data_1D4E # _model_server_result.job_id vUkZ0VidddSgChqCZxqQog _model_server_result.datetime_utc '2024-11-29 16:03:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 1D4E # _exptl.entry_id 1D4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4E _cell.length_a 73.08 _cell.length_b 73.08 _cell.length_c 216.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 16 A CYS 15 1_555 D CAB HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale2 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale3 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 231 n n FE NB HEC sing 232 n n FE NC HEC sing 233 n n FE ND HEC sing 234 n n CHA C1A HEC doub 235 n n CHA C4D HEC sing 236 n n CHA HHA HEC sing 237 n n CHB C4A HEC doub 238 n n CHB C1B HEC sing 239 n n CHB HHB HEC sing 240 n n CHC C4B HEC doub 241 n n CHC C1C HEC sing 242 n n CHC HHC HEC sing 243 n n CHD C4C HEC doub 244 n n CHD C1D HEC sing 245 n n CHD HHD HEC sing 246 n n NA C1A HEC sing 247 n y NA C4A HEC sing 248 n y C1A C2A HEC sing 249 n y C2A C3A HEC doub 250 n y C2A CAA HEC sing 251 n n C3A C4A HEC sing 252 n y C3A CMA HEC sing 253 n n CMA HMA1 HEC sing 254 n n CMA HMA2 HEC sing 255 n n CMA HMA3 HEC sing 256 n n CAA CBA HEC sing 257 n n CAA HAA1 HEC sing 258 n n CAA HAA2 HEC sing 259 n n CBA CGA HEC sing 260 n n CBA HBA1 HEC sing 261 n n CBA HBA2 HEC sing 262 n n CGA O1A HEC doub 263 n n CGA O2A HEC sing 264 n n O2A H2A HEC sing 265 n n NB C1B HEC sing 266 n y NB C4B HEC sing 267 n y C1B C2B HEC doub 268 n y C2B C3B HEC sing 269 n y C2B CMB HEC sing 270 n n C3B C4B HEC sing 271 n y C3B CAB HEC doub 272 e n CMB HMB1 HEC sing 273 n n CMB HMB2 HEC sing 274 n n CMB HMB3 HEC sing 275 n n CAB CBB HEC sing 276 n n CAB HAB HEC sing 277 n n CBB HBB1 HEC sing 278 n n CBB HBB2 HEC sing 279 n n CBB HBB3 HEC sing 280 n n NC C1C HEC sing 281 n y NC C4C HEC sing 282 n y C1C C2C HEC doub 283 n y C2C C3C HEC sing 284 n y C2C CMC HEC sing 285 n n C3C C4C HEC sing 286 n y C3C CAC HEC doub 287 e n CMC HMC1 HEC sing 288 n n CMC HMC2 HEC sing 289 n n CMC HMC3 HEC sing 290 n n CAC CBC HEC sing 291 n n CAC HAC HEC sing 292 n n CBC HBC1 HEC sing 293 n n CBC HBC2 HEC sing 294 n n CBC HBC3 HEC sing 295 n n ND C1D HEC sing 296 n y ND C4D HEC sing 297 n y C1D C2D HEC doub 298 n y C2D C3D HEC sing 299 n y C2D CMD HEC sing 300 n n C3D C4D HEC doub 301 n y C3D CAD HEC sing 302 n n CMD HMD1 HEC sing 303 n n CMD HMD2 HEC sing 304 n n CMD HMD3 HEC sing 305 n n CAD CBD HEC sing 306 n n CAD HAD1 HEC sing 307 n n CAD HAD2 HEC sing 308 n n CBD CGD HEC sing 309 n n CBD HBD1 HEC sing 310 n n CBD HBD2 HEC sing 311 n n CGD O1D HEC doub 312 n n CGD O2D HEC sing 313 n n O2D H2D HEC sing 314 n n # _atom_sites.entry_id 1D4E _atom_sites.fract_transf_matrix[1][1] 0.01368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEM . F 3 FAD A 1 600 600 FAD FAD . G 4 FUM A 1 700 700 FUM FUM . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 2 HOH HOH . H 5 HOH A 3 703 3 HOH HOH . H 5 HOH A 4 704 4 HOH HOH . H 5 HOH A 5 705 5 HOH HOH . H 5 HOH A 6 706 6 HOH HOH . H 5 HOH A 7 707 7 HOH HOH . H 5 HOH A 8 708 8 HOH HOH . H 5 HOH A 9 709 9 HOH HOH . H 5 HOH A 10 710 10 HOH HOH . H 5 HOH A 11 711 11 HOH HOH . H 5 HOH A 12 712 12 HOH HOH . H 5 HOH A 13 713 13 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 15 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 17 HOH HOH . H 5 HOH A 18 718 18 HOH HOH . H 5 HOH A 19 719 19 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 21 HOH HOH . H 5 HOH A 22 722 22 HOH HOH . H 5 HOH A 23 723 23 HOH HOH . H 5 HOH A 24 724 24 HOH HOH . H 5 HOH A 25 725 25 HOH HOH . H 5 HOH A 26 726 26 HOH HOH . H 5 HOH A 27 727 27 HOH HOH . H 5 HOH A 28 728 28 HOH HOH . H 5 HOH A 29 729 29 HOH HOH . H 5 HOH A 30 730 30 HOH HOH . H 5 HOH A 31 731 31 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 33 HOH HOH . H 5 HOH A 34 734 34 HOH HOH . H 5 HOH A 35 735 35 HOH HOH . H 5 HOH A 36 736 36 HOH HOH . H 5 HOH A 37 737 37 HOH HOH . H 5 HOH A 38 738 38 HOH HOH . H 5 HOH A 39 739 39 HOH HOH . H 5 HOH A 40 740 40 HOH HOH . H 5 HOH A 41 741 41 HOH HOH . H 5 HOH A 42 742 42 HOH HOH . H 5 HOH A 43 743 43 HOH HOH . H 5 HOH A 44 744 44 HOH HOH . H 5 HOH A 45 745 45 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 47 HOH HOH . H 5 HOH A 48 748 48 HOH HOH . H 5 HOH A 49 749 49 HOH HOH . H 5 HOH A 50 750 50 HOH HOH . H 5 HOH A 51 751 51 HOH HOH . H 5 HOH A 52 752 52 HOH HOH . H 5 HOH A 53 753 53 HOH HOH . H 5 HOH A 54 754 54 HOH HOH . H 5 HOH A 55 755 55 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 2.053 33.031 39.992 1 20.71 ? FE HEC 602 A 1 HETATM 2 C CHA HEC . . . C 2 3.798 30.765 41.821 1 25.48 ? CHA HEC 602 A 1 HETATM 3 C CHB HEC . . . C 2 0.005 33.601 42.681 1 21.75 ? CHB HEC 602 A 1 HETATM 4 C CHC HEC . . . C 2 0.752 35.708 38.396 1 19.95 ? CHC HEC 602 A 1 HETATM 5 C CHD HEC . . . C 2 3.214 31.739 37.097 1 25.35 ? CHD HEC 602 A 1 HETATM 6 N NA HEC . . . C 2 1.938 32.316 41.887 1 23.29 ? NA HEC 602 A 1 HETATM 7 C C1A HEC . . . C 2 2.789 31.405 42.491 1 22.74 ? C1A HEC 602 A 1 HETATM 8 C C2A HEC . . . C 2 2.419 31.227 43.865 1 22.79 ? C2A HEC 602 A 1 HETATM 9 C C3A HEC . . . C 2 1.37 32.014 44.116 1 23.42 ? C3A HEC 602 A 1 HETATM 10 C C4A HEC . . . C 2 1.055 32.714 42.89 1 22.94 ? C4A HEC 602 A 1 HETATM 11 C CMA HEC . . . C 2 0.59 32.212 45.438 1 23.19 ? CMA HEC 602 A 1 HETATM 12 C CAA HEC . . . C 2 3.239 30.294 44.786 1 21.57 ? CAA HEC 602 A 1 HETATM 13 C CBA HEC . . . C 2 4.583 31.046 45.057 1 21.62 ? CBA HEC 602 A 1 HETATM 14 C CGA HEC . . . C 2 4.392 32.138 46.091 1 21.8 ? CGA HEC 602 A 1 HETATM 15 O O1A HEC . . . C 2 5.231 33.064 46.162 1 19.68 ? O1A HEC 602 A 1 HETATM 16 O O2A HEC . . . C 2 3.355 31.914 46.791 1 22.62 ? O2A HEC 602 A 1 HETATM 17 N NB HEC . . . C 2 0.601 34.329 40.425 1 19.8 ? NB HEC 602 A 1 HETATM 18 C C1B HEC . . . C 2 -0.09 34.472 41.61 1 19.75 ? C1B HEC 602 A 1 HETATM 19 C C2B HEC . . . C 2 -0.898 35.668 41.547 1 18.98 ? C2B HEC 602 A 1 HETATM 20 C C3B HEC . . . C 2 -0.643 36.242 40.374 1 18.24 ? C3B HEC 602 A 1 HETATM 21 C C4B HEC . . . C 2 0.272 35.411 39.643 1 18.88 ? C4B HEC 602 A 1 HETATM 22 C CMB HEC . . . C 2 -1.83 36.241 42.633 1 19.14 ? CMB HEC 602 A 1 HETATM 23 C CAB HEC . . . C 2 -1.255 37.607 39.861 1 14.59 ? CAB HEC 602 A 1 HETATM 24 C CBB HEC . . . C 2 -0.613 38.753 40.253 1 11.61 ? CBB HEC 602 A 1 HETATM 25 N NC HEC . . . C 2 2.009 33.609 38.107 1 23.28 ? NC HEC 602 A 1 HETATM 26 C C1C HEC . . . C 2 1.417 34.779 37.644 1 22.45 ? C1C HEC 602 A 1 HETATM 27 C C2C HEC . . . C 2 1.643 34.852 36.217 1 22.71 ? C2C HEC 602 A 1 HETATM 28 C C3C HEC . . . C 2 2.352 33.766 35.84 1 22.47 ? C3C HEC 602 A 1 HETATM 29 C C4C HEC . . . C 2 2.554 32.949 37.004 1 23.68 ? C4C HEC 602 A 1 HETATM 30 C CMC HEC . . . C 2 1.139 36.057 35.399 1 22.03 ? CMC HEC 602 A 1 HETATM 31 C CAC HEC . . . C 2 2.79 33.442 34.379 1 20.06 ? CAC HEC 602 A 1 HETATM 32 C CBC HEC . . . C 2 3.585 34.371 33.764 1 19.49 ? CBC HEC 602 A 1 HETATM 33 N ND HEC . . . C 2 3.216 31.503 39.524 1 24.54 ? ND HEC 602 A 1 HETATM 34 C C1D HEC . . . C 2 3.679 31.18 38.277 1 25.37 ? C1D HEC 602 A 1 HETATM 35 C C2D HEC . . . C 2 4.703 30.178 38.394 1 27.73 ? C2D HEC 602 A 1 HETATM 36 C C3D HEC . . . C 2 4.857 29.896 39.694 1 29.95 ? C3D HEC 602 A 1 HETATM 37 C C4D HEC . . . C 2 3.916 30.73 40.438 1 27.9 ? C4D HEC 602 A 1 HETATM 38 C CMD HEC . . . C 2 5.412 29.564 37.174 1 28.06 ? CMD HEC 602 A 1 HETATM 39 C CAD HEC . . . C 2 5.795 28.899 40.396 1 32.85 ? CAD HEC 602 A 1 HETATM 40 C CBD HEC . . . C 2 7.207 28.726 39.896 1 37.85 ? CBD HEC 602 A 1 HETATM 41 C CGD HEC . . . C 2 8.219 29.744 40.356 1 42.01 ? CGD HEC 602 A 1 HETATM 42 O O1D HEC . . . C 2 9.465 29.543 40.097 1 45.02 ? O1D HEC 602 A 1 HETATM 43 O O2D HEC . . . C 2 7.79 30.768 40.964 1 41.61 ? O2D HEC 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #