data_1D4L # _model_server_result.job_id TSAvxWyZCKrGI_SZSIs_iQ _model_server_result.datetime_utc '2024-12-18 08:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 1D4L # _exptl.entry_id 1D4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.812 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(10S,13S,1'R)-13-[1'-HYDROXY-2'-(N-P-AMINOBENZENESULFONYL-1''-AMINO-3''-METHYLBUTYL)ETHYL]-8,11-DIOXO-10-ISOPROPYL-2-OXA-9,12-DIAZABICYCLO [13.2.2]NONADECA-15,17,18-TRIENE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4L _cell.length_a 51.44 _cell.length_b 58.77 _cell.length_c 61.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 B C ILE 66 B ILE 66 1_555 B N ABA 67 B ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C ABA 67 B ABA 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C GLY 94 B GLY 94 1_555 B N ABA 95 B ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 B C ABA 95 B ABA 95 1_555 B N THR 96 B THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C32 H48 N4 O6 S' _chem_comp.formula_weight 616.812 _chem_comp.id PI9 _chem_comp.mon_nstd_flag . _chem_comp.name "(10S,13S,1'R)-13-[1'-HYDROXY-2'-(N-P-AMINOBENZENESULFONYL-1''-AMINO-3''-METHYLBUTYL)ETHYL]-8,11-DIOXO-10-ISOPROPYL-2-OXA-9,12-DIAZABICYCLO [13.2.2]NONADECA-15,17,18-TRIENE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D4L _atom_sites.fract_transf_matrix[1][1] 0.01944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 502 502 SO4 SO4 . D 2 SO4 A 1 503 503 SO4 SO4 . E 3 PI9 A 1 201 201 PI9 GLC . F 2 SO4 B 1 501 501 SO4 SO4 . G 4 HOH A 1 301 301 HOH HOH . G 4 HOH A 2 302 302 HOH HOH . G 4 HOH A 3 303 303 HOH HOH . G 4 HOH A 4 304 304 HOH HOH . G 4 HOH A 5 305 305 HOH HOH . G 4 HOH A 6 306 306 HOH HOH . G 4 HOH A 7 307 307 HOH HOH . G 4 HOH A 8 308 308 HOH HOH . G 4 HOH A 9 309 309 HOH HOH . G 4 HOH A 10 310 310 HOH HOH . G 4 HOH A 11 311 311 HOH HOH . G 4 HOH A 12 312 312 HOH HOH . G 4 HOH A 13 322 322 HOH HOH . G 4 HOH A 14 323 323 HOH HOH . G 4 HOH A 15 324 324 HOH HOH . G 4 HOH A 16 325 325 HOH HOH . G 4 HOH A 17 326 326 HOH HOH . G 4 HOH A 18 327 327 HOH HOH . G 4 HOH A 19 328 328 HOH HOH . G 4 HOH A 20 333 333 HOH HOH . G 4 HOH A 21 334 334 HOH HOH . G 4 HOH A 22 337 337 HOH HOH . G 4 HOH A 23 338 338 HOH HOH . G 4 HOH A 24 339 339 HOH HOH . G 4 HOH A 25 340 340 HOH HOH . G 4 HOH A 26 341 341 HOH HOH . G 4 HOH A 27 345 345 HOH HOH . G 4 HOH A 28 346 346 HOH HOH . G 4 HOH A 29 348 348 HOH HOH . G 4 HOH A 30 350 350 HOH HOH . G 4 HOH A 31 351 351 HOH HOH . G 4 HOH A 32 352 352 HOH HOH . G 4 HOH A 33 353 353 HOH HOH . G 4 HOH A 34 358 358 HOH HOH . G 4 HOH A 35 363 363 HOH HOH . G 4 HOH A 36 366 366 HOH HOH . G 4 HOH A 37 367 367 HOH HOH . G 4 HOH A 38 368 368 HOH HOH . G 4 HOH A 39 369 369 HOH HOH . G 4 HOH A 40 370 370 HOH HOH . G 4 HOH A 41 376 376 HOH HOH . G 4 HOH A 42 377 377 HOH HOH . G 4 HOH A 43 378 378 HOH HOH . G 4 HOH A 44 379 379 HOH HOH . G 4 HOH A 45 381 381 HOH HOH . G 4 HOH A 46 383 383 HOH HOH . G 4 HOH A 47 385 385 HOH HOH . G 4 HOH A 48 386 386 HOH HOH . G 4 HOH A 49 387 387 HOH HOH . G 4 HOH A 50 389 389 HOH HOH . G 4 HOH A 51 390 390 HOH HOH . G 4 HOH A 52 391 391 HOH HOH . G 4 HOH A 53 392 392 HOH HOH . G 4 HOH A 54 393 393 HOH HOH . G 4 HOH A 55 394 394 HOH HOH . G 4 HOH A 56 395 395 HOH HOH . G 4 HOH A 57 396 396 HOH HOH . G 4 HOH A 58 397 397 HOH HOH . G 4 HOH A 59 399 399 HOH HOH . G 4 HOH A 60 400 400 HOH HOH . G 4 HOH A 61 409 409 HOH HOH . G 4 HOH A 62 411 411 HOH HOH . G 4 HOH A 63 412 412 HOH HOH . G 4 HOH A 64 417 417 HOH HOH . G 4 HOH A 65 418 418 HOH HOH . G 4 HOH A 66 419 419 HOH HOH . H 4 HOH B 1 313 313 HOH HOH . H 4 HOH B 2 314 314 HOH HOH . H 4 HOH B 3 315 315 HOH HOH . H 4 HOH B 4 316 316 HOH HOH . H 4 HOH B 5 317 317 HOH HOH . H 4 HOH B 6 318 318 HOH HOH . H 4 HOH B 7 319 319 HOH HOH . H 4 HOH B 8 320 320 HOH HOH . H 4 HOH B 9 321 321 HOH HOH . H 4 HOH B 10 329 329 HOH HOH . H 4 HOH B 11 330 330 HOH HOH . H 4 HOH B 12 331 331 HOH HOH . H 4 HOH B 13 332 332 HOH HOH . H 4 HOH B 14 335 335 HOH HOH . H 4 HOH B 15 336 336 HOH HOH . H 4 HOH B 16 342 342 HOH HOH . H 4 HOH B 17 343 343 HOH HOH . H 4 HOH B 18 344 344 HOH HOH . H 4 HOH B 19 347 347 HOH HOH . H 4 HOH B 20 349 349 HOH HOH . H 4 HOH B 21 354 354 HOH HOH . H 4 HOH B 22 355 355 HOH HOH . H 4 HOH B 23 356 356 HOH HOH . H 4 HOH B 24 357 357 HOH HOH . H 4 HOH B 25 359 359 HOH HOH . H 4 HOH B 26 360 360 HOH HOH . H 4 HOH B 27 361 361 HOH HOH . H 4 HOH B 28 362 362 HOH HOH . H 4 HOH B 29 364 364 HOH HOH . H 4 HOH B 30 365 365 HOH HOH . H 4 HOH B 31 371 371 HOH HOH . H 4 HOH B 32 372 372 HOH HOH . H 4 HOH B 33 373 373 HOH HOH . H 4 HOH B 34 374 374 HOH HOH . H 4 HOH B 35 375 375 HOH HOH . H 4 HOH B 36 380 380 HOH HOH . H 4 HOH B 37 382 382 HOH HOH . H 4 HOH B 38 384 384 HOH HOH . H 4 HOH B 39 388 388 HOH HOH . H 4 HOH B 40 398 398 HOH HOH . H 4 HOH B 41 401 401 HOH HOH . H 4 HOH B 42 402 402 HOH HOH . H 4 HOH B 43 403 403 HOH HOH . H 4 HOH B 44 404 404 HOH HOH . H 4 HOH B 45 405 405 HOH HOH . H 4 HOH B 46 406 406 HOH HOH . H 4 HOH B 47 407 407 HOH HOH . H 4 HOH B 48 408 408 HOH HOH . H 4 HOH B 49 410 410 HOH HOH . H 4 HOH B 50 413 413 HOH HOH . H 4 HOH B 51 414 414 HOH HOH . H 4 HOH B 52 415 415 HOH HOH . H 4 HOH B 53 416 416 HOH HOH . H 4 HOH B 54 420 420 HOH HOH . H 4 HOH B 55 421 421 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 PI9 . . . E 3 5.151 4.324 9.072 1 18.34 ? C4 PI9 201 A 1 HETATM 2 C C5 PI9 . . . E 3 3.679 4.276 9.394 1 15.85 ? C5 PI9 201 A 1 HETATM 3 C C6 PI9 . . . E 3 3.4 3.617 10.733 1 12.79 ? C6 PI9 201 A 1 HETATM 4 O O1 PI9 . . . E 3 3.339 4.303 11.743 1 12.54 ? O1 PI9 201 A 1 HETATM 5 C C3 PI9 . . . E 3 5.469 3.248 8.075 1 22.78 ? C3 PI9 201 A 1 HETATM 6 C C2 PI9 . . . E 3 6.759 3.508 7.336 1 24.03 ? C2 PI9 201 A 1 HETATM 7 N N1 PI9 . . . E 3 3.285 2.29 10.758 1 12.66 ? N1 PI9 201 A 1 HETATM 8 C C7 PI9 . . . E 3 2.989 1.571 12.009 1 12.31 ? C7 PI9 201 A 1 HETATM 9 C C8 PI9 . . . E 3 1.63 0.835 11.909 1 13.68 ? C8 PI9 201 A 1 HETATM 10 C C10 PI9 . . . E 3 1.408 -0.03 13.137 1 14.07 ? C10 PI9 201 A 1 HETATM 11 C C9 PI9 . . . E 3 0.49 1.841 11.762 1 13.63 ? C9 PI9 201 A 1 HETATM 12 C C11 PI9 . . . E 3 4.076 0.584 12.474 1 13.11 ? C11 PI9 201 A 1 HETATM 13 O O2 PI9 . . . E 3 4.276 -0.477 11.862 1 12.65 ? O2 PI9 201 A 1 HETATM 14 N N2 PI9 . . . E 3 4.762 0.937 13.559 1 9.87 ? N2 PI9 201 A 1 HETATM 15 C C12 PI9 . . . E 3 5.828 0.083 14.13 1 10.07 ? C12 PI9 201 A 1 HETATM 16 C C13 PI9 . . . E 3 7.172 0.823 14.093 1 9.64 ? C13 PI9 201 A 1 HETATM 17 C C14 PI9 . . . E 3 7.503 1.394 12.725 1 11.42 ? C14 PI9 201 A 1 HETATM 18 C C15 PI9 . . . E 3 7.443 2.76 12.501 1 10.51 ? C15 PI9 201 A 1 HETATM 19 C C16 PI9 . . . E 3 7.732 3.291 11.283 1 13.66 ? C16 PI9 201 A 1 HETATM 20 C C19 PI9 . . . E 3 7.867 0.565 11.659 1 11.31 ? C19 PI9 201 A 1 HETATM 21 C C18 PI9 . . . E 3 8.158 1.09 10.422 1 10.83 ? C18 PI9 201 A 1 HETATM 22 C C17 PI9 . . . E 3 8.09 2.459 10.251 1 16.52 ? C17 PI9 201 A 1 HETATM 23 O O3 PI9 . . . E 3 8.387 3.054 9.062 1 21.94 ? O3 PI9 201 A 1 HETATM 24 C C1 PI9 . . . E 3 7.855 2.587 7.838 1 25.47 ? C1 PI9 201 A 1 HETATM 25 C C20 PI9 . . . E 3 5.482 -0.344 15.562 1 8.27 ? C20 PI9 201 A 1 HETATM 26 O O4 PI9 . . . E 3 5.531 0.792 16.426 1 9.87 ? O4 PI9 201 A 1 HETATM 27 C C21 PI9 . . . E 3 6.466 -1.397 16.079 1 11.67 ? C21 PI9 201 A 1 HETATM 28 N N3 PI9 . . . E 3 6.275 -2.717 15.453 1 15.19 ? N3 PI9 201 A 1 HETATM 29 C C22 PI9 . . . E 3 5.421 -3.63 16.226 1 17.13 ? C22 PI9 201 A 1 HETATM 30 C C23 PI9 . . . E 3 4.149 -3.713 15.402 1 19.44 ? C23 PI9 201 A 1 HETATM 31 C C24 PI9 . . . E 3 3.17 -4.792 15.875 1 20.84 ? C24 PI9 201 A 1 HETATM 32 C C26 PI9 . A . E 3 2.798 -4.516 17.324 0.5 20.28 ? C26 PI9 201 A 1 HETATM 33 C C26 PI9 . B . E 3 2.95 -5.743 14.727 0.5 19.44 ? C26 PI9 201 A 1 HETATM 34 C C25 PI9 . A . E 3 1.947 -4.843 14.968 0.5 20.14 ? C25 PI9 201 A 1 HETATM 35 C C25 PI9 . B . E 3 3.645 -5.549 17.11 0.5 17.69 ? C25 PI9 201 A 1 HETATM 36 S S PI9 . . . E 3 7.478 -3.332 14.51 1 15.37 ? S PI9 201 A 1 HETATM 37 O O6 PI9 . . . E 3 8.2 -2.234 13.874 1 14.29 ? O6 PI9 201 A 1 HETATM 38 O O5 PI9 . . . E 3 6.882 -4.189 13.494 1 16.61 ? O5 PI9 201 A 1 HETATM 39 C C27 PI9 . . . E 3 8.516 -4.196 15.448 1 14.31 ? C27 PI9 201 A 1 HETATM 40 C C32 PI9 . . . E 3 9.559 -3.547 16.084 1 16.19 ? C32 PI9 201 A 1 HETATM 41 C C28 PI9 . . . E 3 8.308 -5.544 15.701 1 13.59 ? C28 PI9 201 A 1 HETATM 42 C C31 PI9 . . . E 3 10.384 -4.214 16.974 1 15.5 ? C31 PI9 201 A 1 HETATM 43 C C29 PI9 . . . E 3 9.131 -6.226 16.598 1 17.16 ? C29 PI9 201 A 1 HETATM 44 C C30 PI9 . . . E 3 10.168 -5.549 17.229 1 16.35 ? C30 PI9 201 A 1 HETATM 45 N N4 PI9 . . . E 3 10.971 -6.175 18.159 1 21.16 ? N4 PI9 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 45 #