data_1D4J # _model_server_result.job_id dJNMgOrMruFOjH1brfdHew _model_server_result.datetime_utc '2025-02-27 02:48:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1D4J # _exptl.entry_id 1D4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.132 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,5-DIBENZYLOXY-3,4-DIHYDROXY-HEXANEDIOIC ACID 2-CHLORO-6-FLUORO-BENZYLAMIDE (2-HYDROXY-INDAN-1- YL)-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4J _cell.length_a 58.779 _cell.length_b 86.523 _cell.length_c 46.575 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H36 Cl F N2 O7' _chem_comp.formula_weight 663.132 _chem_comp.id MSC _chem_comp.mon_nstd_flag . _chem_comp.name '2,5-DIBENZYLOXY-3,4-DIHYDROXY-HEXANEDIOIC ACID 2-CHLORO-6-FLUORO-BENZYLAMIDE (2-HYDROXY-INDAN-1- YL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INHIBITOR MSL370' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 MSC sing 237 n n C01 C03 MSC sing 238 n n C01 C31 MSC sing 239 n n C01 H011 MSC sing 240 n n O02 H021 MSC sing 241 n n C03 O04 MSC sing 242 n n C03 C12 MSC sing 243 n n C03 H031 MSC sing 244 n n O04 C05 MSC sing 245 n n C05 C06 MSC sing 246 n n C05 H051 MSC sing 247 n n C05 H052 MSC sing 248 n n C06 C07 MSC doub 249 n y C06 C11 MSC sing 250 n y C07 C08 MSC sing 251 n y C07 H071 MSC sing 252 n n C08 C09 MSC doub 253 n y C08 H081 MSC sing 254 n n C09 C10 MSC sing 255 n y C09 H091 MSC sing 256 n n C10 C11 MSC doub 257 n y C10 H101 MSC sing 258 n n C11 H111 MSC sing 259 n n C12 O13 MSC doub 260 n n C12 N14 MSC sing 261 n n N14 C15 MSC sing 262 n n N14 H141 MSC sing 263 n n C15 C16 MSC sing 264 n n C15 C23 MSC sing 265 n n C15 H151 MSC sing 266 n n C16 C17 MSC doub 267 n y C16 C21 MSC sing 268 n y C17 C18 MSC sing 269 n y C17 H171 MSC sing 270 n n C18 C19 MSC doub 271 n y C18 H181 MSC sing 272 n n C19 C20 MSC sing 273 n y C19 H191 MSC sing 274 n n C20 C21 MSC doub 275 n y C20 H201 MSC sing 276 n n C21 C22 MSC sing 277 n n C22 C23 MSC sing 278 n n C22 H221 MSC sing 279 n n C22 H222 MSC sing 280 n n C23 O24 MSC sing 281 n n C23 H231 MSC sing 282 n n O24 H241 MSC sing 283 n n C31 O32 MSC sing 284 n n C31 C33 MSC sing 285 n n C31 H311 MSC sing 286 n n O32 H321 MSC sing 287 n n C33 O34 MSC sing 288 n n C33 C42 MSC sing 289 n n C33 H331 MSC sing 290 n n O34 C35 MSC sing 291 n n C35 C36 MSC sing 292 n n C35 H351 MSC sing 293 n n C35 H352 MSC sing 294 n n C36 C37 MSC doub 295 n y C36 C41 MSC sing 296 n y C37 C38 MSC sing 297 n y C37 H371 MSC sing 298 n n C38 C39 MSC doub 299 n y C38 H381 MSC sing 300 n n C39 C40 MSC sing 301 n y C39 H391 MSC sing 302 n n C40 C41 MSC doub 303 n y C40 H401 MSC sing 304 n n C41 H411 MSC sing 305 n n C42 O43 MSC doub 306 n n C42 N44 MSC sing 307 n n N44 C45 MSC sing 308 n n N44 H441 MSC sing 309 n n C45 C46 MSC sing 310 n n C45 H451 MSC sing 311 n n C45 H452 MSC sing 312 n n C46 C47 MSC doub 313 n y C46 C51 MSC sing 314 n y C47 C48 MSC sing 315 n y C47 F MSC sing 316 n n C48 C49 MSC doub 317 n y C48 H481 MSC sing 318 n n C49 C50 MSC sing 319 n y C49 H491 MSC sing 320 n n C50 C51 MSC doub 321 n y C50 H501 MSC sing 322 n n C51 CL MSC sing 323 n n # _atom_sites.entry_id 1D4J _atom_sites.fract_transf_matrix[1][1] 0.017013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MSC B 1 501 501 MSC MSB . D 3 HOH A 1 301 301 HOH HOH . D 3 HOH A 2 303 303 HOH HOH . D 3 HOH A 3 306 306 HOH HOH . D 3 HOH A 4 307 307 HOH HOH . D 3 HOH A 5 310 310 HOH HOH . D 3 HOH A 6 314 314 HOH HOH . D 3 HOH A 7 318 318 HOH HOH . D 3 HOH A 8 319 319 HOH HOH . D 3 HOH A 9 320 320 HOH HOH . D 3 HOH A 10 323 323 HOH HOH . D 3 HOH A 11 325 325 HOH HOH . D 3 HOH A 12 326 326 HOH HOH . D 3 HOH A 13 327 327 HOH HOH . D 3 HOH A 14 333 333 HOH HOH . D 3 HOH A 15 334 334 HOH HOH . D 3 HOH A 16 336 336 HOH HOH . D 3 HOH A 17 337 337 HOH HOH . D 3 HOH A 18 338 338 HOH HOH . D 3 HOH A 19 342 342 HOH HOH . D 3 HOH A 20 344 344 HOH HOH . D 3 HOH A 21 351 351 HOH HOH . D 3 HOH A 22 352 352 HOH HOH . D 3 HOH A 23 357 357 HOH HOH . D 3 HOH A 24 358 358 HOH HOH . D 3 HOH A 25 361 361 HOH HOH . D 3 HOH A 26 363 363 HOH HOH . D 3 HOH A 27 364 364 HOH HOH . D 3 HOH A 28 367 367 HOH HOH . D 3 HOH A 29 369 369 HOH HOH . D 3 HOH A 30 371 371 HOH HOH . D 3 HOH A 31 376 376 HOH HOH . D 3 HOH A 32 377 377 HOH HOH . D 3 HOH A 33 380 380 HOH HOH . D 3 HOH A 34 381 381 HOH HOH . D 3 HOH A 35 382 382 HOH HOH . D 3 HOH A 36 384 384 HOH HOH . D 3 HOH A 37 388 388 HOH HOH . D 3 HOH A 38 391 391 HOH HOH . D 3 HOH A 39 392 392 HOH HOH . E 3 HOH B 1 302 302 HOH HOH . E 3 HOH B 2 304 304 HOH HOH . E 3 HOH B 3 305 305 HOH HOH . E 3 HOH B 4 308 308 HOH HOH . E 3 HOH B 5 309 309 HOH HOH . E 3 HOH B 6 311 311 HOH HOH . E 3 HOH B 7 312 312 HOH HOH . E 3 HOH B 8 313 313 HOH HOH . E 3 HOH B 9 315 315 HOH HOH . E 3 HOH B 10 316 316 HOH HOH . E 3 HOH B 11 317 317 HOH HOH . E 3 HOH B 12 321 321 HOH HOH . E 3 HOH B 13 322 322 HOH HOH . E 3 HOH B 14 324 324 HOH HOH . E 3 HOH B 15 328 328 HOH HOH . E 3 HOH B 16 329 329 HOH HOH . E 3 HOH B 17 330 330 HOH HOH . E 3 HOH B 18 331 331 HOH HOH . E 3 HOH B 19 332 332 HOH HOH . E 3 HOH B 20 335 335 HOH HOH . E 3 HOH B 21 339 339 HOH HOH . E 3 HOH B 22 340 340 HOH HOH . E 3 HOH B 23 341 341 HOH HOH . E 3 HOH B 24 343 343 HOH HOH . E 3 HOH B 25 345 345 HOH HOH . E 3 HOH B 26 346 346 HOH HOH . E 3 HOH B 27 347 347 HOH HOH . E 3 HOH B 28 348 348 HOH HOH . E 3 HOH B 29 349 349 HOH HOH . E 3 HOH B 30 350 350 HOH HOH . E 3 HOH B 31 353 353 HOH HOH . E 3 HOH B 32 354 354 HOH HOH . E 3 HOH B 33 355 355 HOH HOH . E 3 HOH B 34 356 356 HOH HOH . E 3 HOH B 35 359 359 HOH HOH . E 3 HOH B 36 360 360 HOH HOH . E 3 HOH B 37 362 362 HOH HOH . E 3 HOH B 38 365 365 HOH HOH . E 3 HOH B 39 366 366 HOH HOH . E 3 HOH B 40 368 368 HOH HOH . E 3 HOH B 41 370 370 HOH HOH . E 3 HOH B 42 372 372 HOH HOH . E 3 HOH B 43 373 373 HOH HOH . E 3 HOH B 44 374 374 HOH HOH . E 3 HOH B 45 375 375 HOH HOH . E 3 HOH B 46 378 378 HOH HOH . E 3 HOH B 47 379 379 HOH HOH . E 3 HOH B 48 383 383 HOH HOH . E 3 HOH B 49 385 385 HOH HOH . E 3 HOH B 50 386 386 HOH HOH . E 3 HOH B 51 387 387 HOH HOH . E 3 HOH B 52 389 389 HOH HOH . E 3 HOH B 53 390 390 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 MSC . . . C 2 13.786 23.158 4.998 1 22.4 ? C01 MSC 501 B 1 HETATM 2 O O02 MSC . . . C 2 14.335 22.926 3.674 1 22.36 ? O02 MSC 501 B 1 HETATM 3 C C03 MSC . . . C 2 14.79 22.796 6.068 1 22.06 ? C03 MSC 501 B 1 HETATM 4 O O04 MSC . . . C 2 14.251 23.057 7.39 1 23.36 ? O04 MSC 501 B 1 HETATM 5 C C05 MSC . . . C 2 15.263 23.502 8.323 1 24.59 ? C05 MSC 501 B 1 HETATM 6 C C06 MSC . . . C 2 16.19 22.394 8.811 1 24.9 ? C06 MSC 501 B 1 HETATM 7 C C07 MSC . . . C 2 15.645 21.245 9.515 1 25.53 ? C07 MSC 501 B 1 HETATM 8 C C08 MSC . . . C 2 16.51 20.15 9.881 1 25.58 ? C08 MSC 501 B 1 HETATM 9 C C09 MSC . . . C 2 17.912 20.202 9.555 1 25.31 ? C09 MSC 501 B 1 HETATM 10 C C10 MSC . . . C 2 18.458 21.346 8.868 1 25.51 ? C10 MSC 501 B 1 HETATM 11 C C11 MSC . . . C 2 17.602 22.439 8.498 1 25.15 ? C11 MSC 501 B 1 HETATM 12 C C12 MSC . . . C 2 15.012 21.317 5.904 1 21.36 ? C12 MSC 501 B 1 HETATM 13 O O13 MSC . . . C 2 14.088 20.523 6.102 1 21.37 ? O13 MSC 501 B 1 HETATM 14 N N14 MSC . . . C 2 16.278 20.878 5.55 1 20.76 ? N14 MSC 501 B 1 HETATM 15 C C15 MSC . . . C 2 16.596 19.471 5.381 1 20.21 ? C15 MSC 501 B 1 HETATM 16 C C16 MSC . . . C 2 16.549 19.009 3.943 1 20.2 ? C16 MSC 501 B 1 HETATM 17 C C17 MSC . . . C 2 15.685 19.426 2.867 1 19.67 ? C17 MSC 501 B 1 HETATM 18 C C18 MSC . . . C 2 15.842 18.829 1.56 1 21.16 ? C18 MSC 501 B 1 HETATM 19 C C19 MSC . . . C 2 16.861 17.833 1.339 1 21.15 ? C19 MSC 501 B 1 HETATM 20 C C20 MSC . . . C 2 17.734 17.419 2.405 1 20.25 ? C20 MSC 501 B 1 HETATM 21 C C21 MSC . . . C 2 17.566 18.017 3.7 1 20.93 ? C21 MSC 501 B 1 HETATM 22 C C22 MSC . . . C 2 18.352 17.767 4.947 1 20.13 ? C22 MSC 501 B 1 HETATM 23 C C23 MSC . . . C 2 18.025 19.036 5.77 1 20.53 ? C23 MSC 501 B 1 HETATM 24 O O24 MSC . . . C 2 18.924 20.096 5.438 1 19.65 ? O24 MSC 501 B 1 HETATM 25 C C31 MSC . . . C 2 13.303 24.597 5.08 1 22.99 ? C31 MSC 501 B 1 HETATM 26 O O32 MSC . . . C 2 14.344 25.434 4.504 1 22.77 ? O32 MSC 501 B 1 HETATM 27 C C33 MSC . . . C 2 11.972 24.849 4.369 1 22.78 ? C33 MSC 501 B 1 HETATM 28 O O34 MSC . . . C 2 11.803 23.951 3.247 1 23.57 ? O34 MSC 501 B 1 HETATM 29 C C35 MSC . . . C 2 11.093 24.549 2.142 1 24.61 ? C35 MSC 501 B 1 HETATM 30 C C36 MSC . . . C 2 9.586 24.455 2.269 1 24.88 ? C36 MSC 501 B 1 HETATM 31 C C37 MSC . . . C 2 8.763 25.617 2.011 1 25.8 ? C37 MSC 501 B 1 HETATM 32 C C38 MSC . . . C 2 7.343 25.55 2.225 1 26.02 ? C38 MSC 501 B 1 HETATM 33 C C39 MSC . . . C 2 6.743 24.328 2.685 1 26.21 ? C39 MSC 501 B 1 HETATM 34 C C40 MSC . . . C 2 7.552 23.165 2.933 1 25.93 ? C40 MSC 501 B 1 HETATM 35 C C41 MSC . . . C 2 8.97 23.22 2.726 1 25.61 ? C41 MSC 501 B 1 HETATM 36 C C42 MSC . . . C 2 10.86 24.621 5.383 1 22.67 ? C42 MSC 501 B 1 HETATM 37 O O43 MSC . . . C 2 10.751 23.547 5.979 1 22.25 ? O43 MSC 501 B 1 HETATM 38 N N44 MSC . . . C 2 9.925 25.62 5.569 1 23.06 ? N44 MSC 501 B 1 HETATM 39 C C45 MSC . . . C 2 8.825 25.487 6.516 1 25.36 ? C45 MSC 501 B 1 HETATM 40 C C46 MSC . . . C 2 8.41 26.651 7.279 1 27.39 ? C46 MSC 501 B 1 HETATM 41 C C47 MSC . . . C 2 7.144 27.295 7.009 1 27.9 ? C47 MSC 501 B 1 HETATM 42 C C48 MSC . . . C 2 6.763 28.477 7.756 1 28.82 ? C48 MSC 501 B 1 HETATM 43 C C49 MSC . . . C 2 7.641 29.011 8.765 1 28.68 ? C49 MSC 501 B 1 HETATM 44 C C50 MSC . . . C 2 8.899 28.376 9.038 1 28.66 ? C50 MSC 501 B 1 HETATM 45 C C51 MSC . . . C 2 9.282 27.193 8.292 1 28.83 ? C51 MSC 501 B 1 HETATM 46 CL CL MSC . . . C 2 11.059 26.281 8.673 1 32.08 ? CL MSC 501 B 1 HETATM 47 F F MSC . . . C 2 6.339 26.821 6.063 1 28.57 ? F MSC 501 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #