data_1D4I # _model_server_result.job_id J7Cklv2ASr_cjMpVoEuvGg _model_server_result.datetime_utc '2025-01-03 03:18:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1D4I # _exptl.entry_id 1D4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.733 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,5-DIBENZYLOXY-3-HYDROXY-HEXANEDIOIC ACID BIS-[(2-HYDROXY-INDAN-1-YL)-AMIDE]' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4I _cell.length_a 58.619 _cell.length_b 86.315 _cell.length_c 46.686 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H40 N2 O7' _chem_comp.formula_weight 636.733 _chem_comp.id BEG _chem_comp.mon_nstd_flag . _chem_comp.name '2,5-DIBENZYLOXY-3-HYDROXY-HEXANEDIOIC ACID BIS-[(2-HYDROXY-INDAN-1-YL)-AMIDE]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INHIBITOR BEA425' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 BEG doub 70 n y C01 C06 BEG sing 71 n y C01 C23 BEG sing 72 n n C02 C03 BEG sing 73 n y C02 H021 BEG sing 74 n n C03 C04 BEG doub 75 n y C03 H031 BEG sing 76 n n C04 C05 BEG sing 77 n y C04 H041 BEG sing 78 n n C05 C06 BEG doub 79 n y C05 H051 BEG sing 80 n n C06 H061 BEG sing 81 n n C07 C08 BEG doub 82 n y C07 C12 BEG sing 83 n y C07 C13 BEG sing 84 n n C08 C09 BEG sing 85 n y C08 H081 BEG sing 86 n n C09 C10 BEG doub 87 n y C09 H091 BEG sing 88 n n C10 C11 BEG sing 89 n y C10 H101 BEG sing 90 n n C11 C12 BEG doub 91 n y C11 H111 BEG sing 92 n n C12 H121 BEG sing 93 n n C13 O14 BEG sing 94 n n C13 H131 BEG sing 95 n n C13 H132 BEG sing 96 n n O14 C15 BEG sing 97 n n C23 O22 BEG sing 98 n n C23 H231 BEG sing 99 n n C23 H232 BEG sing 100 n n O22 C18 BEG sing 101 n n C15 C16 BEG sing 102 n n C15 C25 BEG sing 103 n n C15 H151 BEG sing 104 n n C16 C17 BEG sing 105 n n C16 H161 BEG sing 106 n n C16 H162 BEG sing 107 n n C17 O24 BEG sing 108 n n C17 C18 BEG sing 109 n n C17 H171 BEG sing 110 n n O24 H241 BEG sing 111 n n C18 C19 BEG sing 112 n n C18 H181 BEG sing 113 n n C19 O20 BEG doub 114 n n C19 N21 BEG sing 115 n n N21 C38 BEG sing 116 n n N21 H211 BEG sing 117 n n C25 O26 BEG doub 118 n n C25 N27 BEG sing 119 n n N27 C28 BEG sing 120 n n N27 H271 BEG sing 121 n n C28 C29 BEG sing 122 n n C28 C34 BEG sing 123 n n C28 H281 BEG sing 124 n n C29 C30 BEG doub 125 n y C29 C31 BEG sing 126 n y C30 C36 BEG sing 127 n y C30 C37 BEG sing 128 n n C31 C32 BEG doub 129 n y C31 H311 BEG sing 130 n n C32 C33 BEG sing 131 n y C32 H321 BEG sing 132 n n C33 C36 BEG doub 133 n y C33 H331 BEG sing 134 n n C34 O35 BEG sing 135 n n C34 C37 BEG sing 136 n n C34 H341 BEG sing 137 n n O35 H351 BEG sing 138 n n C36 H361 BEG sing 139 n n C37 H371 BEG sing 140 n n C37 H372 BEG sing 141 n n C38 C39 BEG sing 142 n n C38 C44 BEG sing 143 n n C38 H381 BEG sing 144 n n C39 C40 BEG doub 145 n y C39 C41 BEG sing 146 n y C40 C46 BEG sing 147 n y C40 C47 BEG sing 148 n n C41 C42 BEG doub 149 n y C41 H411 BEG sing 150 n n C42 C43 BEG sing 151 n y C42 H421 BEG sing 152 n n C43 C46 BEG doub 153 n y C43 H431 BEG sing 154 n n C44 O45 BEG sing 155 n n C44 C47 BEG sing 156 n n C44 H441 BEG sing 157 n n O45 H451 BEG sing 158 n n C46 H461 BEG sing 159 n n C47 H471 BEG sing 160 n n C47 H472 BEG sing 161 n n # _atom_sites.entry_id 1D4I _atom_sites.fract_transf_matrix[1][1] 0.017059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEG A 1 501 501 BEG BEG . D 3 HOH A 1 301 301 HOH HOH . D 3 HOH A 2 303 303 HOH HOH . D 3 HOH A 3 312 312 HOH HOH . D 3 HOH A 4 313 313 HOH HOH . D 3 HOH A 5 318 318 HOH HOH . D 3 HOH A 6 319 319 HOH HOH . D 3 HOH A 7 320 320 HOH HOH . D 3 HOH A 8 321 321 HOH HOH . D 3 HOH A 9 322 322 HOH HOH . D 3 HOH A 10 323 323 HOH HOH . D 3 HOH A 11 326 326 HOH HOH . D 3 HOH A 12 327 327 HOH HOH . D 3 HOH A 13 329 329 HOH HOH . D 3 HOH A 14 337 337 HOH HOH . D 3 HOH A 15 338 338 HOH HOH . D 3 HOH A 16 339 339 HOH HOH . D 3 HOH A 17 340 340 HOH HOH . D 3 HOH A 18 345 345 HOH HOH . D 3 HOH A 19 346 346 HOH HOH . D 3 HOH A 20 350 350 HOH HOH . D 3 HOH A 21 352 352 HOH HOH . D 3 HOH A 22 354 354 HOH HOH . D 3 HOH A 23 355 355 HOH HOH . D 3 HOH A 24 356 356 HOH HOH . D 3 HOH A 25 358 358 HOH HOH . D 3 HOH A 26 359 359 HOH HOH . D 3 HOH A 27 360 360 HOH HOH . D 3 HOH A 28 361 361 HOH HOH . D 3 HOH A 29 364 364 HOH HOH . D 3 HOH A 30 365 365 HOH HOH . D 3 HOH A 31 368 368 HOH HOH . D 3 HOH A 32 369 369 HOH HOH . D 3 HOH A 33 371 371 HOH HOH . D 3 HOH A 34 372 372 HOH HOH . D 3 HOH A 35 373 373 HOH HOH . D 3 HOH A 36 381 381 HOH HOH . D 3 HOH A 37 382 382 HOH HOH . D 3 HOH A 38 385 385 HOH HOH . D 3 HOH A 39 391 391 HOH HOH . D 3 HOH A 40 394 394 HOH HOH . D 3 HOH A 41 396 396 HOH HOH . D 3 HOH A 42 398 398 HOH HOH . D 3 HOH A 43 399 399 HOH HOH . D 3 HOH A 44 403 403 HOH HOH . D 3 HOH A 45 406 406 HOH HOH . D 3 HOH A 46 407 407 HOH HOH . D 3 HOH A 47 408 408 HOH HOH . D 3 HOH A 48 409 409 HOH HOH . D 3 HOH A 49 416 416 HOH HOH . D 3 HOH A 50 418 418 HOH HOH . D 3 HOH A 51 421 421 HOH HOH . D 3 HOH A 52 426 426 HOH HOH . D 3 HOH A 53 430 430 HOH HOH . D 3 HOH A 54 433 433 HOH HOH . D 3 HOH A 55 434 434 HOH HOH . E 3 HOH B 1 302 302 HOH HOH . E 3 HOH B 2 304 304 HOH HOH . E 3 HOH B 3 305 305 HOH HOH . E 3 HOH B 4 306 306 HOH HOH . E 3 HOH B 5 307 307 HOH HOH . E 3 HOH B 6 308 308 HOH HOH . E 3 HOH B 7 309 309 HOH HOH . E 3 HOH B 8 310 310 HOH HOH . E 3 HOH B 9 311 311 HOH HOH . E 3 HOH B 10 314 314 HOH HOH . E 3 HOH B 11 315 315 HOH HOH . E 3 HOH B 12 316 316 HOH HOH . E 3 HOH B 13 317 317 HOH HOH . E 3 HOH B 14 324 324 HOH HOH . E 3 HOH B 15 325 325 HOH HOH . E 3 HOH B 16 328 328 HOH HOH . E 3 HOH B 17 330 330 HOH HOH . E 3 HOH B 18 331 331 HOH HOH . E 3 HOH B 19 332 332 HOH HOH . E 3 HOH B 20 333 333 HOH HOH . E 3 HOH B 21 334 334 HOH HOH . E 3 HOH B 22 335 335 HOH HOH . E 3 HOH B 23 336 336 HOH HOH . E 3 HOH B 24 341 341 HOH HOH . E 3 HOH B 25 342 342 HOH HOH . E 3 HOH B 26 343 343 HOH HOH . E 3 HOH B 27 344 344 HOH HOH . E 3 HOH B 28 347 347 HOH HOH . E 3 HOH B 29 348 348 HOH HOH . E 3 HOH B 30 349 349 HOH HOH . E 3 HOH B 31 351 351 HOH HOH . E 3 HOH B 32 353 353 HOH HOH . E 3 HOH B 33 357 357 HOH HOH . E 3 HOH B 34 362 362 HOH HOH . E 3 HOH B 35 363 363 HOH HOH . E 3 HOH B 36 367 367 HOH HOH . E 3 HOH B 37 370 370 HOH HOH . E 3 HOH B 38 374 374 HOH HOH . E 3 HOH B 39 375 375 HOH HOH . E 3 HOH B 40 376 376 HOH HOH . E 3 HOH B 41 377 377 HOH HOH . E 3 HOH B 42 378 378 HOH HOH . E 3 HOH B 43 379 379 HOH HOH . E 3 HOH B 44 380 380 HOH HOH . E 3 HOH B 45 383 383 HOH HOH . E 3 HOH B 46 384 384 HOH HOH . E 3 HOH B 47 386 386 HOH HOH . E 3 HOH B 48 387 387 HOH HOH . E 3 HOH B 49 388 388 HOH HOH . E 3 HOH B 50 389 389 HOH HOH . E 3 HOH B 51 390 390 HOH HOH . E 3 HOH B 52 392 392 HOH HOH . E 3 HOH B 53 393 393 HOH HOH . E 3 HOH B 54 395 395 HOH HOH . E 3 HOH B 55 397 397 HOH HOH . E 3 HOH B 56 400 400 HOH HOH . E 3 HOH B 57 401 401 HOH HOH . E 3 HOH B 58 402 402 HOH HOH . E 3 HOH B 59 404 404 HOH HOH . E 3 HOH B 60 405 405 HOH HOH . E 3 HOH B 61 410 410 HOH HOH . E 3 HOH B 62 411 411 HOH HOH . E 3 HOH B 63 412 412 HOH HOH . E 3 HOH B 64 413 413 HOH HOH . E 3 HOH B 65 414 414 HOH HOH . E 3 HOH B 66 415 415 HOH HOH . E 3 HOH B 67 417 417 HOH HOH . E 3 HOH B 68 419 419 HOH HOH . E 3 HOH B 69 420 420 HOH HOH . E 3 HOH B 70 422 422 HOH HOH . E 3 HOH B 71 423 423 HOH HOH . E 3 HOH B 72 424 424 HOH HOH . E 3 HOH B 73 425 425 HOH HOH . E 3 HOH B 74 427 427 HOH HOH . E 3 HOH B 75 428 428 HOH HOH . E 3 HOH B 76 429 429 HOH HOH . E 3 HOH B 77 431 431 HOH HOH . E 3 HOH B 78 432 432 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BEG . . . C 2 9.764 24.084 2.234 1 16.71 ? C01 BEG 501 A 1 HETATM 2 C C02 BEG . . . C 2 9.044 25.251 1.867 1 17.16 ? C02 BEG 501 A 1 HETATM 3 C C03 BEG . . . C 2 7.641 25.363 2.003 1 18.56 ? C03 BEG 501 A 1 HETATM 4 C C04 BEG . . . C 2 6.904 24.272 2.523 1 17.81 ? C04 BEG 501 A 1 HETATM 5 C C05 BEG . . . C 2 7.585 23.088 2.893 1 17.98 ? C05 BEG 501 A 1 HETATM 6 C C06 BEG . . . C 2 8.994 22.996 2.747 1 17.88 ? C06 BEG 501 A 1 HETATM 7 C C07 BEG . . . C 2 16.298 22.149 8.773 1 19.56 ? C07 BEG 501 A 1 HETATM 8 C C08 BEG . . . C 2 15.57 21.13 9.459 1 20.75 ? C08 BEG 501 A 1 HETATM 9 C C09 BEG . . . C 2 16.175 19.934 9.922 1 20.57 ? C09 BEG 501 A 1 HETATM 10 C C10 BEG . . . C 2 17.561 19.729 9.711 1 20.37 ? C10 BEG 501 A 1 HETATM 11 C C11 BEG . . . C 2 18.315 20.725 9.045 1 20.47 ? C11 BEG 501 A 1 HETATM 12 C C12 BEG . . . C 2 17.69 21.914 8.586 1 20.23 ? C12 BEG 501 A 1 HETATM 13 C C13 BEG . . . C 2 15.56 23.358 8.195 1 19.5 ? C13 BEG 501 A 1 HETATM 14 O O14 BEG . . . C 2 14.526 23.015 7.272 1 18.69 ? O14 BEG 501 A 1 HETATM 15 C C23 BEG . . . C 2 11.287 24.077 2.148 1 17.57 ? C23 BEG 501 A 1 HETATM 16 O O22 BEG . . . C 2 11.92 23.554 3.313 1 17.43 ? O22 BEG 501 A 1 HETATM 17 C C15 BEG . . . C 2 15.031 22.699 5.968 1 16.68 ? C15 BEG 501 A 1 HETATM 18 C C16 BEG . . . C 2 13.991 23.019 4.924 1 17.37 ? C16 BEG 501 A 1 HETATM 19 C C17 BEG . . . C 2 13.502 24.425 5.006 1 17.54 ? C17 BEG 501 A 1 HETATM 20 O O24 BEG . . . C 2 14.483 25.178 4.305 1 17.08 ? O24 BEG 501 A 1 HETATM 21 C C18 BEG . . . C 2 12.117 24.538 4.353 1 16.43 ? C18 BEG 501 A 1 HETATM 22 C C19 BEG . . . C 2 10.944 24.485 5.324 1 15.74 ? C19 BEG 501 A 1 HETATM 23 O O20 BEG . . . C 2 10.696 23.492 6.004 1 15.85 ? O20 BEG 501 A 1 HETATM 24 N N21 BEG . . . C 2 10.14 25.606 5.373 1 13.93 ? N21 BEG 501 A 1 HETATM 25 C C25 BEG . . . C 2 15.14 21.202 5.836 1 15.73 ? C25 BEG 501 A 1 HETATM 26 O O26 BEG . . . C 2 14.193 20.464 6.087 1 16.5 ? O26 BEG 501 A 1 HETATM 27 N N27 BEG . . . C 2 16.358 20.692 5.436 1 13.98 ? N27 BEG 501 A 1 HETATM 28 C C28 BEG . . . C 2 16.62 19.277 5.261 1 13.6 ? C28 BEG 501 A 1 HETATM 29 C C29 BEG . . . C 2 16.571 18.847 3.82 1 14.3 ? C29 BEG 501 A 1 HETATM 30 C C30 BEG . . . C 2 17.534 17.849 3.551 1 14.91 ? C30 BEG 501 A 1 HETATM 31 C C31 BEG . . . C 2 15.732 19.314 2.777 1 14.61 ? C31 BEG 501 A 1 HETATM 32 C C32 BEG . . . C 2 15.863 18.764 1.468 1 15.46 ? C32 BEG 501 A 1 HETATM 33 C C33 BEG . . . C 2 16.833 17.755 1.212 1 15.55 ? C33 BEG 501 A 1 HETATM 34 C C34 BEG . . . C 2 18.018 18.781 5.673 1 13.85 ? C34 BEG 501 A 1 HETATM 35 O O35 BEG . . . C 2 18.937 19.823 5.379 1 13.1 ? O35 BEG 501 A 1 HETATM 36 C C36 BEG . . . C 2 17.679 17.289 2.256 1 15.32 ? C36 BEG 501 A 1 HETATM 37 C C37 BEG . . . C 2 18.309 17.538 4.794 1 14.18 ? C37 BEG 501 A 1 HETATM 38 C C38 BEG . . . C 2 8.968 25.778 6.216 1 14.18 ? C38 BEG 501 A 1 HETATM 39 C C39 BEG . . . C 2 9.256 26.507 7.503 1 14.71 ? C39 BEG 501 A 1 HETATM 40 C C40 BEG . . . C 2 8.181 27.361 7.86 1 15.26 ? C40 BEG 501 A 1 HETATM 41 C C41 BEG . . . C 2 10.408 26.446 8.332 1 15.21 ? C41 BEG 501 A 1 HETATM 42 C C42 BEG . . . C 2 10.467 27.24 9.518 1 16.49 ? C42 BEG 501 A 1 HETATM 43 C C43 BEG . . . C 2 9.377 28.089 9.863 1 16.6 ? C43 BEG 501 A 1 HETATM 44 C C44 BEG . . . C 2 7.849 26.663 5.625 1 14.38 ? C44 BEG 501 A 1 HETATM 45 O O45 BEG . . . C 2 8.482 27.684 4.868 1 12.28 ? O45 BEG 501 A 1 HETATM 46 C C46 BEG . . . C 2 8.224 28.156 9.035 1 16.17 ? C46 BEG 501 A 1 HETATM 47 C C47 BEG . . . C 2 7.093 27.273 6.832 1 14.54 ? C47 BEG 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 47 #