data_1D4H # _model_server_result.job_id XapfXizxfh7OyvCqvbD4bw _model_server_result.datetime_utc '2025-02-27 02:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1D4H # _exptl.entry_id 1D4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 610.696 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,5-DIBENZYLOXY-3,4-DIHYDROXY-HEXANEDIOIC ACID BENZYLAMIDE (2-HYDROXY-INDAN-1-YL)-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4H _cell.length_a 58.457 _cell.length_b 86.307 _cell.length_c 46.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H38 N2 O7' _chem_comp.formula_weight 610.696 _chem_comp.id BEH _chem_comp.mon_nstd_flag . _chem_comp.name '2,5-DIBENZYLOXY-3,4-DIHYDROXY-HEXANEDIOIC ACID BENZYLAMIDE (2-HYDROXY-INDAN-1-YL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INHIBITOR BEA435' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 BEH sing 70 n n C01 C03 BEH sing 71 n n C01 C31 BEH sing 72 n n C01 H011 BEH sing 73 n n O02 H021 BEH sing 74 n n C03 O04 BEH sing 75 n n C03 C12 BEH sing 76 n n C03 H031 BEH sing 77 n n O04 C05 BEH sing 78 n n C05 C06 BEH sing 79 n n C05 H051 BEH sing 80 n n C05 H052 BEH sing 81 n n C06 C07 BEH doub 82 n y C06 C11 BEH sing 83 n y C07 C08 BEH sing 84 n y C07 H071 BEH sing 85 n n C08 C09 BEH doub 86 n y C08 H081 BEH sing 87 n n C09 C10 BEH sing 88 n y C09 H091 BEH sing 89 n n C10 C11 BEH doub 90 n y C10 H101 BEH sing 91 n n C11 H111 BEH sing 92 n n C12 O13 BEH doub 93 n n C12 N14 BEH sing 94 n n N14 C15 BEH sing 95 n n N14 H141 BEH sing 96 n n C15 C16 BEH sing 97 n n C15 C23 BEH sing 98 n n C15 H151 BEH sing 99 n n C16 C17 BEH doub 100 n y C16 C21 BEH sing 101 n y C17 C18 BEH sing 102 n y C17 H171 BEH sing 103 n n C18 C19 BEH doub 104 n y C18 H181 BEH sing 105 n n C19 C20 BEH sing 106 n y C19 H191 BEH sing 107 n n C20 C21 BEH doub 108 n y C20 H201 BEH sing 109 n n C21 C22 BEH sing 110 n n C22 C23 BEH sing 111 n n C22 H221 BEH sing 112 n n C22 H222 BEH sing 113 n n C23 O24 BEH sing 114 n n C23 H231 BEH sing 115 n n O24 H241 BEH sing 116 n n C31 O32 BEH sing 117 n n C31 C33 BEH sing 118 n n C31 H311 BEH sing 119 n n O32 H321 BEH sing 120 n n C33 O34 BEH sing 121 n n C33 C42 BEH sing 122 n n C33 H331 BEH sing 123 n n O34 C35 BEH sing 124 n n C35 C36 BEH sing 125 n n C35 H351 BEH sing 126 n n C35 H352 BEH sing 127 n n C36 C37 BEH doub 128 n y C36 C41 BEH sing 129 n y C37 C38 BEH sing 130 n y C37 H371 BEH sing 131 n n C38 C39 BEH doub 132 n y C38 H381 BEH sing 133 n n C39 C40 BEH sing 134 n y C39 H391 BEH sing 135 n n C40 C41 BEH doub 136 n y C40 H401 BEH sing 137 n n C41 H411 BEH sing 138 n n C42 O43 BEH doub 139 n n C42 N44 BEH sing 140 n n N44 C45 BEH sing 141 n n N44 H441 BEH sing 142 n n C45 C46 BEH sing 143 n n C45 H451 BEH sing 144 n n C45 H452 BEH sing 145 n n C46 C47 BEH doub 146 n y C46 C51 BEH sing 147 n y C47 C48 BEH sing 148 n y C47 H471 BEH sing 149 n n C48 C49 BEH doub 150 n y C48 H481 BEH sing 151 n n C49 C50 BEH sing 152 n y C49 H491 BEH sing 153 n n C50 C51 BEH doub 154 n y C50 H501 BEH sing 155 n n C51 H511 BEH sing 156 n n # _atom_sites.entry_id 1D4H _atom_sites.fract_transf_matrix[1][1] 0.017107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEH B 1 501 501 BEH BEH . D 3 HOH A 1 303 303 HOH HOH . D 3 HOH A 2 306 306 HOH HOH . D 3 HOH A 3 307 307 HOH HOH . D 3 HOH A 4 314 314 HOH HOH . D 3 HOH A 5 317 317 HOH HOH . D 3 HOH A 6 321 321 HOH HOH . D 3 HOH A 7 324 324 HOH HOH . D 3 HOH A 8 325 325 HOH HOH . D 3 HOH A 9 326 326 HOH HOH . D 3 HOH A 10 329 329 HOH HOH . D 3 HOH A 11 330 330 HOH HOH . D 3 HOH A 12 341 341 HOH HOH . D 3 HOH A 13 342 342 HOH HOH . D 3 HOH A 14 343 343 HOH HOH . D 3 HOH A 15 344 344 HOH HOH . D 3 HOH A 16 348 348 HOH HOH . D 3 HOH A 17 349 349 HOH HOH . D 3 HOH A 18 350 350 HOH HOH . D 3 HOH A 19 352 352 HOH HOH . D 3 HOH A 20 353 353 HOH HOH . D 3 HOH A 21 355 355 HOH HOH . D 3 HOH A 22 357 357 HOH HOH . D 3 HOH A 23 359 359 HOH HOH . D 3 HOH A 24 364 364 HOH HOH . D 3 HOH A 25 365 365 HOH HOH . D 3 HOH A 26 369 369 HOH HOH . D 3 HOH A 27 370 370 HOH HOH . D 3 HOH A 28 373 373 HOH HOH . D 3 HOH A 29 378 378 HOH HOH . D 3 HOH A 30 380 380 HOH HOH . D 3 HOH A 31 383 383 HOH HOH . D 3 HOH A 32 384 384 HOH HOH . D 3 HOH A 33 385 385 HOH HOH . D 3 HOH A 34 388 388 HOH HOH . D 3 HOH A 35 389 389 HOH HOH . D 3 HOH A 36 393 393 HOH HOH . D 3 HOH A 37 395 395 HOH HOH . D 3 HOH A 38 398 398 HOH HOH . D 3 HOH A 39 399 399 HOH HOH . D 3 HOH A 40 402 402 HOH HOH . D 3 HOH A 41 404 404 HOH HOH . D 3 HOH A 42 408 408 HOH HOH . D 3 HOH A 43 409 409 HOH HOH . D 3 HOH A 44 411 411 HOH HOH . D 3 HOH A 45 414 414 HOH HOH . D 3 HOH A 46 419 419 HOH HOH . D 3 HOH A 47 420 420 HOH HOH . D 3 HOH A 48 422 422 HOH HOH . D 3 HOH A 49 424 424 HOH HOH . D 3 HOH A 50 425 425 HOH HOH . D 3 HOH A 51 426 426 HOH HOH . D 3 HOH A 52 429 429 HOH HOH . D 3 HOH A 53 430 430 HOH HOH . D 3 HOH A 54 432 432 HOH HOH . D 3 HOH A 55 433 433 HOH HOH . E 3 HOH B 1 301 301 HOH HOH . E 3 HOH B 2 302 302 HOH HOH . E 3 HOH B 3 304 304 HOH HOH . E 3 HOH B 4 305 305 HOH HOH . E 3 HOH B 5 308 308 HOH HOH . E 3 HOH B 6 309 309 HOH HOH . E 3 HOH B 7 310 310 HOH HOH . E 3 HOH B 8 311 311 HOH HOH . E 3 HOH B 9 312 312 HOH HOH . E 3 HOH B 10 315 315 HOH HOH . E 3 HOH B 11 316 316 HOH HOH . E 3 HOH B 12 318 318 HOH HOH . E 3 HOH B 13 319 319 HOH HOH . E 3 HOH B 14 320 320 HOH HOH . E 3 HOH B 15 322 322 HOH HOH . E 3 HOH B 16 323 323 HOH HOH . E 3 HOH B 17 327 327 HOH HOH . E 3 HOH B 18 328 328 HOH HOH . E 3 HOH B 19 331 331 HOH HOH . E 3 HOH B 20 333 333 HOH HOH . E 3 HOH B 21 334 334 HOH HOH . E 3 HOH B 22 335 335 HOH HOH . E 3 HOH B 23 336 336 HOH HOH . E 3 HOH B 24 337 337 HOH HOH . E 3 HOH B 25 338 338 HOH HOH . E 3 HOH B 26 339 339 HOH HOH . E 3 HOH B 27 340 340 HOH HOH . E 3 HOH B 28 345 345 HOH HOH . E 3 HOH B 29 346 346 HOH HOH . E 3 HOH B 30 347 347 HOH HOH . E 3 HOH B 31 351 351 HOH HOH . E 3 HOH B 32 354 354 HOH HOH . E 3 HOH B 33 356 356 HOH HOH . E 3 HOH B 34 358 358 HOH HOH . E 3 HOH B 35 360 360 HOH HOH . E 3 HOH B 36 361 361 HOH HOH . E 3 HOH B 37 362 362 HOH HOH . E 3 HOH B 38 366 366 HOH HOH . E 3 HOH B 39 367 367 HOH HOH . E 3 HOH B 40 368 368 HOH HOH . E 3 HOH B 41 371 371 HOH HOH . E 3 HOH B 42 372 372 HOH HOH . E 3 HOH B 43 375 375 HOH HOH . E 3 HOH B 44 376 376 HOH HOH . E 3 HOH B 45 377 377 HOH HOH . E 3 HOH B 46 379 379 HOH HOH . E 3 HOH B 47 381 381 HOH HOH . E 3 HOH B 48 382 382 HOH HOH . E 3 HOH B 49 386 386 HOH HOH . E 3 HOH B 50 387 387 HOH HOH . E 3 HOH B 51 390 390 HOH HOH . E 3 HOH B 52 391 391 HOH HOH . E 3 HOH B 53 392 392 HOH HOH . E 3 HOH B 54 394 394 HOH HOH . E 3 HOH B 55 396 396 HOH HOH . E 3 HOH B 56 400 400 HOH HOH . E 3 HOH B 57 401 401 HOH HOH . E 3 HOH B 58 403 403 HOH HOH . E 3 HOH B 59 405 405 HOH HOH . E 3 HOH B 60 406 406 HOH HOH . E 3 HOH B 61 407 407 HOH HOH . E 3 HOH B 62 410 410 HOH HOH . E 3 HOH B 63 412 412 HOH HOH . E 3 HOH B 64 413 413 HOH HOH . E 3 HOH B 65 415 415 HOH HOH . E 3 HOH B 66 416 416 HOH HOH . E 3 HOH B 67 417 417 HOH HOH . E 3 HOH B 68 418 418 HOH HOH . E 3 HOH B 69 421 421 HOH HOH . E 3 HOH B 70 423 423 HOH HOH . E 3 HOH B 71 427 427 HOH HOH . E 3 HOH B 72 428 428 HOH HOH . E 3 HOH B 73 431 431 HOH HOH . E 3 HOH B 74 434 434 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BEH . . . C 2 13.883 22.983 5.004 1 19.87 ? C01 BEH 501 B 1 HETATM 2 O O02 BEH . . . C 2 14.365 22.667 3.66 1 20.12 ? O02 BEH 501 B 1 HETATM 3 C C03 BEH . . . C 2 14.96 22.721 6.028 1 19.52 ? C03 BEH 501 B 1 HETATM 4 O O04 BEH . . . C 2 14.517 23.066 7.369 1 20.56 ? O04 BEH 501 B 1 HETATM 5 C C05 BEH . . . C 2 15.619 23.41 8.248 1 20.76 ? C05 BEH 501 B 1 HETATM 6 C C06 BEH . . . C 2 16.326 22.203 8.848 1 20.8 ? C06 BEH 501 B 1 HETATM 7 C C07 BEH . . . C 2 15.564 21.204 9.583 1 21.86 ? C07 BEH 501 B 1 HETATM 8 C C08 BEH . . . C 2 16.21 20.002 10.042 1 21.63 ? C08 BEH 501 B 1 HETATM 9 C C09 BEH . . . C 2 17.609 19.797 9.784 1 21.67 ? C09 BEH 501 B 1 HETATM 10 C C10 BEH . . . C 2 18.373 20.789 9.07 1 21.32 ? C10 BEH 501 B 1 HETATM 11 C C11 BEH . . . C 2 17.739 21.99 8.603 1 20.94 ? C11 BEH 501 B 1 HETATM 12 C C12 BEH . . . C 2 15.155 21.244 5.914 1 18.94 ? C12 BEH 501 B 1 HETATM 13 O O13 BEH . . . C 2 14.225 20.473 6.169 1 19.08 ? O13 BEH 501 B 1 HETATM 14 N N14 BEH . . . C 2 16.395 20.777 5.525 1 17.68 ? N14 BEH 501 B 1 HETATM 15 C C15 BEH . . . C 2 16.662 19.363 5.38 1 18.43 ? C15 BEH 501 B 1 HETATM 16 C C16 BEH . . . C 2 16.58 18.898 3.946 1 18.43 ? C16 BEH 501 B 1 HETATM 17 C C17 BEH . . . C 2 15.71 19.334 2.886 1 18.84 ? C17 BEH 501 B 1 HETATM 18 C C18 BEH . . . C 2 15.826 18.736 1.576 1 19.42 ? C18 BEH 501 B 1 HETATM 19 C C19 BEH . . . C 2 16.812 17.713 1.337 1 19.92 ? C19 BEH 501 B 1 HETATM 20 C C20 BEH . . . C 2 17.691 17.275 2.388 1 18.43 ? C20 BEH 501 B 1 HETATM 21 C C21 BEH . . . C 2 17.563 17.879 3.686 1 19.22 ? C21 BEH 501 B 1 HETATM 22 C C22 BEH . . . C 2 18.359 17.605 4.916 1 19.37 ? C22 BEH 501 B 1 HETATM 23 C C23 BEH . . . C 2 18.071 18.874 5.757 1 19.13 ? C23 BEH 501 B 1 HETATM 24 O O24 BEH . . . C 2 19.007 19.905 5.441 1 20.05 ? O24 BEH 501 B 1 HETATM 25 C C31 BEH . . . C 2 13.353 24.394 5.02 1 20.14 ? C31 BEH 501 B 1 HETATM 26 O O32 BEH . . . C 2 14.387 25.231 4.432 1 19.5 ? O32 BEH 501 B 1 HETATM 27 C C33 BEH . . . C 2 12.026 24.57 4.279 1 19.55 ? C33 BEH 501 B 1 HETATM 28 O O34 BEH . . . C 2 11.809 23.544 3.268 1 21.72 ? O34 BEH 501 B 1 HETATM 29 C C35 BEH . . . C 2 11.16 24.06 2.079 1 21.37 ? C35 BEH 501 B 1 HETATM 30 C C36 BEH . . . C 2 9.643 24.159 2.171 1 21.31 ? C36 BEH 501 B 1 HETATM 31 C C37 BEH . . . C 2 8.972 25.382 1.789 1 21.35 ? C37 BEH 501 B 1 HETATM 32 C C38 BEH . . . C 2 7.543 25.503 1.936 1 22.16 ? C38 BEH 501 B 1 HETATM 33 C C39 BEH . . . C 2 6.78 24.403 2.459 1 22.04 ? C39 BEH 501 B 1 HETATM 34 C C40 BEH . . . C 2 7.437 23.177 2.836 1 21.9 ? C40 BEH 501 B 1 HETATM 35 C C41 BEH . . . C 2 8.864 23.048 2.693 1 22.04 ? C41 BEH 501 B 1 HETATM 36 C C42 BEH . . . C 2 10.912 24.511 5.307 1 19.3 ? C42 BEH 501 B 1 HETATM 37 O O43 BEH . . . C 2 10.742 23.512 6.023 1 19.02 ? O43 BEH 501 B 1 HETATM 38 N N44 BEH . . . C 2 10.041 25.575 5.391 1 18.01 ? N44 BEH 501 B 1 HETATM 39 C C45 BEH . . . C 2 8.949 25.569 6.344 1 19.26 ? C45 BEH 501 B 1 HETATM 40 C C46 BEH . . . C 2 8.927 26.524 7.415 1 19.21 ? C46 BEH 501 B 1 HETATM 41 C C47 BEH . . . C 2 7.739 27.326 7.645 1 20.31 ? C47 BEH 501 B 1 HETATM 42 C C48 BEH . . . C 2 7.719 28.279 8.725 1 20.66 ? C48 BEH 501 B 1 HETATM 43 C C49 BEH . . . C 2 8.872 28.434 9.571 1 20.93 ? C49 BEH 501 B 1 HETATM 44 C C50 BEH . . . C 2 10.054 27.641 9.346 1 20.58 ? C50 BEH 501 B 1 HETATM 45 C C51 BEH . . . C 2 10.084 26.687 8.27 1 20.12 ? C51 BEH 501 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 45 #