data_1D4D # _model_server_result.job_id L6ZuJk_m4ixhjIMfxHR9gA _model_server_result.datetime_utc '2024-10-12 12:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 1D4D # _exptl.entry_id 1D4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4D _cell.length_a 72.863 _cell.length_b 72.863 _cell.length_c 216.469 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale2 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? covale ? covale3 A SG CYS 42 A CYS 41 1_555 E CAC HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D4D _atom_sites.fract_transf_matrix[1][1] 0.01372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEM . F 3 FAD A 1 600 600 FAD FAD . G 4 SIN A 1 700 700 SIN SIN . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 2 HOH HOH . H 5 HOH A 3 703 3 HOH HOH . H 5 HOH A 4 704 4 HOH HOH . H 5 HOH A 5 705 5 HOH HOH . H 5 HOH A 6 706 6 HOH HOH . H 5 HOH A 7 707 7 HOH HOH . H 5 HOH A 8 708 8 HOH HOH . H 5 HOH A 9 709 9 HOH HOH . H 5 HOH A 10 710 10 HOH HOH . H 5 HOH A 11 711 11 HOH HOH . H 5 HOH A 12 712 12 HOH HOH . H 5 HOH A 13 713 13 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 15 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 17 HOH HOH . H 5 HOH A 18 718 18 HOH HOH . H 5 HOH A 19 719 19 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 21 HOH HOH . H 5 HOH A 22 722 22 HOH HOH . H 5 HOH A 23 723 23 HOH HOH . H 5 HOH A 24 724 24 HOH HOH . H 5 HOH A 25 725 25 HOH HOH . H 5 HOH A 26 726 26 HOH HOH . H 5 HOH A 27 727 27 HOH HOH . H 5 HOH A 28 728 28 HOH HOH . H 5 HOH A 29 729 29 HOH HOH . H 5 HOH A 30 730 30 HOH HOH . H 5 HOH A 31 731 31 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 33 HOH HOH . H 5 HOH A 34 734 34 HOH HOH . H 5 HOH A 35 735 35 HOH HOH . H 5 HOH A 36 736 36 HOH HOH . H 5 HOH A 37 737 37 HOH HOH . H 5 HOH A 38 738 38 HOH HOH . H 5 HOH A 39 739 39 HOH HOH . H 5 HOH A 40 740 40 HOH HOH . H 5 HOH A 41 741 41 HOH HOH . H 5 HOH A 42 742 42 HOH HOH . H 5 HOH A 43 743 43 HOH HOH . H 5 HOH A 44 744 44 HOH HOH . H 5 HOH A 45 745 45 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 47 HOH HOH . H 5 HOH A 48 748 48 HOH HOH . H 5 HOH A 49 749 49 HOH HOH . H 5 HOH A 50 750 50 HOH HOH . H 5 HOH A 51 751 51 HOH HOH . H 5 HOH A 52 752 52 HOH HOH . H 5 HOH A 53 753 53 HOH HOH . H 5 HOH A 54 754 54 HOH HOH . H 5 HOH A 55 755 55 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 3 0.41 42.336 16.665 1 20.18 ? PA FAD 600 A 1 HETATM 2 O O1A FAD . . . F 3 0.475 40.889 16.451 1 18.71 ? O1A FAD 600 A 1 HETATM 3 O O2A FAD . . . F 3 1.344 43.004 17.561 1 21.88 ? O2A FAD 600 A 1 HETATM 4 O O5B FAD . . . F 3 -0.878 42.503 17.506 1 20 ? O5B FAD 600 A 1 HETATM 5 C C5B FAD . . . F 3 -2.004 41.554 17.281 1 19.12 ? C5B FAD 600 A 1 HETATM 6 C C4B FAD . . . F 3 -3.592 41.262 17.883 1 19.47 ? C4B FAD 600 A 1 HETATM 7 O O4B FAD . . . F 3 -4.744 40.642 17.321 1 19.25 ? O4B FAD 600 A 1 HETATM 8 C C3B FAD . . . F 3 -2.754 40.055 18.332 1 19.72 ? C3B FAD 600 A 1 HETATM 9 O O3B FAD . . . F 3 -2.233 40.275 19.639 1 17.64 ? O3B FAD 600 A 1 HETATM 10 C C2B FAD . . . F 3 -3.713 38.882 18.222 1 19.25 ? C2B FAD 600 A 1 HETATM 11 O O2B FAD . . . F 3 -3.596 37.874 19.19 1 18.37 ? O2B FAD 600 A 1 HETATM 12 C C1B FAD . . . F 3 -5.021 39.623 18.295 1 19.44 ? C1B FAD 600 A 1 HETATM 13 N N9A FAD . . . F 3 -5.929 38.856 17.448 1 19.88 ? N9A FAD 600 A 1 HETATM 14 C C8A FAD . . . F 3 -5.67 38.155 16.316 1 20.63 ? C8A FAD 600 A 1 HETATM 15 N N7A FAD . . . F 3 -6.779 37.68 15.782 1 22.98 ? N7A FAD 600 A 1 HETATM 16 C C5A FAD . . . F 3 -7.819 38.058 16.645 1 20.64 ? C5A FAD 600 A 1 HETATM 17 C C6A FAD . . . F 3 -9.219 37.907 16.654 1 20.61 ? C6A FAD 600 A 1 HETATM 18 N N6A FAD . . . F 3 -9.804 37.192 15.67 1 22.21 ? N6A FAD 600 A 1 HETATM 19 N N1A FAD . . . F 3 -9.876 38.476 17.656 1 19.56 ? N1A FAD 600 A 1 HETATM 20 C C2A FAD . . . F 3 -9.241 39.167 18.592 1 19.23 ? C2A FAD 600 A 1 HETATM 21 N N3A FAD . . . F 3 -7.937 39.462 18.71 1 20.49 ? N3A FAD 600 A 1 HETATM 22 C C4A FAD . . . F 3 -7.277 38.856 17.684 1 20.22 ? C4A FAD 600 A 1 HETATM 23 N N1 FAD . . . F 3 9.25 45.514 13.303 1 21.27 ? N1 FAD 600 A 1 HETATM 24 C C2 FAD . . . F 3 9.936 46.667 13.419 1 22.04 ? C2 FAD 600 A 1 HETATM 25 O O2 FAD . . . F 3 9.55 47.592 12.715 1 21.98 ? O2 FAD 600 A 1 HETATM 26 N N3 FAD . . . F 3 10.986 46.811 14.343 1 23.23 ? N3 FAD 600 A 1 HETATM 27 C C4 FAD . . . F 3 11.357 45.742 15.143 1 22.75 ? C4 FAD 600 A 1 HETATM 28 O O4 FAD . . . F 3 12.287 45.779 15.987 1 23.36 ? O4 FAD 600 A 1 HETATM 29 C C4X FAD . . . F 3 10.589 44.484 14.964 1 21.15 ? C4X FAD 600 A 1 HETATM 30 N N5 FAD . . . F 3 10.906 43.41 15.686 1 20.51 ? N5 FAD 600 A 1 HETATM 31 C C5X FAD . . . F 3 10.219 42.281 15.598 1 19.19 ? C5X FAD 600 A 1 HETATM 32 C C6 FAD . . . F 3 10.652 41.236 16.443 1 18.36 ? C6 FAD 600 A 1 HETATM 33 C C7 FAD . . . F 3 9.857 40.065 16.589 1 18.12 ? C7 FAD 600 A 1 HETATM 34 C C7M FAD . . . F 3 10.203 38.873 17.46 1 17.58 ? C7M FAD 600 A 1 HETATM 35 C C8 FAD . . . F 3 8.608 40.062 15.842 1 18.39 ? C8 FAD 600 A 1 HETATM 36 C C8M FAD . . . F 3 7.686 38.86 15.923 1 18.23 ? C8M FAD 600 A 1 HETATM 37 C C9 FAD . . . F 3 8.194 41.13 15.006 1 17.78 ? C9 FAD 600 A 1 HETATM 38 C C9A FAD . . . F 3 9 42.279 14.871 1 19.77 ? C9A FAD 600 A 1 HETATM 39 N N10 FAD . . . F 3 8.832 43.28 13.914 1 22.26 ? N10 FAD 600 A 1 HETATM 40 C C10 FAD . . . F 3 9.53 44.458 14.05 1 20.74 ? C10 FAD 600 A 1 HETATM 41 C C1' FAD . . . F 3 7.647 43.428 13.056 1 22.36 ? C1' FAD 600 A 1 HETATM 42 C C2' FAD . . . F 3 6.417 44.218 14.093 1 23.14 ? C2' FAD 600 A 1 HETATM 43 O O2' FAD . . . F 3 6.486 43.399 15.248 1 25 ? O2' FAD 600 A 1 HETATM 44 C C3' FAD . . . F 3 5.014 43.918 13.508 1 23.95 ? C3' FAD 600 A 1 HETATM 45 O O3' FAD . . . F 3 5.128 42.712 12.72 1 26.2 ? O3' FAD 600 A 1 HETATM 46 C C4' FAD . . . F 3 4.027 43.714 14.692 1 23.15 ? C4' FAD 600 A 1 HETATM 47 O O4' FAD . . . F 3 4.188 44.932 15.344 1 22.87 ? O4' FAD 600 A 1 HETATM 48 C C5' FAD . . . F 3 2.636 43.624 14.197 1 22 ? C5' FAD 600 A 1 HETATM 49 O O5' FAD . . . F 3 1.726 44.653 14.677 1 21.08 ? O5' FAD 600 A 1 HETATM 50 P P FAD . . . F 3 0.21 44.494 14.655 1 20.65 ? P FAD 600 A 1 HETATM 51 O O1P FAD . . . F 3 -0.232 44.439 13.296 1 22.35 ? O1P FAD 600 A 1 HETATM 52 O O2P FAD . . . F 3 -0.447 45.572 15.401 1 19.24 ? O2P FAD 600 A 1 HETATM 53 O O3P FAD . . . F 3 0.037 43.119 15.335 1 20.36 ? O3P FAD 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #