data_1D4E
#
_model_server_result.job_id            IbM83M14CjzybJ4SG-O9Fg 
_model_server_result.datetime_utc      '2024-11-29 16:10:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d4e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    1D4E 
#
_exptl.entry_id    1D4E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1D4E 
_cell.length_a            73.08 
_cell.length_b            73.08 
_cell.length_c            216.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D4E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 16 A CYS 15 1_555 D CAB HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale2 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
covale ? covale3 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 231 n n 
FE NB HEC sing 232 n n 
FE NC HEC sing 233 n n 
FE ND HEC sing 234 n n 
CHA C1A HEC doub 235 n n 
CHA C4D HEC sing 236 n n 
CHA HHA HEC sing 237 n n 
CHB C4A HEC doub 238 n n 
CHB C1B HEC sing 239 n n 
CHB HHB HEC sing 240 n n 
CHC C4B HEC doub 241 n n 
CHC C1C HEC sing 242 n n 
CHC HHC HEC sing 243 n n 
CHD C4C HEC doub 244 n n 
CHD C1D HEC sing 245 n n 
CHD HHD HEC sing 246 n n 
NA C1A HEC sing 247 n y 
NA C4A HEC sing 248 n y 
C1A C2A HEC sing 249 n y 
C2A C3A HEC doub 250 n y 
C2A CAA HEC sing 251 n n 
C3A C4A HEC sing 252 n y 
C3A CMA HEC sing 253 n n 
CMA HMA1 HEC sing 254 n n 
CMA HMA2 HEC sing 255 n n 
CMA HMA3 HEC sing 256 n n 
CAA CBA HEC sing 257 n n 
CAA HAA1 HEC sing 258 n n 
CAA HAA2 HEC sing 259 n n 
CBA CGA HEC sing 260 n n 
CBA HBA1 HEC sing 261 n n 
CBA HBA2 HEC sing 262 n n 
CGA O1A HEC doub 263 n n 
CGA O2A HEC sing 264 n n 
O2A H2A HEC sing 265 n n 
NB C1B HEC sing 266 n y 
NB C4B HEC sing 267 n y 
C1B C2B HEC doub 268 n y 
C2B C3B HEC sing 269 n y 
C2B CMB HEC sing 270 n n 
C3B C4B HEC sing 271 n y 
C3B CAB HEC doub 272 e n 
CMB HMB1 HEC sing 273 n n 
CMB HMB2 HEC sing 274 n n 
CMB HMB3 HEC sing 275 n n 
CAB CBB HEC sing 276 n n 
CAB HAB HEC sing 277 n n 
CBB HBB1 HEC sing 278 n n 
CBB HBB2 HEC sing 279 n n 
CBB HBB3 HEC sing 280 n n 
NC C1C HEC sing 281 n y 
NC C4C HEC sing 282 n y 
C1C C2C HEC doub 283 n y 
C2C C3C HEC sing 284 n y 
C2C CMC HEC sing 285 n n 
C3C C4C HEC sing 286 n y 
C3C CAC HEC doub 287 e n 
CMC HMC1 HEC sing 288 n n 
CMC HMC2 HEC sing 289 n n 
CMC HMC3 HEC sing 290 n n 
CAC CBC HEC sing 291 n n 
CAC HAC HEC sing 292 n n 
CBC HBC1 HEC sing 293 n n 
CBC HBC2 HEC sing 294 n n 
CBC HBC3 HEC sing 295 n n 
ND C1D HEC sing 296 n y 
ND C4D HEC sing 297 n y 
C1D C2D HEC doub 298 n y 
C2D C3D HEC sing 299 n y 
C2D CMD HEC sing 300 n n 
C3D C4D HEC doub 301 n y 
C3D CAD HEC sing 302 n n 
CMD HMD1 HEC sing 303 n n 
CMD HMD2 HEC sing 304 n n 
CMD HMD3 HEC sing 305 n n 
CAD CBD HEC sing 306 n n 
CAD HAD1 HEC sing 307 n n 
CAD HAD2 HEC sing 308 n n 
CBD CGD HEC sing 309 n n 
CBD HBD1 HEC sing 310 n n 
CBD HBD2 HEC sing 311 n n 
CGD O1D HEC doub 312 n n 
CGD O2D HEC sing 313 n n 
O2D H2D HEC sing 314 n n 
#
_atom_sites.entry_id                     1D4E 
_atom_sites.fract_transf_matrix[1][1]    0.01368 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00463 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 601 601 HEC HEM . 
C 2 HEC A 1 602 602 HEC HEM . 
D 2 HEC A 1 603 603 HEC HEM . 
E 2 HEC A 1 604 604 HEC HEM . 
F 3 FAD A 1 600 600 FAD FAD . 
G 4 FUM A 1 700 700 FUM FUM . 
H 5 HOH A 1 701 1 HOH HOH . 
H 5 HOH A 2 702 2 HOH HOH . 
H 5 HOH A 3 703 3 HOH HOH . 
H 5 HOH A 4 704 4 HOH HOH . 
H 5 HOH A 5 705 5 HOH HOH . 
H 5 HOH A 6 706 6 HOH HOH . 
H 5 HOH A 7 707 7 HOH HOH . 
H 5 HOH A 8 708 8 HOH HOH . 
H 5 HOH A 9 709 9 HOH HOH . 
H 5 HOH A 10 710 10 HOH HOH . 
H 5 HOH A 11 711 11 HOH HOH . 
H 5 HOH A 12 712 12 HOH HOH . 
H 5 HOH A 13 713 13 HOH HOH . 
H 5 HOH A 14 714 14 HOH HOH . 
H 5 HOH A 15 715 15 HOH HOH . 
H 5 HOH A 16 716 16 HOH HOH . 
H 5 HOH A 17 717 17 HOH HOH . 
H 5 HOH A 18 718 18 HOH HOH . 
H 5 HOH A 19 719 19 HOH HOH . 
H 5 HOH A 20 720 20 HOH HOH . 
H 5 HOH A 21 721 21 HOH HOH . 
H 5 HOH A 22 722 22 HOH HOH . 
H 5 HOH A 23 723 23 HOH HOH . 
H 5 HOH A 24 724 24 HOH HOH . 
H 5 HOH A 25 725 25 HOH HOH . 
H 5 HOH A 26 726 26 HOH HOH . 
H 5 HOH A 27 727 27 HOH HOH . 
H 5 HOH A 28 728 28 HOH HOH . 
H 5 HOH A 29 729 29 HOH HOH . 
H 5 HOH A 30 730 30 HOH HOH . 
H 5 HOH A 31 731 31 HOH HOH . 
H 5 HOH A 32 732 32 HOH HOH . 
H 5 HOH A 33 733 33 HOH HOH . 
H 5 HOH A 34 734 34 HOH HOH . 
H 5 HOH A 35 735 35 HOH HOH . 
H 5 HOH A 36 736 36 HOH HOH . 
H 5 HOH A 37 737 37 HOH HOH . 
H 5 HOH A 38 738 38 HOH HOH . 
H 5 HOH A 39 739 39 HOH HOH . 
H 5 HOH A 40 740 40 HOH HOH . 
H 5 HOH A 41 741 41 HOH HOH . 
H 5 HOH A 42 742 42 HOH HOH . 
H 5 HOH A 43 743 43 HOH HOH . 
H 5 HOH A 44 744 44 HOH HOH . 
H 5 HOH A 45 745 45 HOH HOH . 
H 5 HOH A 46 746 46 HOH HOH . 
H 5 HOH A 47 747 47 HOH HOH . 
H 5 HOH A 48 748 48 HOH HOH . 
H 5 HOH A 49 749 49 HOH HOH . 
H 5 HOH A 50 750 50 HOH HOH . 
H 5 HOH A 51 751 51 HOH HOH . 
H 5 HOH A 52 752 52 HOH HOH . 
H 5 HOH A 53 753 53 HOH HOH . 
H 5 HOH A 54 754 54 HOH HOH . 
H 5 HOH A 55 755 55 HOH HOH . 
H 5 HOH A 56 756 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . E 2 -4.694 30.753 46.278 1 27.99 ? FE HEC 604 A 1 
HETATM 2 C CHA HEC . . . E 2 -2.638 28.384 47.539 1 30.63 ? CHA HEC 604 A 1 
HETATM 3 C CHB HEC . . . E 2 -2.965 30.846 43.413 1 28.76 ? CHB HEC 604 A 1 
HETATM 4 C CHC HEC . . . E 2 -7.161 32.724 44.919 1 27.26 ? CHC HEC 604 A 1 
HETATM 5 C CHD HEC . . . E 2 -5.611 31.627 49.402 1 30.27 ? CHD HEC 604 A 1 
HETATM 6 N NA HEC . . . E 2 -3.11 29.796 45.587 1 29.21 ? NA HEC 604 A 1 
HETATM 7 C C1A HEC . . . E 2 -2.371 28.864 46.282 1 30.35 ? C1A HEC 604 A 1 
HETATM 8 C C2A HEC . . . E 2 -1.26 28.441 45.451 1 32.3 ? C2A HEC 604 A 1 
HETATM 9 C C3A HEC . . . E 2 -1.324 29.118 44.303 1 31.35 ? C3A HEC 604 A 1 
HETATM 10 C C4A HEC . . . E 2 -2.5 29.97 44.371 1 30.11 ? C4A HEC 604 A 1 
HETATM 11 C CMA HEC . . . E 2 -0.392 29.068 43.081 1 29.61 ? CMA HEC 604 A 1 
HETATM 12 C CAA HEC . . . E 2 -0.278 27.447 46.015 1 34.74 ? CAA HEC 604 A 1 
HETATM 13 C CBA HEC . . . E 2 0.329 26.219 45.404 1 39.38 ? CBA HEC 604 A 1 
HETATM 14 C CGA HEC . . . E 2 1.337 25.714 46.435 1 42.22 ? CGA HEC 604 A 1 
HETATM 15 O O1A HEC . . . E 2 2.487 26.226 46.319 1 44.86 ? O1A HEC 604 A 1 
HETATM 16 O O2A HEC . . . E 2 0.852 24.916 47.268 1 43.39 ? O2A HEC 604 A 1 
HETATM 17 N NB HEC . . . E 2 -4.975 31.649 44.508 1 28.12 ? NB HEC 604 A 1 
HETATM 18 C C1B HEC . . . E 2 -4.174 31.506 43.398 1 27.08 ? C1B HEC 604 A 1 
HETATM 19 C C2B HEC . . . E 2 -4.832 32.132 42.285 1 25.96 ? C2B HEC 604 A 1 
HETATM 20 C C3B HEC . . . E 2 -6.002 32.615 42.689 1 25.66 ? C3B HEC 604 A 1 
HETATM 21 C C4B HEC . . . E 2 -6.113 32.368 44.094 1 27.2 ? C4B HEC 604 A 1 
HETATM 22 C CMB HEC . . . E 2 -4.237 32.181 40.869 1 27.73 ? CMB HEC 604 A 1 
HETATM 23 C CAB HEC . . . E 2 -7.013 33.369 41.768 1 24.81 ? CAB HEC 604 A 1 
HETATM 24 C CBB HEC . . . E 2 -7.665 32.647 40.778 1 23.5 ? CBB HEC 604 A 1 
HETATM 25 N NC HEC . . . E 2 -6.093 31.948 47.023 1 27.3 ? NC HEC 604 A 1 
HETATM 26 C C1C HEC . . . E 2 -7.037 32.64 46.302 1 27.23 ? C1C HEC 604 A 1 
HETATM 27 C C2C HEC . . . E 2 -7.916 33.299 47.237 1 27.6 ? C2C HEC 604 A 1 
HETATM 28 C C3C HEC . . . E 2 -7.51 32.986 48.456 1 27.69 ? C3C HEC 604 A 1 
HETATM 29 C C4C HEC . . . E 2 -6.335 32.175 48.353 1 28.34 ? C4C HEC 604 A 1 
HETATM 30 C CMC HEC . . . E 2 -9.117 34.194 46.831 1 28.18 ? CMC HEC 604 A 1 
HETATM 31 C CAC HEC . . . E 2 -8.128 33.553 49.763 1 28.88 ? CAC HEC 604 A 1 
HETATM 32 C CBC HEC . . . E 2 -9.462 33.366 49.971 1 31.03 ? CBC HEC 604 A 1 
HETATM 33 N ND HEC . . . E 2 -4.197 30.148 48.15 1 30.11 ? ND HEC 604 A 1 
HETATM 34 C C1D HEC . . . E 2 -4.719 30.566 49.355 1 30.11 ? C1D HEC 604 A 1 
HETATM 35 C C2D HEC . . . E 2 -4.198 29.758 50.449 1 30.17 ? C2D HEC 604 A 1 
HETATM 36 C C3D HEC . . . E 2 -3.377 28.849 49.941 1 30.1 ? C3D HEC 604 A 1 
HETATM 37 C C4D HEC . . . E 2 -3.361 29.081 48.496 1 30.94 ? C4D HEC 604 A 1 
HETATM 38 C CMD HEC . . . E 2 -4.621 30.014 51.912 1 30.09 ? CMD HEC 604 A 1 
HETATM 39 C CAD HEC . . . E 2 -2.622 27.73 50.599 1 31.16 ? CAD HEC 604 A 1 
HETATM 40 C CBD HEC . . . E 2 -1.261 27.647 51.214 1 36.62 ? CBD HEC 604 A 1 
HETATM 41 C CGD HEC . . . E 2 -0.817 26.233 51.577 1 38.7 ? CGD HEC 604 A 1 
HETATM 42 O O1D HEC . . . E 2 0.421 26.171 51.782 1 38.88 ? O1D HEC 604 A 1 
HETATM 43 O O2D HEC . . . E 2 -1.691 25.315 51.625 1 39.82 ? O2D HEC 604 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           1212 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#