data_1D4D
#
_model_server_result.job_id            qghwJqMmNRlh2_sn-kN7Ig 
_model_server_result.datetime_utc      '2024-11-26 09:32:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    1D4D 
#
_exptl.entry_id    1D4D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1D4D 
_cell.length_a            72.863 
_cell.length_b            72.863 
_cell.length_c            216.469 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
covale ? covale2 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
covale ? covale3 A SG CYS 42 A CYS 41 1_555 E CAC HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 220 n n 
FE NB HEC sing 221 n n 
FE NC HEC sing 222 n n 
FE ND HEC sing 223 n n 
CHA C1A HEC doub 224 n n 
CHA C4D HEC sing 225 n n 
CHA HHA HEC sing 226 n n 
CHB C4A HEC doub 227 n n 
CHB C1B HEC sing 228 n n 
CHB HHB HEC sing 229 n n 
CHC C4B HEC doub 230 n n 
CHC C1C HEC sing 231 n n 
CHC HHC HEC sing 232 n n 
CHD C4C HEC doub 233 n n 
CHD C1D HEC sing 234 n n 
CHD HHD HEC sing 235 n n 
NA C1A HEC sing 236 n y 
NA C4A HEC sing 237 n y 
C1A C2A HEC sing 238 n y 
C2A C3A HEC doub 239 n y 
C2A CAA HEC sing 240 n n 
C3A C4A HEC sing 241 n y 
C3A CMA HEC sing 242 n n 
CMA HMA1 HEC sing 243 n n 
CMA HMA2 HEC sing 244 n n 
CMA HMA3 HEC sing 245 n n 
CAA CBA HEC sing 246 n n 
CAA HAA1 HEC sing 247 n n 
CAA HAA2 HEC sing 248 n n 
CBA CGA HEC sing 249 n n 
CBA HBA1 HEC sing 250 n n 
CBA HBA2 HEC sing 251 n n 
CGA O1A HEC doub 252 n n 
CGA O2A HEC sing 253 n n 
O2A H2A HEC sing 254 n n 
NB C1B HEC sing 255 n y 
NB C4B HEC sing 256 n y 
C1B C2B HEC doub 257 n y 
C2B C3B HEC sing 258 n y 
C2B CMB HEC sing 259 n n 
C3B C4B HEC sing 260 n y 
C3B CAB HEC doub 261 e n 
CMB HMB1 HEC sing 262 n n 
CMB HMB2 HEC sing 263 n n 
CMB HMB3 HEC sing 264 n n 
CAB CBB HEC sing 265 n n 
CAB HAB HEC sing 266 n n 
CBB HBB1 HEC sing 267 n n 
CBB HBB2 HEC sing 268 n n 
CBB HBB3 HEC sing 269 n n 
NC C1C HEC sing 270 n y 
NC C4C HEC sing 271 n y 
C1C C2C HEC doub 272 n y 
C2C C3C HEC sing 273 n y 
C2C CMC HEC sing 274 n n 
C3C C4C HEC sing 275 n y 
C3C CAC HEC doub 276 e n 
CMC HMC1 HEC sing 277 n n 
CMC HMC2 HEC sing 278 n n 
CMC HMC3 HEC sing 279 n n 
CAC CBC HEC sing 280 n n 
CAC HAC HEC sing 281 n n 
CBC HBC1 HEC sing 282 n n 
CBC HBC2 HEC sing 283 n n 
CBC HBC3 HEC sing 284 n n 
ND C1D HEC sing 285 n y 
ND C4D HEC sing 286 n y 
C1D C2D HEC doub 287 n y 
C2D C3D HEC sing 288 n y 
C2D CMD HEC sing 289 n n 
C3D C4D HEC doub 290 n y 
C3D CAD HEC sing 291 n n 
CMD HMD1 HEC sing 292 n n 
CMD HMD2 HEC sing 293 n n 
CMD HMD3 HEC sing 294 n n 
CAD CBD HEC sing 295 n n 
CAD HAD1 HEC sing 296 n n 
CAD HAD2 HEC sing 297 n n 
CBD CGD HEC sing 298 n n 
CBD HBD1 HEC sing 299 n n 
CBD HBD2 HEC sing 300 n n 
CGD O1D HEC doub 301 n n 
CGD O2D HEC sing 302 n n 
O2D H2D HEC sing 303 n n 
#
_atom_sites.entry_id                     1D4D 
_atom_sites.fract_transf_matrix[1][1]    0.01372 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00462 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 601 601 HEC HEM . 
C 2 HEC A 1 602 602 HEC HEM . 
D 2 HEC A 1 603 603 HEC HEM . 
E 2 HEC A 1 604 604 HEC HEM . 
F 3 FAD A 1 600 600 FAD FAD . 
G 4 SIN A 1 700 700 SIN SIN . 
H 5 HOH A 1 701 1 HOH HOH . 
H 5 HOH A 2 702 2 HOH HOH . 
H 5 HOH A 3 703 3 HOH HOH . 
H 5 HOH A 4 704 4 HOH HOH . 
H 5 HOH A 5 705 5 HOH HOH . 
H 5 HOH A 6 706 6 HOH HOH . 
H 5 HOH A 7 707 7 HOH HOH . 
H 5 HOH A 8 708 8 HOH HOH . 
H 5 HOH A 9 709 9 HOH HOH . 
H 5 HOH A 10 710 10 HOH HOH . 
H 5 HOH A 11 711 11 HOH HOH . 
H 5 HOH A 12 712 12 HOH HOH . 
H 5 HOH A 13 713 13 HOH HOH . 
H 5 HOH A 14 714 14 HOH HOH . 
H 5 HOH A 15 715 15 HOH HOH . 
H 5 HOH A 16 716 16 HOH HOH . 
H 5 HOH A 17 717 17 HOH HOH . 
H 5 HOH A 18 718 18 HOH HOH . 
H 5 HOH A 19 719 19 HOH HOH . 
H 5 HOH A 20 720 20 HOH HOH . 
H 5 HOH A 21 721 21 HOH HOH . 
H 5 HOH A 22 722 22 HOH HOH . 
H 5 HOH A 23 723 23 HOH HOH . 
H 5 HOH A 24 724 24 HOH HOH . 
H 5 HOH A 25 725 25 HOH HOH . 
H 5 HOH A 26 726 26 HOH HOH . 
H 5 HOH A 27 727 27 HOH HOH . 
H 5 HOH A 28 728 28 HOH HOH . 
H 5 HOH A 29 729 29 HOH HOH . 
H 5 HOH A 30 730 30 HOH HOH . 
H 5 HOH A 31 731 31 HOH HOH . 
H 5 HOH A 32 732 32 HOH HOH . 
H 5 HOH A 33 733 33 HOH HOH . 
H 5 HOH A 34 734 34 HOH HOH . 
H 5 HOH A 35 735 35 HOH HOH . 
H 5 HOH A 36 736 36 HOH HOH . 
H 5 HOH A 37 737 37 HOH HOH . 
H 5 HOH A 38 738 38 HOH HOH . 
H 5 HOH A 39 739 39 HOH HOH . 
H 5 HOH A 40 740 40 HOH HOH . 
H 5 HOH A 41 741 41 HOH HOH . 
H 5 HOH A 42 742 42 HOH HOH . 
H 5 HOH A 43 743 43 HOH HOH . 
H 5 HOH A 44 744 44 HOH HOH . 
H 5 HOH A 45 745 45 HOH HOH . 
H 5 HOH A 46 746 46 HOH HOH . 
H 5 HOH A 47 747 47 HOH HOH . 
H 5 HOH A 48 748 48 HOH HOH . 
H 5 HOH A 49 749 49 HOH HOH . 
H 5 HOH A 50 750 50 HOH HOH . 
H 5 HOH A 51 751 51 HOH HOH . 
H 5 HOH A 52 752 52 HOH HOH . 
H 5 HOH A 53 753 53 HOH HOH . 
H 5 HOH A 54 754 54 HOH HOH . 
H 5 HOH A 55 755 55 HOH HOH . 
H 5 HOH A 56 756 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . C 2 2 32.947 40.035 1 22.92 ? FE HEC 602 A 1 
HETATM 2 C CHA HEC . . . C 2 3.832 30.81 41.865 1 24.02 ? CHA HEC 602 A 1 
HETATM 3 C CHB HEC . . . C 2 -0.055 33.53 42.705 1 21.15 ? CHB HEC 602 A 1 
HETATM 4 C CHC HEC . . . C 2 0.638 35.61 38.385 1 21.42 ? CHC HEC 602 A 1 
HETATM 5 C CHD HEC . . . C 2 3.243 31.711 37.134 1 24.18 ? CHD HEC 602 A 1 
HETATM 6 N NA HEC . . . C 2 1.918 32.289 41.93 1 23.31 ? NA HEC 602 A 1 
HETATM 7 C C1A HEC . . . C 2 2.802 31.411 42.551 1 22.92 ? C1A HEC 602 A 1 
HETATM 8 C C2A HEC . . . C 2 2.419 31.245 43.923 1 22.88 ? C2A HEC 602 A 1 
HETATM 9 C C3A HEC . . . C 2 1.343 32.002 44.153 1 22.06 ? C3A HEC 602 A 1 
HETATM 10 C C4A HEC . . . C 2 1.011 32.669 42.915 1 22.66 ? C4A HEC 602 A 1 
HETATM 11 C CMA HEC . . . C 2 0.553 32.164 45.479 1 21.07 ? CMA HEC 602 A 1 
HETATM 12 C CAA HEC . . . C 2 3.177 30.362 44.97 1 22.88 ? CAA HEC 602 A 1 
HETATM 13 C CBA HEC . . . C 2 4.513 31.016 45.348 1 23.29 ? CBA HEC 602 A 1 
HETATM 14 C CGA HEC . . . C 2 4.413 32.252 46.193 1 26.27 ? CGA HEC 602 A 1 
HETATM 15 O O1A HEC . . . C 2 5.375 33.07 46.156 1 28.42 ? O1A HEC 602 A 1 
HETATM 16 O O2A HEC . . . C 2 3.412 32.428 46.937 1 27.09 ? O2A HEC 602 A 1 
HETATM 17 N NB HEC . . . C 2 0.527 34.27 40.43 1 22.78 ? NB HEC 602 A 1 
HETATM 18 C C1B HEC . . . C 2 -0.137 34.397 41.633 1 21.93 ? C1B HEC 602 A 1 
HETATM 19 C C2B HEC . . . C 2 -0.934 35.609 41.598 1 21.59 ? C2B HEC 602 A 1 
HETATM 20 C C3B HEC . . . C 2 -0.696 36.197 40.426 1 22.25 ? C3B HEC 602 A 1 
HETATM 21 C C4B HEC . . . C 2 0.204 35.372 39.657 1 21.81 ? C4B HEC 602 A 1 
HETATM 22 C CMB HEC . . . C 2 -1.78 36.098 42.779 1 20.19 ? CMB HEC 602 A 1 
HETATM 23 C CAB HEC . . . C 2 -1.347 37.552 39.96 1 20.88 ? CAB HEC 602 A 1 
HETATM 24 C CBB HEC . . . C 2 -0.713 38.671 40.393 1 19.75 ? CBB HEC 602 A 1 
HETATM 25 N NC HEC . . . C 2 1.935 33.532 38.122 1 23.34 ? NC HEC 602 A 1 
HETATM 26 C C1C HEC . . . C 2 1.33 34.679 37.638 1 22.8 ? C1C HEC 602 A 1 
HETATM 27 C C2C HEC . . . C 2 1.598 34.772 36.215 1 23.21 ? C2C HEC 602 A 1 
HETATM 28 C C3C HEC . . . C 2 2.347 33.709 35.875 1 23.43 ? C3C HEC 602 A 1 
HETATM 29 C C4C HEC . . . C 2 2.54 32.895 37.046 1 24.37 ? C4C HEC 602 A 1 
HETATM 30 C CMC HEC . . . C 2 1.107 35.951 35.347 1 21.74 ? CMC HEC 602 A 1 
HETATM 31 C CAC HEC . . . C 2 2.861 33.351 34.438 1 23.34 ? CAC HEC 602 A 1 
HETATM 32 C CBC HEC . . . C 2 3.727 34.254 33.87 1 20.2 ? CBC HEC 602 A 1 
HETATM 33 N ND HEC . . . C 2 3.282 31.522 39.566 1 25 ? ND HEC 602 A 1 
HETATM 34 C C1D HEC . . . C 2 3.714 31.162 38.306 1 24.7 ? C1D HEC 602 A 1 
HETATM 35 C C2D HEC . . . C 2 4.714 30.126 38.444 1 25.81 ? C2D HEC 602 A 1 
HETATM 36 C C3D HEC . . . C 2 4.877 29.874 39.754 1 27.18 ? C3D HEC 602 A 1 
HETATM 37 C C4D HEC . . . C 2 3.967 30.741 40.487 1 25.81 ? C4D HEC 602 A 1 
HETATM 38 C CMD HEC . . . C 2 5.403 29.478 37.236 1 23.79 ? CMD HEC 602 A 1 
HETATM 39 C CAD HEC . . . C 2 5.772 28.854 40.481 1 28.57 ? CAD HEC 602 A 1 
HETATM 40 C CBD HEC . . . C 2 7.181 28.56 40.04 1 32.3 ? CBD HEC 602 A 1 
HETATM 41 C CGD HEC . . . C 2 8.23 29.558 40.415 1 36.68 ? CGD HEC 602 A 1 
HETATM 42 O O1D HEC . . . C 2 9.419 29.136 40.26 1 40.04 ? O1D HEC 602 A 1 
HETATM 43 O O2D HEC . . . C 2 7.866 30.699 40.832 1 39.06 ? O2D HEC 602 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#