data_1D4S # _model_server_result.job_id 11K7SzfxiQWS03iwCjnfXA _model_server_result.datetime_utc '2024-11-29 00:28:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 1D4S # _exptl.entry_id 1D4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 602.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D4S _cell.length_a 58.73 _cell.length_b 86.68 _cell.length_c 46.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H33 F3 N2 O5 S' _chem_comp.formula_weight 602.664 _chem_comp.id TPV _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TIPRANAVIR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 TPV sing 306 n n O1 C6 TPV sing 307 n n C2 C3 TPV sing 308 n n C2 O7 TPV doub 309 n n C3 C4 TPV doub 310 n n C3 C20 TPV sing 311 n n C4 C5 TPV sing 312 n n C4 O8 TPV sing 313 n n C5 C6 TPV sing 314 n n C5 H51 TPV sing 315 n n C5 H52 TPV sing 316 n n C6 C9 TPV sing 317 n n C6 C12 TPV sing 318 n n O8 HO81 TPV sing 319 n n C9 C10 TPV sing 320 n n C9 H91 TPV sing 321 n n C9 H92 TPV sing 322 n n C10 C11 TPV sing 323 n n C10 H101 TPV sing 324 n n C10 H102 TPV sing 325 n n C11 H111 TPV sing 326 n n C11 H112 TPV sing 327 n n C11 H113 TPV sing 328 n n C12 C13 TPV sing 329 n n C12 H121 TPV sing 330 n n C12 H122 TPV sing 331 n n C13 C14 TPV sing 332 n n C13 H131 TPV sing 333 n n C13 H132 TPV sing 334 n n C14 C15 TPV doub 335 n y C14 C19 TPV sing 336 n y C15 C16 TPV sing 337 n y C15 H151 TPV sing 338 n n C16 C17 TPV doub 339 n y C16 H161 TPV sing 340 n n C17 C18 TPV sing 341 n y C17 H171 TPV sing 342 n n C18 C19 TPV doub 343 n y C18 H181 TPV sing 344 n n C19 H191 TPV sing 345 n n C20 C21 TPV sing 346 n n C20 C23 TPV sing 347 n n C20 H201 TPV sing 348 n n C21 C22 TPV sing 349 n n C21 H211 TPV sing 350 n n C21 H212 TPV sing 351 n n C22 H221 TPV sing 352 n n C22 H222 TPV sing 353 n n C22 H223 TPV sing 354 n n C23 C24 TPV doub 355 n y C23 C29 TPV sing 356 n y C24 C25 TPV sing 357 n y C24 H241 TPV sing 358 n n C25 C26 TPV doub 359 n y C25 H251 TPV sing 360 n n C26 C27 TPV sing 361 n y C26 H261 TPV sing 362 n n C27 N28 TPV sing 363 n n C27 C29 TPV doub 364 n y N28 S30 TPV sing 365 n n N28 H281 TPV sing 366 n n C29 H291 TPV sing 367 n n S30 O31 TPV doub 368 n n S30 O32 TPV doub 369 n n S30 C33 TPV sing 370 n n C33 N34 TPV doub 371 n y C33 C38 TPV sing 372 n y N34 C35 TPV sing 373 n y C35 C36 TPV doub 374 n y C35 H351 TPV sing 375 n n C36 C37 TPV sing 376 n y C36 C39 TPV sing 377 n n C37 C38 TPV doub 378 n y C37 H371 TPV sing 379 n n C38 H381 TPV sing 380 n n C39 F40 TPV sing 381 n n C39 F41 TPV sing 382 n n C39 F42 TPV sing 383 n n # _atom_sites.entry_id 1D4S _atom_sites.fract_transf_matrix[1][1] 0.017027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TPV A 1 201 1 TPV TIP . D 3 HOH A 1 202 2 HOH HOH . D 3 HOH A 2 203 4 HOH HOH . D 3 HOH A 3 204 6 HOH HOH . D 3 HOH A 4 205 7 HOH HOH . D 3 HOH A 5 206 10 HOH HOH . D 3 HOH A 6 207 12 HOH HOH . D 3 HOH A 7 208 14 HOH HOH . D 3 HOH A 8 209 15 HOH HOH . D 3 HOH A 9 210 16 HOH HOH . D 3 HOH A 10 211 17 HOH HOH . D 3 HOH A 11 212 20 HOH HOH . D 3 HOH A 12 213 21 HOH HOH . D 3 HOH A 13 214 22 HOH HOH . D 3 HOH A 14 215 25 HOH HOH . D 3 HOH A 15 216 26 HOH HOH . D 3 HOH A 16 217 27 HOH HOH . D 3 HOH A 17 218 28 HOH HOH . D 3 HOH A 18 219 29 HOH HOH . D 3 HOH A 19 220 30 HOH HOH . D 3 HOH A 20 221 33 HOH HOH . D 3 HOH A 21 222 38 HOH HOH . D 3 HOH A 22 223 41 HOH HOH . D 3 HOH A 23 224 42 HOH HOH . D 3 HOH A 24 225 44 HOH HOH . D 3 HOH A 25 226 47 HOH HOH . D 3 HOH A 26 227 48 HOH HOH . D 3 HOH A 27 228 51 HOH HOH . D 3 HOH A 28 229 53 HOH HOH . D 3 HOH A 29 230 54 HOH HOH . D 3 HOH A 30 231 60 HOH HOH . D 3 HOH A 31 232 61 HOH HOH . D 3 HOH A 32 233 63 HOH HOH . D 3 HOH A 33 234 65 HOH HOH . D 3 HOH A 34 235 66 HOH HOH . D 3 HOH A 35 236 69 HOH HOH . D 3 HOH A 36 237 76 HOH HOH . D 3 HOH A 37 238 77 HOH HOH . D 3 HOH A 38 239 79 HOH HOH . D 3 HOH A 39 240 82 HOH HOH . D 3 HOH A 40 241 85 HOH HOH . D 3 HOH A 41 242 86 HOH HOH . D 3 HOH A 42 243 87 HOH HOH . D 3 HOH A 43 244 88 HOH HOH . D 3 HOH A 44 245 91 HOH HOH . D 3 HOH A 45 246 93 HOH HOH . D 3 HOH A 46 247 94 HOH HOH . D 3 HOH A 47 248 95 HOH HOH . D 3 HOH A 48 249 97 HOH HOH . D 3 HOH A 49 250 103 HOH HOH . D 3 HOH A 50 251 104 HOH HOH . D 3 HOH A 51 252 108 HOH HOH . D 3 HOH A 52 253 109 HOH HOH . D 3 HOH A 53 254 110 HOH HOH . D 3 HOH A 54 255 111 HOH HOH . D 3 HOH A 55 256 112 HOH HOH . D 3 HOH A 56 257 115 HOH HOH . D 3 HOH A 57 258 118 HOH HOH . D 3 HOH A 58 259 119 HOH HOH . D 3 HOH A 59 260 120 HOH HOH . D 3 HOH A 60 261 124 HOH HOH . D 3 HOH A 61 262 127 HOH HOH . D 3 HOH A 62 263 129 HOH HOH . D 3 HOH A 63 264 130 HOH HOH . D 3 HOH A 64 265 131 HOH HOH . D 3 HOH A 65 266 132 HOH HOH . D 3 HOH A 66 267 133 HOH HOH . E 3 HOH B 1 100 1 HOH HOH . E 3 HOH B 2 101 3 HOH HOH . E 3 HOH B 3 102 5 HOH HOH . E 3 HOH B 4 103 8 HOH HOH . E 3 HOH B 5 104 9 HOH HOH . E 3 HOH B 6 105 11 HOH HOH . E 3 HOH B 7 106 13 HOH HOH . E 3 HOH B 8 107 18 HOH HOH . E 3 HOH B 9 108 19 HOH HOH . E 3 HOH B 10 109 23 HOH HOH . E 3 HOH B 11 110 24 HOH HOH . E 3 HOH B 12 111 31 HOH HOH . E 3 HOH B 13 112 32 HOH HOH . E 3 HOH B 14 113 34 HOH HOH . E 3 HOH B 15 114 35 HOH HOH . E 3 HOH B 16 115 36 HOH HOH . E 3 HOH B 17 116 37 HOH HOH . E 3 HOH B 18 117 39 HOH HOH . E 3 HOH B 19 118 40 HOH HOH . E 3 HOH B 20 119 43 HOH HOH . E 3 HOH B 21 120 45 HOH HOH . E 3 HOH B 22 121 46 HOH HOH . E 3 HOH B 23 122 49 HOH HOH . E 3 HOH B 24 123 50 HOH HOH . E 3 HOH B 25 124 52 HOH HOH . E 3 HOH B 26 125 55 HOH HOH . E 3 HOH B 27 126 56 HOH HOH . E 3 HOH B 28 127 57 HOH HOH . E 3 HOH B 29 128 58 HOH HOH . E 3 HOH B 30 129 59 HOH HOH . E 3 HOH B 31 130 62 HOH HOH . E 3 HOH B 32 131 64 HOH HOH . E 3 HOH B 33 132 67 HOH HOH . E 3 HOH B 34 133 68 HOH HOH . E 3 HOH B 35 134 70 HOH HOH . E 3 HOH B 36 135 71 HOH HOH . E 3 HOH B 37 136 72 HOH HOH . E 3 HOH B 38 137 73 HOH HOH . E 3 HOH B 39 138 74 HOH HOH . E 3 HOH B 40 139 75 HOH HOH . E 3 HOH B 41 140 78 HOH HOH . E 3 HOH B 42 141 80 HOH HOH . E 3 HOH B 43 142 81 HOH HOH . E 3 HOH B 44 143 83 HOH HOH . E 3 HOH B 45 144 84 HOH HOH . E 3 HOH B 46 145 89 HOH HOH . E 3 HOH B 47 146 90 HOH HOH . E 3 HOH B 48 147 92 HOH HOH . E 3 HOH B 49 148 96 HOH HOH . E 3 HOH B 50 149 98 HOH HOH . E 3 HOH B 51 150 99 HOH HOH . E 3 HOH B 52 151 100 HOH HOH . E 3 HOH B 53 152 101 HOH HOH . E 3 HOH B 54 153 102 HOH HOH . E 3 HOH B 55 154 105 HOH HOH . E 3 HOH B 56 155 106 HOH HOH . E 3 HOH B 57 156 107 HOH HOH . E 3 HOH B 58 157 113 HOH HOH . E 3 HOH B 59 158 114 HOH HOH . E 3 HOH B 60 159 116 HOH HOH . E 3 HOH B 61 160 117 HOH HOH . E 3 HOH B 62 161 121 HOH HOH . E 3 HOH B 63 162 122 HOH HOH . E 3 HOH B 64 163 123 HOH HOH . E 3 HOH B 65 164 125 HOH HOH . E 3 HOH B 66 165 126 HOH HOH . E 3 HOH B 67 166 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TPV . . . C 2 13.617 21.537 6.06 1 27.66 ? O1 TPV 201 A 1 HETATM 2 C C2 TPV . . . C 2 12.561 22.347 5.944 1 25.43 ? C2 TPV 201 A 1 HETATM 3 C C3 TPV . . . C 2 12.767 23.661 5.253 1 26.83 ? C3 TPV 201 A 1 HETATM 4 C C4 TPV . . . C 2 14.061 23.99 4.825 1 28.21 ? C4 TPV 201 A 1 HETATM 5 C C5 TPV . . . C 2 15.202 23.31 5.575 1 26.25 ? C5 TPV 201 A 1 HETATM 6 C C6 TPV . . . C 2 14.974 22.127 5.963 1 27.39 ? C6 TPV 201 A 1 HETATM 7 O O7 TPV . . . C 2 11.463 21.969 6.24 1 19.8 ? O7 TPV 201 A 1 HETATM 8 O O8 TPV . . . C 2 14.338 25.184 4.235 1 33.4 ? O8 TPV 201 A 1 HETATM 9 C C9 TPV . . . C 2 15.95 21.217 5.192 1 24.14 ? C9 TPV 201 A 1 HETATM 10 C C10 TPV . . . C 2 15.485 20.141 4.632 1 20 ? C10 TPV 201 A 1 HETATM 11 C C11 TPV . . . C 2 15.448 20.012 3.123 1 10.71 ? C11 TPV 201 A 1 HETATM 12 C C12 TPV . . . C 2 14.902 21.919 7.47 1 33.31 ? C12 TPV 201 A 1 HETATM 13 C C13 TPV . . . C 2 16.183 22.492 8.008 1 40.07 ? C13 TPV 201 A 1 HETATM 14 C C14 TPV . . . C 2 17.115 21.717 8.81 1 46.46 ? C14 TPV 201 A 1 HETATM 15 C C15 TPV . . . C 2 16.717 20.863 9.842 1 47.14 ? C15 TPV 201 A 1 HETATM 16 C C16 TPV . . . C 2 17.687 20.163 10.592 1 46.82 ? C16 TPV 201 A 1 HETATM 17 C C17 TPV . . . C 2 19.044 20.232 10.214 1 47.49 ? C17 TPV 201 A 1 HETATM 18 C C18 TPV . . . C 2 19.466 21.143 9.226 1 46.94 ? C18 TPV 201 A 1 HETATM 19 C C19 TPV . . . C 2 18.491 21.909 8.547 1 47.77 ? C19 TPV 201 A 1 HETATM 20 C C20 TPV . . . C 2 11.516 24.431 4.874 1 26.37 ? C20 TPV 201 A 1 HETATM 21 C C21 TPV . . . C 2 10.457 24.295 3.732 1 28.69 ? C21 TPV 201 A 1 HETATM 22 C C22 TPV . . . C 2 11.014 24.158 2.297 1 38.39 ? C22 TPV 201 A 1 HETATM 23 C C23 TPV . . . C 2 11.07 25.184 6.116 1 28.46 ? C23 TPV 201 A 1 HETATM 24 C C24 TPV . . . C 2 12.008 25.568 7.085 1 29.76 ? C24 TPV 201 A 1 HETATM 25 C C25 TPV . . . C 2 11.582 26.314 8.204 1 31.77 ? C25 TPV 201 A 1 HETATM 26 C C26 TPV . . . C 2 10.222 26.669 8.339 1 31.61 ? C26 TPV 201 A 1 HETATM 27 C C27 TPV . . . C 2 9.264 26.154 7.459 1 30.39 ? C27 TPV 201 A 1 HETATM 28 N N28 TPV . . . C 2 7.585 26.734 7.873 1 35.75 ? N28 TPV 201 A 1 HETATM 29 C C29 TPV . . . C 2 9.701 25.416 6.339 1 29.64 ? C29 TPV 201 A 1 HETATM 30 S S30 TPV . . . C 2 7.247 28.06 7.017 1 36.55 ? S30 TPV 201 A 1 HETATM 31 O O31 TPV . . . C 2 8.246 29.069 7.342 1 39.77 ? O31 TPV 201 A 1 HETATM 32 O O32 TPV . . . C 2 5.849 28.366 7.278 1 33.74 ? O32 TPV 201 A 1 HETATM 33 C C33 TPV . . . C 2 7.412 27.667 5.326 1 42.53 ? C33 TPV 201 A 1 HETATM 34 N N34 TPV . . . C 2 8.5 28.108 4.667 1 41.31 ? N34 TPV 201 A 1 HETATM 35 C C35 TPV . . . C 2 8.63 27.741 3.373 1 42.18 ? C35 TPV 201 A 1 HETATM 36 C C36 TPV . . . C 2 7.571 27.199 2.64 1 43.48 ? C36 TPV 201 A 1 HETATM 37 C C37 TPV . . . C 2 6.535 26.577 3.365 1 44.81 ? C37 TPV 201 A 1 HETATM 38 C C38 TPV . . . C 2 6.394 26.927 4.716 1 43.85 ? C38 TPV 201 A 1 HETATM 39 C C39 TPV . . . C 2 7.873 26.653 1.237 1 42.07 ? C39 TPV 201 A 1 HETATM 40 F F40 TPV . . . C 2 9.068 25.914 1.437 1 96.71 ? F40 TPV 201 A 1 HETATM 41 F F41 TPV . . . C 2 8.031 27.794 0.423 1 86.26 ? F41 TPV 201 A 1 HETATM 42 F F42 TPV . . . C 2 6.759 25.852 0.915 1 21.84 ? F42 TPV 201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #