data_1D4E # _model_server_result.job_id x8KWDdanSjhTr9QR4f649g _model_server_result.datetime_utc '2024-11-29 16:14:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":700}' # _entry.id 1D4E # _exptl.entry_id 1D4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.072 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FUMARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4E _cell.length_a 73.08 _cell.length_b 73.08 _cell.length_c 216.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 16 A CYS 15 1_555 D CAB HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale2 A SG CYS 19 A CYS 18 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale3 A SG CYS 39 A CYS 38 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? covale ? covale4 A SG CYS 71 A CYS 70 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? covale ? covale5 A SG CYS 74 A CYS 73 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale6 A SG CYS 85 A CYS 84 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? covale ? covale7 A SG CYS 88 A CYS 87 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc1 A NE2 HIS 10 A HIS 9 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc3 A NE2 HIS 43 A HIS 42 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A NE2 HIS 61 A HIS 60 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc5 A NE2 HIS 64 A HIS 63 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc6 A NE2 HIS 75 A HIS 74 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 A NE2 HIS 78 A HIS 77 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc8 A NE2 HIS 89 A HIS 88 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C4 H4 O4' _chem_comp.formula_weight 116.072 _chem_comp.id FUM _chem_comp.mon_nstd_flag . _chem_comp.name 'FUMARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C FUM sing 174 n n OXT HXT FUM sing 175 n n C O FUM doub 176 n n C C4 FUM sing 177 n n C4 C5 FUM doub 178 e n C4 H4 FUM sing 179 n n C5 C6 FUM sing 180 n n C5 H5 FUM sing 181 n n C6 O7 FUM doub 182 n n C6 O8 FUM sing 183 n n O8 HO8 FUM sing 184 n n # _atom_sites.entry_id 1D4E _atom_sites.fract_transf_matrix[1][1] 0.01368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEM . F 3 FAD A 1 600 600 FAD FAD . G 4 FUM A 1 700 700 FUM FUM . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 2 HOH HOH . H 5 HOH A 3 703 3 HOH HOH . H 5 HOH A 4 704 4 HOH HOH . H 5 HOH A 5 705 5 HOH HOH . H 5 HOH A 6 706 6 HOH HOH . H 5 HOH A 7 707 7 HOH HOH . H 5 HOH A 8 708 8 HOH HOH . H 5 HOH A 9 709 9 HOH HOH . H 5 HOH A 10 710 10 HOH HOH . H 5 HOH A 11 711 11 HOH HOH . H 5 HOH A 12 712 12 HOH HOH . H 5 HOH A 13 713 13 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 15 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 17 HOH HOH . H 5 HOH A 18 718 18 HOH HOH . H 5 HOH A 19 719 19 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 21 HOH HOH . H 5 HOH A 22 722 22 HOH HOH . H 5 HOH A 23 723 23 HOH HOH . H 5 HOH A 24 724 24 HOH HOH . H 5 HOH A 25 725 25 HOH HOH . H 5 HOH A 26 726 26 HOH HOH . H 5 HOH A 27 727 27 HOH HOH . H 5 HOH A 28 728 28 HOH HOH . H 5 HOH A 29 729 29 HOH HOH . H 5 HOH A 30 730 30 HOH HOH . H 5 HOH A 31 731 31 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 33 HOH HOH . H 5 HOH A 34 734 34 HOH HOH . H 5 HOH A 35 735 35 HOH HOH . H 5 HOH A 36 736 36 HOH HOH . H 5 HOH A 37 737 37 HOH HOH . H 5 HOH A 38 738 38 HOH HOH . H 5 HOH A 39 739 39 HOH HOH . H 5 HOH A 40 740 40 HOH HOH . H 5 HOH A 41 741 41 HOH HOH . H 5 HOH A 42 742 42 HOH HOH . H 5 HOH A 43 743 43 HOH HOH . H 5 HOH A 44 744 44 HOH HOH . H 5 HOH A 45 745 45 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 47 HOH HOH . H 5 HOH A 48 748 48 HOH HOH . H 5 HOH A 49 749 49 HOH HOH . H 5 HOH A 50 750 50 HOH HOH . H 5 HOH A 51 751 51 HOH HOH . H 5 HOH A 52 752 52 HOH HOH . H 5 HOH A 53 753 53 HOH HOH . H 5 HOH A 54 754 54 HOH HOH . H 5 HOH A 55 755 55 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT FUM . . . G 4 15.604 44.103 15.316 1 37.89 ? OXT FUM 700 A 1 HETATM 2 C C FUM . . . G 4 15.552 43.241 14.359 1 38.49 ? C FUM 700 A 1 HETATM 3 O O FUM . . . G 4 16.58 42.569 14.032 1 39.92 ? O FUM 700 A 1 HETATM 4 C C4 FUM . . . G 4 14.188 43.056 13.594 1 37.05 ? C4 FUM 700 A 1 HETATM 5 C C5 FUM . . . G 4 13.526 44.142 13.089 1 34.35 ? C5 FUM 700 A 1 HETATM 6 C C6 FUM . . . G 4 12.114 43.977 12.334 1 33.17 ? C6 FUM 700 A 1 HETATM 7 O O7 FUM . . . G 4 11.673 45.063 11.845 1 32.04 ? O7 FUM 700 A 1 HETATM 8 O O8 FUM . . . G 4 11.6 42.766 12.268 1 33.33 ? O8 FUM 700 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 813 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #