 1 20 ? C7 BT2 400 B 1 HETATM 11 C C10 BT2 . . . G 6 -21.426 -34.13 18.955 1 20 ? C10 BT2 400 B 1 HETATM 12 C C12 BT2 . . . G 6 -20.673 -33.405 17.861 1 20 ? C12 BT2 400 B 1 HETATM 13 C C14 BT2 . . . G 6 -19.873 -34.118 16.758 1 20 ? C14 BT2 400 B 1 HETATM 14 C C16 BT2 . . . G 6 -19.862 -35.642 16.76 1 20 ? C16 BT2 400 B 1 HETATM 15 C C18 BT2 . . . G 6 -20.6 -36.364 17.907 1 20 ? C18 BT2 400 B 1 HETATM 16 C C20 BT2 . . . G 6 -21.385 -35.592 18.953 1 20 ? C20 BT2 400 B 1 HETATM 17 O O2 BT2 . . . G 6 -19.278 -36.329 15.679 1 20 ? O2 BT2 400 B 1 HETATM 18 C C24 BT2 . . . G 6 -19.74 -37.738 15.447 1 20 ? C24 BT2 400 B 1 HETATM 19 C C11 BT2 . . . G 6 -19.082 -34.127 22 1 20 ? C11 BT2 400 B 1 HETATM 20 C C13 BT2 . . . G 6 -18.89 -32.784 21.336 1 20 ? C13 BT2 400 B 1 HETATM 21 C C15 BT2 . . . G 6 -17.442 -32.293 21.236 1 20 ? C15 BT2 400 B 1 HETATM 22 C C32 BT2 . . . G 6 -16.242 -33.129 21.723 1 20 ? C32 BT2 400 B 1 HETATM 23 C C19 BT2 . . . G 6 -16.477 -34.532 22.293 1 20 ? C19 BT2 400 B 1 HETATM 24 C C21 BT2 . . . G 6 -17.92 -34.949 22.497 1 20 ? C21 BT2 400 B 1 HETATM 25 O O3 BT2 . . . G 6 -15.451 -35.462 22.497 1 20 ? O3 BT2 400 B 1 HETATM 26 C C25 BT2 . . . G 6 -15.498 -36.317 23.687 1 20 ? C25 BT2 400 B 1 HETATM 27 C C17 BT2 . . . G 6 -13.688 -34.042 27.453 1 20 ? C17 BT2 400 B 1 HETATM 28 C C23 BT2 . . . G 6 -13.374 -33.164 26.24 1 20 ? C23 BT2 400 B 1 HETATM 29 C C26 BT2 . . . G 6 -13.544 -33.974 24.971 1 20 ? C26 BT2 400 B 1 HETATM 30 N N2 BT2 . . . G 6 -14.091 -35.305 25.495 1 20 ? N2 BT2 400 B 1 HETATM 31 C C27 BT2 . . . G 6 -14.085 -35.463 26.99 1 20 ? C27 BT2 400 B 1 HETATM 32 C C22 BT2 . . . G 6 -16.582 -39.715 14.11 1 20 ? C22 BT2 400 B 1 HETATM 33 N N3 BT2 . . . G 6 -17.519 -39.081 15.153 1 20 ? N3 BT2 400 B 1 HETATM 34 C C28 BT2 . . . G 6 -17.798 -39.978 16.355 1 20 ? C28 BT2 400 B 1 HETATM 35 C C29 BT2 . . . G 6 -17.329 -41.35 15.845 1 20 ? C29 BT2 400 B 1 HETATM 36 C C30 BT2 . . . G 6 -16.74 -41.204 14.432 1 20 ? C30 BT2 400 B 1 HETATM 37 C C33 BT2 . . . G 6 -14.186 -36.401 24.491 1 20 ? C33 BT2 400 B 1 HETATM 38 C C34 BT2 . . . G 6 -18.837 -38.619 14.571 1 20 ? C34 BT2 400 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #