data_1D4E # _model_server_result.job_id Xeu7MWl4YM1tGljqZnpGVg _model_server_result.datetime_utc '2024-11-29 16:19:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 1D4E # _exptl.entry_id 1D4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4E _cell.length_a 73.08 _cell.length_b 73.08 _cell.length_c 216.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 16 A CYS 15 1_555 D CAB HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale2 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale3 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1D4E _atom_sites.fract_transf_matrix[1][1] 0.01368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEM . F 3 FAD A 1 600 600 FAD FAD . G 4 FUM A 1 700 700 FUM FUM . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 2 HOH HOH . H 5 HOH A 3 703 3 HOH HOH . H 5 HOH A 4 704 4 HOH HOH . H 5 HOH A 5 705 5 HOH HOH . H 5 HOH A 6 706 6 HOH HOH . H 5 HOH A 7 707 7 HOH HOH . H 5 HOH A 8 708 8 HOH HOH . H 5 HOH A 9 709 9 HOH HOH . H 5 HOH A 10 710 10 HOH HOH . H 5 HOH A 11 711 11 HOH HOH . H 5 HOH A 12 712 12 HOH HOH . H 5 HOH A 13 713 13 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 15 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 17 HOH HOH . H 5 HOH A 18 718 18 HOH HOH . H 5 HOH A 19 719 19 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 21 HOH HOH . H 5 HOH A 22 722 22 HOH HOH . H 5 HOH A 23 723 23 HOH HOH . H 5 HOH A 24 724 24 HOH HOH . H 5 HOH A 25 725 25 HOH HOH . H 5 HOH A 26 726 26 HOH HOH . H 5 HOH A 27 727 27 HOH HOH . H 5 HOH A 28 728 28 HOH HOH . H 5 HOH A 29 729 29 HOH HOH . H 5 HOH A 30 730 30 HOH HOH . H 5 HOH A 31 731 31 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 33 HOH HOH . H 5 HOH A 34 734 34 HOH HOH . H 5 HOH A 35 735 35 HOH HOH . H 5 HOH A 36 736 36 HOH HOH . H 5 HOH A 37 737 37 HOH HOH . H 5 HOH A 38 738 38 HOH HOH . H 5 HOH A 39 739 39 HOH HOH . H 5 HOH A 40 740 40 HOH HOH . H 5 HOH A 41 741 41 HOH HOH . H 5 HOH A 42 742 42 HOH HOH . H 5 HOH A 43 743 43 HOH HOH . H 5 HOH A 44 744 44 HOH HOH . H 5 HOH A 45 745 45 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 47 HOH HOH . H 5 HOH A 48 748 48 HOH HOH . H 5 HOH A 49 749 49 HOH HOH . H 5 HOH A 50 750 50 HOH HOH . H 5 HOH A 51 751 51 HOH HOH . H 5 HOH A 52 752 52 HOH HOH . H 5 HOH A 53 753 53 HOH HOH . H 5 HOH A 54 754 54 HOH HOH . H 5 HOH A 55 755 55 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 3 0.448 42.509 16.664 1 17.84 ? PA FAD 600 A 1 HETATM 2 O O1A FAD . . . F 3 0.699 41.072 16.435 1 18.32 ? O1A FAD 600 A 1 HETATM 3 O O2A FAD . . . F 3 1.428 43.165 17.491 1 18.37 ? O2A FAD 600 A 1 HETATM 4 O O5B FAD . . . F 3 -0.885 42.598 17.487 1 17.4 ? O5B FAD 600 A 1 HETATM 5 C C5B FAD . . . F 3 -1.876 41.482 17.354 1 16.12 ? C5B FAD 600 A 1 HETATM 6 C C4B FAD . . . F 3 -3.505 41.171 17.806 1 15.96 ? C4B FAD 600 A 1 HETATM 7 O O4B FAD . . . F 3 -4.593 40.507 17.194 1 16.83 ? O4B FAD 600 A 1 HETATM 8 C C3B FAD . . . F 3 -2.681 39.96 18.281 1 16.32 ? C3B FAD 600 A 1 HETATM 9 O O3B FAD . . . F 3 -2.404 40.197 19.673 1 15.15 ? O3B FAD 600 A 1 HETATM 10 C C2B FAD . . . F 3 -3.634 38.798 18.032 1 16.48 ? C2B FAD 600 A 1 HETATM 11 O O2B FAD . . . F 3 -3.583 37.588 18.726 1 15.57 ? O2B FAD 600 A 1 HETATM 12 C C1B FAD . . . F 3 -4.937 39.527 18.201 1 16.78 ? C1B FAD 600 A 1 HETATM 13 N N9A FAD . . . F 3 -5.9 38.886 17.297 1 17.47 ? N9A FAD 600 A 1 HETATM 14 C C8A FAD . . . F 3 -5.628 38.288 16.091 1 15.2 ? C8A FAD 600 A 1 HETATM 15 N N7A FAD . . . F 3 -6.743 37.857 15.578 1 16.55 ? N7A FAD 600 A 1 HETATM 16 C C5A FAD . . . F 3 -7.774 38.193 16.467 1 16.78 ? C5A FAD 600 A 1 HETATM 17 C C6A FAD . . . F 3 -9.165 38.019 16.496 1 17.81 ? C6A FAD 600 A 1 HETATM 18 N N6A FAD . . . F 3 -9.756 37.371 15.484 1 18.62 ? N6A FAD 600 A 1 HETATM 19 N N1A FAD . . . F 3 -9.783 38.515 17.549 1 17.59 ? N1A FAD 600 A 1 HETATM 20 C C2A FAD . . . F 3 -9.148 39.131 18.527 1 16.65 ? C2A FAD 600 A 1 HETATM 21 N N3A FAD . . . F 3 -7.843 39.404 18.666 1 16.07 ? N3A FAD 600 A 1 HETATM 22 C C4A FAD . . . F 3 -7.24 38.887 17.575 1 16.22 ? C4A FAD 600 A 1 HETATM 23 N N1 FAD . . . F 3 9.344 45.5 13.251 1 21.75 ? N1 FAD 600 A 1 HETATM 24 C C2 FAD . . . F 3 10.06 46.665 13.308 1 23.7 ? C2 FAD 600 A 1 HETATM 25 O O2 FAD . . . F 3 9.726 47.592 12.554 1 23.4 ? O2 FAD 600 A 1 HETATM 26 N N3 FAD . . . F 3 11.132 46.844 14.201 1 21.91 ? N3 FAD 600 A 1 HETATM 27 C C4 FAD . . . F 3 11.447 45.766 15.009 1 23.24 ? C4 FAD 600 A 1 HETATM 28 O O4 FAD . . . F 3 12.427 45.927 15.788 1 27.77 ? O4 FAD 600 A 1 HETATM 29 C C4X FAD . . . F 3 10.67 44.503 14.934 1 19.74 ? C4X FAD 600 A 1 HETATM 30 N N5 FAD . . . F 3 10.918 43.43 15.667 1 16.97 ? N5 FAD 600 A 1 HETATM 31 C C5X FAD . . . F 3 10.298 42.259 15.465 1 15.83 ? C5X FAD 600 A 1 HETATM 32 C C6 FAD . . . F 3 10.756 41.196 16.27 1 12.64 ? C6 FAD 600 A 1 HETATM 33 C C7 FAD . . . F 3 9.941 40.068 16.454 1 12.14 ? C7 FAD 600 A 1 HETATM 34 C C7M FAD . . . F 3 10.406 38.91 17.32 1 12.91 ? C7M FAD 600 A 1 HETATM 35 C C8 FAD . . . F 3 8.648 40.095 15.81 1 12.49 ? C8 FAD 600 A 1 HETATM 36 C C8M FAD . . . F 3 7.696 38.922 15.977 1 12.83 ? C8M FAD 600 A 1 HETATM 37 C C9 FAD . . . F 3 8.187 41.171 15.022 1 13.28 ? C9 FAD 600 A 1 HETATM 38 C C9A FAD . . . F 3 9.022 42.282 14.818 1 16.28 ? C9A FAD 600 A 1 HETATM 39 N N10 FAD . . . F 3 8.848 43.324 13.94 1 18.24 ? N10 FAD 600 A 1 HETATM 40 C C10 FAD . . . F 3 9.611 44.453 14.035 1 18.64 ? C10 FAD 600 A 1 HETATM 41 C C1' FAD . . . F 3 7.727 43.639 13.051 1 18.79 ? C1' FAD 600 A 1 HETATM 42 C C2' FAD . . . F 3 6.452 44.283 14.152 1 18.31 ? C2' FAD 600 A 1 HETATM 43 O O2' FAD . . . F 3 6.575 43.268 15.137 1 18.07 ? O2' FAD 600 A 1 HETATM 44 C C3' FAD . . . F 3 5.123 43.972 13.422 1 18.37 ? C3' FAD 600 A 1 HETATM 45 O O3' FAD . . . F 3 5.359 42.819 12.538 1 20.42 ? O3' FAD 600 A 1 HETATM 46 C C4' FAD . . . F 3 4.067 43.796 14.525 1 16.43 ? C4' FAD 600 A 1 HETATM 47 O O4' FAD . . . F 3 4.275 44.964 15.222 1 15.38 ? O4' FAD 600 A 1 HETATM 48 C C5' FAD . . . F 3 2.691 43.843 14.022 1 16.51 ? C5' FAD 600 A 1 HETATM 49 O O5' FAD . . . F 3 1.755 44.797 14.581 1 17.08 ? O5' FAD 600 A 1 HETATM 50 P P FAD . . . F 3 0.245 44.642 14.642 1 17.35 ? P FAD 600 A 1 HETATM 51 O O1P FAD . . . F 3 -0.305 44.546 13.324 1 18.29 ? O1P FAD 600 A 1 HETATM 52 O O2P FAD . . . F 3 -0.35 45.778 15.354 1 16.11 ? O2P FAD 600 A 1 HETATM 53 O O3P FAD . . . F 3 0.015 43.304 15.383 1 17.08 ? O3P FAD 600 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #