data_1D4D
#
_model_server_result.job_id            23FOMZPBXOyvOoSitMiljw 
_model_server_result.datetime_utc      '2024-10-12 12:20:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":700}' 
#
_entry.id    1D4D 
#
_exptl.entry_id    1D4D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1D4D 
_cell.length_a            72.863 
_cell.length_b            72.863 
_cell.length_c            216.469 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
covale ? covale2 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
covale ? covale3 A SG CYS 42 A CYS 41 1_555 E CAC HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1D4D 
_atom_sites.fract_transf_matrix[1][1]    0.01372 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00462 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 601 601 HEC HEM . 
C 2 HEC A 1 602 602 HEC HEM . 
D 2 HEC A 1 603 603 HEC HEM . 
E 2 HEC A 1 604 604 HEC HEM . 
F 3 FAD A 1 600 600 FAD FAD . 
G 4 SIN A 1 700 700 SIN SIN . 
H 5 HOH A 1 701 1 HOH HOH . 
H 5 HOH A 2 702 2 HOH HOH . 
H 5 HOH A 3 703 3 HOH HOH . 
H 5 HOH A 4 704 4 HOH HOH . 
H 5 HOH A 5 705 5 HOH HOH . 
H 5 HOH A 6 706 6 HOH HOH . 
H 5 HOH A 7 707 7 HOH HOH . 
H 5 HOH A 8 708 8 HOH HOH . 
H 5 HOH A 9 709 9 HOH HOH . 
H 5 HOH A 10 710 10 HOH HOH . 
H 5 HOH A 11 711 11 HOH HOH . 
H 5 HOH A 12 712 12 HOH HOH . 
H 5 HOH A 13 713 13 HOH HOH . 
H 5 HOH A 14 714 14 HOH HOH . 
H 5 HOH A 15 715 15 HOH HOH . 
H 5 HOH A 16 716 16 HOH HOH . 
H 5 HOH A 17 717 17 HOH HOH . 
H 5 HOH A 18 718 18 HOH HOH . 
H 5 HOH A 19 719 19 HOH HOH . 
H 5 HOH A 20 720 20 HOH HOH . 
H 5 HOH A 21 721 21 HOH HOH . 
H 5 HOH A 22 722 22 HOH HOH . 
H 5 HOH A 23 723 23 HOH HOH . 
H 5 HOH A 24 724 24 HOH HOH . 
H 5 HOH A 25 725 25 HOH HOH . 
H 5 HOH A 26 726 26 HOH HOH . 
H 5 HOH A 27 727 27 HOH HOH . 
H 5 HOH A 28 728 28 HOH HOH . 
H 5 HOH A 29 729 29 HOH HOH . 
H 5 HOH A 30 730 30 HOH HOH . 
H 5 HOH A 31 731 31 HOH HOH . 
H 5 HOH A 32 732 32 HOH HOH . 
H 5 HOH A 33 733 33 HOH HOH . 
H 5 HOH A 34 734 34 HOH HOH . 
H 5 HOH A 35 735 35 HOH HOH . 
H 5 HOH A 36 736 36 HOH HOH . 
H 5 HOH A 37 737 37 HOH HOH . 
H 5 HOH A 38 738 38 HOH HOH . 
H 5 HOH A 39 739 39 HOH HOH . 
H 5 HOH A 40 740 40 HOH HOH . 
H 5 HOH A 41 741 41 HOH HOH . 
H 5 HOH A 42 742 42 HOH HOH . 
H 5 HOH A 43 743 43 HOH HOH . 
H 5 HOH A 44 744 44 HOH HOH . 
H 5 HOH A 45 745 45 HOH HOH . 
H 5 HOH A 46 746 46 HOH HOH . 
H 5 HOH A 47 747 47 HOH HOH . 
H 5 HOH A 48 748 48 HOH HOH . 
H 5 HOH A 49 749 49 HOH HOH . 
H 5 HOH A 50 750 50 HOH HOH . 
H 5 HOH A 51 751 51 HOH HOH . 
H 5 HOH A 52 752 52 HOH HOH . 
H 5 HOH A 53 753 53 HOH HOH . 
H 5 HOH A 54 754 54 HOH HOH . 
H 5 HOH A 55 755 55 HOH HOH . 
H 5 HOH A 56 756 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . G 4 12.139 43.794 12.114 1 34.3 ? C1 SIN 700 A 1 
HETATM 2 O O1 SIN . . . G 4 11.753 44.993 11.892 1 34.78 ? O1 SIN 700 A 1 
HETATM 3 O O2 SIN . . . G 4 11.437 42.711 11.998 1 34.79 ? O2 SIN 700 A 1 
HETATM 4 C C2 SIN . . . G 4 13.572 43.654 12.604 1 34.44 ? C2 SIN 700 A 1 
HETATM 5 C C3 SIN . . . G 4 13.885 42.999 13.934 1 34.94 ? C3 SIN 700 A 1 
HETATM 6 C C4 SIN . . . G 4 15.293 42.75 14.517 1 36.45 ? C4 SIN 700 A 1 
HETATM 7 O O3 SIN . . . G 4 15.975 41.798 13.965 1 36.68 ? O3 SIN 700 A 1 
HETATM 8 O O4 SIN . . . G 4 15.69 43.491 15.494 1 36.78 ? O4 SIN 700 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#