data_1D5B # _model_server_result.job_id q1pS8DB-KRdIdmu1P5_LSg _model_server_result.datetime_utc '2025-03-03 20:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":212}' # _entry.id 1D5B # _exptl.entry_id 1D5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D5B _cell.length_a 77.42 _cell.length_b 80.67 _cell.length_c 134.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 C,D,H,I 2 1 A,B,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 147 B CYS 140 1_555 B SG CYS 203 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 147 H CYS 140 1_555 D SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD2 ASP 1 A ASP 1 1_555 E CD CD . A CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc2 A OE1 GLN 27 A GLN 27 1_555 E CD CD . A CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc3 A OE1 GLU 93 A GLU 93 1_555 E CD CD . A CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc4 E CD CD . A CD 212 1_555 C O HIS 198 L HIS 198 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc5 E CD CD . A CD 212 1_555 C O LEU 201 L LEU 201 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D5B _atom_sites.fract_transf_matrix[1][1] 0.012917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CD A 1 212 35 CD CD . F 4 HOH A 1 213 2 HOH TIP . F 4 HOH A 2 214 5 HOH TIP . F 4 HOH A 3 215 6 HOH TIP . F 4 HOH A 4 216 7 HOH TIP . F 4 HOH A 5 217 15 HOH TIP . F 4 HOH A 6 218 16 HOH TIP . F 4 HOH A 7 219 17 HOH TIP . F 4 HOH A 8 220 24 HOH TIP . F 4 HOH A 9 221 27 HOH TIP . F 4 HOH A 10 222 28 HOH TIP . F 4 HOH A 11 223 29 HOH TIP . F 4 HOH A 12 224 37 HOH TIP . F 4 HOH A 13 225 39 HOH TIP . F 4 HOH A 14 226 42 HOH TIP . F 4 HOH A 15 227 45 HOH TIP . F 4 HOH A 16 228 46 HOH TIP . F 4 HOH A 17 229 47 HOH TIP . F 4 HOH A 18 230 48 HOH TIP . F 4 HOH A 19 231 50 HOH TIP . F 4 HOH A 20 232 51 HOH TIP . F 4 HOH A 21 233 54 HOH TIP . F 4 HOH A 22 234 57 HOH TIP . F 4 HOH A 23 235 58 HOH TIP . F 4 HOH A 24 236 66 HOH TIP . F 4 HOH A 25 237 68 HOH TIP . F 4 HOH A 26 238 71 HOH TIP . G 4 HOH B 1 215 1 HOH TIP . G 4 HOH B 2 216 4 HOH TIP . G 4 HOH B 3 217 9 HOH TIP . G 4 HOH B 4 218 12 HOH TIP . G 4 HOH B 5 219 13 HOH TIP . G 4 HOH B 6 220 34 HOH TIP . G 4 HOH B 7 221 36 HOH TIP . G 4 HOH B 8 222 49 HOH TIP . G 4 HOH B 9 223 59 HOH TIP . G 4 HOH B 10 224 62 HOH TIP . G 4 HOH B 11 225 67 HOH TIP . G 4 HOH B 12 226 70 HOH TIP . G 4 HOH B 13 227 72 HOH TIP . H 4 HOH L 1 212 3 HOH TIP . H 4 HOH L 2 213 11 HOH TIP . H 4 HOH L 3 214 19 HOH TIP . H 4 HOH L 4 215 21 HOH TIP . H 4 HOH L 5 216 22 HOH TIP . H 4 HOH L 6 217 25 HOH TIP . H 4 HOH L 7 218 30 HOH TIP . H 4 HOH L 8 219 33 HOH TIP . H 4 HOH L 9 220 35 HOH TIP . H 4 HOH L 10 221 38 HOH TIP . H 4 HOH L 11 222 40 HOH TIP . H 4 HOH L 12 223 41 HOH TIP . H 4 HOH L 13 224 52 HOH TIP . H 4 HOH L 14 225 53 HOH TIP . H 4 HOH L 15 226 55 HOH TIP . H 4 HOH L 16 227 64 HOH TIP . H 4 HOH L 17 228 65 HOH TIP . H 4 HOH L 18 229 69 HOH TIP . I 4 HOH H 1 215 8 HOH TIP . I 4 HOH H 2 216 10 HOH TIP . I 4 HOH H 3 217 14 HOH TIP . I 4 HOH H 4 218 18 HOH TIP . I 4 HOH H 5 219 20 HOH TIP . I 4 HOH H 6 220 23 HOH TIP . I 4 HOH H 7 221 26 HOH TIP . I 4 HOH H 8 222 31 HOH TIP . I 4 HOH H 9 223 32 HOH TIP . I 4 HOH H 10 224 43 HOH TIP . I 4 HOH H 11 225 44 HOH TIP . I 4 HOH H 12 226 56 HOH TIP . I 4 HOH H 13 227 60 HOH TIP . I 4 HOH H 14 228 61 HOH TIP . I 4 HOH H 15 229 63 HOH TIP . I 4 HOH H 16 230 73 HOH TIP . I 4 HOH H 17 231 74 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 59.554 _atom_site.Cartn_y 20.422 _atom_site.Cartn_z 24.083 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 212 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #