data_1D4D # _model_server_result.job_id zSe74RhbcUiHlJ3t8ZWJEw _model_server_result.datetime_utc '2024-10-12 12:20:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 1D4D # _exptl.entry_id 1D4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4D _cell.length_a 72.863 _cell.length_b 72.863 _cell.length_c 216.469 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale2 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? covale ? covale3 A SG CYS 42 A CYS 41 1_555 E CAC HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D4D _atom_sites.fract_transf_matrix[1][1] 0.01372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEM . F 3 FAD A 1 600 600 FAD FAD . G 4 SIN A 1 700 700 SIN SIN . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 2 HOH HOH . H 5 HOH A 3 703 3 HOH HOH . H 5 HOH A 4 704 4 HOH HOH . H 5 HOH A 5 705 5 HOH HOH . H 5 HOH A 6 706 6 HOH HOH . H 5 HOH A 7 707 7 HOH HOH . H 5 HOH A 8 708 8 HOH HOH . H 5 HOH A 9 709 9 HOH HOH . H 5 HOH A 10 710 10 HOH HOH . H 5 HOH A 11 711 11 HOH HOH . H 5 HOH A 12 712 12 HOH HOH . H 5 HOH A 13 713 13 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 15 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 17 HOH HOH . H 5 HOH A 18 718 18 HOH HOH . H 5 HOH A 19 719 19 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 21 HOH HOH . H 5 HOH A 22 722 22 HOH HOH . H 5 HOH A 23 723 23 HOH HOH . H 5 HOH A 24 724 24 HOH HOH . H 5 HOH A 25 725 25 HOH HOH . H 5 HOH A 26 726 26 HOH HOH . H 5 HOH A 27 727 27 HOH HOH . H 5 HOH A 28 728 28 HOH HOH . H 5 HOH A 29 729 29 HOH HOH . H 5 HOH A 30 730 30 HOH HOH . H 5 HOH A 31 731 31 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 33 HOH HOH . H 5 HOH A 34 734 34 HOH HOH . H 5 HOH A 35 735 35 HOH HOH . H 5 HOH A 36 736 36 HOH HOH . H 5 HOH A 37 737 37 HOH HOH . H 5 HOH A 38 738 38 HOH HOH . H 5 HOH A 39 739 39 HOH HOH . H 5 HOH A 40 740 40 HOH HOH . H 5 HOH A 41 741 41 HOH HOH . H 5 HOH A 42 742 42 HOH HOH . H 5 HOH A 43 743 43 HOH HOH . H 5 HOH A 44 744 44 HOH HOH . H 5 HOH A 45 745 45 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 47 HOH HOH . H 5 HOH A 48 748 48 HOH HOH . H 5 HOH A 49 749 49 HOH HOH . H 5 HOH A 50 750 50 HOH HOH . H 5 HOH A 51 751 51 HOH HOH . H 5 HOH A 52 752 52 HOH HOH . H 5 HOH A 53 753 53 HOH HOH . H 5 HOH A 54 754 54 HOH HOH . H 5 HOH A 55 755 55 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 2 -4.667 30.772 46.33 1 28.24 ? FE HEC 604 A 1 HETATM 2 C CHA HEC . . . E 2 -2.677 28.33 47.554 1 32.35 ? CHA HEC 604 A 1 HETATM 3 C CHB HEC . . . E 2 -2.987 30.792 43.388 1 31.57 ? CHB HEC 604 A 1 HETATM 4 C CHC HEC . . . E 2 -7.089 32.716 44.971 1 29.09 ? CHC HEC 604 A 1 HETATM 5 C CHD HEC . . . E 2 -5.718 31.509 49.472 1 30.7 ? CHD HEC 604 A 1 HETATM 6 N NA HEC . . . E 2 -3.148 29.747 45.587 1 31.4 ? NA HEC 604 A 1 HETATM 7 C C1A HEC . . . E 2 -2.423 28.801 46.278 1 33.03 ? C1A HEC 604 A 1 HETATM 8 C C2A HEC . . . E 2 -1.31 28.387 45.428 1 34.27 ? C2A HEC 604 A 1 HETATM 9 C C3A HEC . . . E 2 -1.373 29.079 44.3 1 32.37 ? C3A HEC 604 A 1 HETATM 10 C C4A HEC . . . E 2 -2.537 29.929 44.371 1 31.67 ? C4A HEC 604 A 1 HETATM 11 C CMA HEC . . . E 2 -0.443 29.017 43.069 1 31.83 ? CMA HEC 604 A 1 HETATM 12 C CAA HEC . . . E 2 -0.297 27.399 45.964 1 36.6 ? CAA HEC 604 A 1 HETATM 13 C CBA HEC . . . E 2 0.229 26.087 45.486 1 40.66 ? CBA HEC 604 A 1 HETATM 14 C CGA HEC . . . E 2 1.35 25.703 46.447 1 43.15 ? CGA HEC 604 A 1 HETATM 15 O O1A HEC . . . E 2 2.49 26.04 46.033 1 45.22 ? O1A HEC 604 A 1 HETATM 16 O O2A HEC . . . E 2 1.041 25.173 47.544 1 44.97 ? O2A HEC 604 A 1 HETATM 17 N NB HEC . . . E 2 -4.982 31.616 44.512 1 30.36 ? NB HEC 604 A 1 HETATM 18 C C1B HEC . . . E 2 -4.187 31.455 43.395 1 30.19 ? C1B HEC 604 A 1 HETATM 19 C C2B HEC . . . E 2 -4.828 32.089 42.272 1 30.83 ? C2B HEC 604 A 1 HETATM 20 C C3B HEC . . . E 2 -5.975 32.617 42.704 1 29.74 ? C3B HEC 604 A 1 HETATM 21 C C4B HEC . . . E 2 -6.082 32.362 44.105 1 28.7 ? C4B HEC 604 A 1 HETATM 22 C CMB HEC . . . E 2 -4.227 32.112 40.849 1 31.92 ? CMB HEC 604 A 1 HETATM 23 C CAB HEC . . . E 2 -7.003 33.398 41.826 1 28.87 ? CAB HEC 604 A 1 HETATM 24 C CBB HEC . . . E 2 -7.843 32.585 41.114 1 29.98 ? CBB HEC 604 A 1 HETATM 25 N NC HEC . . . E 2 -6.141 31.87 47.084 1 28.64 ? NC HEC 604 A 1 HETATM 26 C C1C HEC . . . E 2 -7.017 32.639 46.357 1 28.24 ? C1C HEC 604 A 1 HETATM 27 C C2C HEC . . . E 2 -7.848 33.363 47.292 1 28.82 ? C2C HEC 604 A 1 HETATM 28 C C3C HEC . . . E 2 -7.475 33.023 48.526 1 28.68 ? C3C HEC 604 A 1 HETATM 29 C C4C HEC . . . E 2 -6.385 32.103 48.425 1 29.43 ? C4C HEC 604 A 1 HETATM 30 C CMC HEC . . . E 2 -8.957 34.341 46.833 1 29.28 ? CMC HEC 604 A 1 HETATM 31 C CAC HEC . . . E 2 -8.071 33.593 49.844 1 29 ? CAC HEC 604 A 1 HETATM 32 C CBC HEC . . . E 2 -9.319 33.267 50.265 1 28.88 ? CBC HEC 604 A 1 HETATM 33 N ND HEC . . . E 2 -4.281 30.052 48.188 1 31.76 ? ND HEC 604 A 1 HETATM 34 C C1D HEC . . . E 2 -4.798 30.486 49.376 1 30.28 ? C1D HEC 604 A 1 HETATM 35 C C2D HEC . . . E 2 -4.228 29.727 50.47 1 31.72 ? C2D HEC 604 A 1 HETATM 36 C C3D HEC . . . E 2 -3.366 28.844 49.965 1 32.58 ? C3D HEC 604 A 1 HETATM 37 C C4D HEC . . . E 2 -3.394 29.029 48.515 1 32.58 ? C4D HEC 604 A 1 HETATM 38 C CMD HEC . . . E 2 -4.619 29.978 51.952 1 30.18 ? CMD HEC 604 A 1 HETATM 39 C CAD HEC . . . E 2 -2.579 27.774 50.683 1 33.21 ? CAD HEC 604 A 1 HETATM 40 C CBD HEC . . . E 2 -1.168 27.609 51.146 1 37.6 ? CBD HEC 604 A 1 HETATM 41 C CGD HEC . . . E 2 -0.839 26.202 51.629 1 39.96 ? CGD HEC 604 A 1 HETATM 42 O O1D HEC . . . E 2 0.379 25.921 51.79 1 41.96 ? O1D HEC 604 A 1 HETATM 43 O O2D HEC . . . E 2 -1.806 25.405 51.806 1 41.06 ? O2D HEC 604 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #