data_1D4D # _model_server_result.job_id 6rMsd_1qSPtcWyPg425DYA _model_server_result.datetime_utc '2024-10-12 12:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 1D4D # _exptl.entry_id 1D4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4D _cell.length_a 72.863 _cell.length_b 72.863 _cell.length_c 216.469 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale2 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? covale ? covale3 A SG CYS 42 A CYS 41 1_555 E CAC HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D4D _atom_sites.fract_transf_matrix[1][1] 0.01372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEM . F 3 FAD A 1 600 600 FAD FAD . G 4 SIN A 1 700 700 SIN SIN . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 2 HOH HOH . H 5 HOH A 3 703 3 HOH HOH . H 5 HOH A 4 704 4 HOH HOH . H 5 HOH A 5 705 5 HOH HOH . H 5 HOH A 6 706 6 HOH HOH . H 5 HOH A 7 707 7 HOH HOH . H 5 HOH A 8 708 8 HOH HOH . H 5 HOH A 9 709 9 HOH HOH . H 5 HOH A 10 710 10 HOH HOH . H 5 HOH A 11 711 11 HOH HOH . H 5 HOH A 12 712 12 HOH HOH . H 5 HOH A 13 713 13 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 15 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 17 HOH HOH . H 5 HOH A 18 718 18 HOH HOH . H 5 HOH A 19 719 19 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 21 HOH HOH . H 5 HOH A 22 722 22 HOH HOH . H 5 HOH A 23 723 23 HOH HOH . H 5 HOH A 24 724 24 HOH HOH . H 5 HOH A 25 725 25 HOH HOH . H 5 HOH A 26 726 26 HOH HOH . H 5 HOH A 27 727 27 HOH HOH . H 5 HOH A 28 728 28 HOH HOH . H 5 HOH A 29 729 29 HOH HOH . H 5 HOH A 30 730 30 HOH HOH . H 5 HOH A 31 731 31 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 33 HOH HOH . H 5 HOH A 34 734 34 HOH HOH . H 5 HOH A 35 735 35 HOH HOH . H 5 HOH A 36 736 36 HOH HOH . H 5 HOH A 37 737 37 HOH HOH . H 5 HOH A 38 738 38 HOH HOH . H 5 HOH A 39 739 39 HOH HOH . H 5 HOH A 40 740 40 HOH HOH . H 5 HOH A 41 741 41 HOH HOH . H 5 HOH A 42 742 42 HOH HOH . H 5 HOH A 43 743 43 HOH HOH . H 5 HOH A 44 744 44 HOH HOH . H 5 HOH A 45 745 45 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 47 HOH HOH . H 5 HOH A 48 748 48 HOH HOH . H 5 HOH A 49 749 49 HOH HOH . H 5 HOH A 50 750 50 HOH HOH . H 5 HOH A 51 751 51 HOH HOH . H 5 HOH A 52 752 52 HOH HOH . H 5 HOH A 53 753 53 HOH HOH . H 5 HOH A 54 754 54 HOH HOH . H 5 HOH A 55 755 55 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 -14.444 28.637 38.639 1 47.69 ? FE HEC 603 A 1 HETATM 2 C CHA HEC . . . D 2 -14.223 29.631 35.421 1 51.55 ? CHA HEC 603 A 1 HETATM 3 C CHB HEC . . . D 2 -17.665 27.628 38.15 1 53.64 ? CHB HEC 603 A 1 HETATM 4 C CHC HEC . . . D 2 -14.517 27.228 41.798 1 50.13 ? CHC HEC 603 A 1 HETATM 5 C CHD HEC . . . D 2 -11.457 30.068 39.351 1 47.98 ? CHD HEC 603 A 1 HETATM 6 N NA HEC . . . D 2 -15.728 28.762 37.097 1 52.46 ? NA HEC 603 A 1 HETATM 7 C C1A HEC . . . D 2 -15.378 28.956 35.773 1 52.8 ? C1A HEC 603 A 1 HETATM 8 C C2A HEC . . . D 2 -16.349 28.324 34.92 1 55.15 ? C2A HEC 603 A 1 HETATM 9 C C3A HEC . . . D 2 -17.284 27.78 35.705 1 55.05 ? C3A HEC 603 A 1 HETATM 10 C C4A HEC . . . D 2 -16.924 28.054 37.072 1 54.07 ? C4A HEC 603 A 1 HETATM 11 C CMA HEC . . . D 2 -18.569 26.983 35.389 1 55.03 ? CMA HEC 603 A 1 HETATM 12 C CAA HEC . . . D 2 -16.322 28.28 33.368 1 57.44 ? CAA HEC 603 A 1 HETATM 13 C CBA HEC . . . D 2 -15.909 26.953 32.712 1 59.92 ? CBA HEC 603 A 1 HETATM 14 C CGA HEC . . . D 2 -14.934 27.131 31.567 1 63.29 ? CGA HEC 603 A 1 HETATM 15 O O1A HEC . . . D 2 -15.408 27.469 30.432 1 64.28 ? O1A HEC 603 A 1 HETATM 16 O O2A HEC . . . D 2 -13.7 26.95 31.818 1 64.33 ? O2A HEC 603 A 1 HETATM 17 N NB HEC . . . D 2 -15.801 27.639 39.738 1 51.93 ? NB HEC 603 A 1 HETATM 18 C C1B HEC . . . D 2 -17.084 27.299 39.352 1 52.92 ? C1B HEC 603 A 1 HETATM 19 C C2B HEC . . . D 2 -17.734 26.545 40.404 1 53.75 ? C2B HEC 603 A 1 HETATM 20 C C3B HEC . . . D 2 -16.853 26.427 41.408 1 54.12 ? C3B HEC 603 A 1 HETATM 21 C C4B HEC . . . D 2 -15.648 27.13 41.026 1 52.56 ? C4B HEC 603 A 1 HETATM 22 C CMB HEC . . . D 2 -19.171 25.994 40.299 1 53 ? CMB HEC 603 A 1 HETATM 23 C CAB HEC . . . D 2 -17.12 25.716 42.778 1 55.59 ? CAB HEC 603 A 1 HETATM 24 C CBB HEC . . . D 2 -16.726 24.432 42.926 1 54.77 ? CBB HEC 603 A 1 HETATM 25 N NC HEC . . . D 2 -13.209 28.609 40.229 1 48.52 ? NC HEC 603 A 1 HETATM 26 C C1C HEC . . . D 2 -13.451 28.033 41.463 1 48.02 ? C1C HEC 603 A 1 HETATM 27 C C2C HEC . . . D 2 -12.412 28.438 42.389 1 47.48 ? C2C HEC 603 A 1 HETATM 28 C C3C HEC . . . D 2 -11.559 29.206 41.715 1 46.47 ? C3C HEC 603 A 1 HETATM 29 C C4C HEC . . . D 2 -12.05 29.354 40.369 1 47.38 ? C4C HEC 603 A 1 HETATM 30 C CMC HEC . . . D 2 -12.356 28.009 43.872 1 47.45 ? CMC HEC 603 A 1 HETATM 31 C CAC HEC . . . D 2 -10.283 29.907 42.273 1 42.48 ? CAC HEC 603 A 1 HETATM 32 C CBC HEC . . . D 2 -9.226 29.099 42.546 1 42.37 ? CBC HEC 603 A 1 HETATM 33 N ND HEC . . . D 2 -13.1 29.69 37.589 1 49.29 ? ND HEC 603 A 1 HETATM 34 C C1D HEC . . . D 2 -11.861 30.121 38.029 1 48.11 ? C1D HEC 603 A 1 HETATM 35 C C2D HEC . . . D 2 -11.097 30.594 36.908 1 47.35 ? C2D HEC 603 A 1 HETATM 36 C C3D HEC . . . D 2 -11.866 30.475 35.818 1 48.35 ? C3D HEC 603 A 1 HETATM 37 C C4D HEC . . . D 2 -13.134 29.924 36.223 1 49.01 ? C4D HEC 603 A 1 HETATM 38 C CMD HEC . . . D 2 -9.659 31.13 37.009 1 45.7 ? CMD HEC 603 A 1 HETATM 39 C CAD HEC . . . D 2 -11.532 30.839 34.346 1 46.84 ? CAD HEC 603 A 1 HETATM 40 C CBD HEC . . . D 2 -11.107 29.712 33.42 1 45.04 ? CBD HEC 603 A 1 HETATM 41 C CGD HEC . . . D 2 -10.175 28.693 33.999 1 44.75 ? CGD HEC 603 A 1 HETATM 42 O O1D HEC . . . D 2 -10.528 27.488 33.947 1 45.33 ? O1D HEC 603 A 1 HETATM 43 O O2D HEC . . . D 2 -9.1 29.097 34.502 1 44.99 ? O2D HEC 603 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #