data_1D5I
#
_model_server_result.job_id            F0SUbZsjiYheS6krc5qfmg 
_model_server_result.datetime_utc      '2024-10-10 23:28:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d5i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":212}' 
#
_entry.id    1D5I 
#
_exptl.entry_id    1D5I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.53 
_cell.angle_gamma         90 
_cell.entry_id            1D5I 
_cell.length_a            53.17 
_cell.length_b            64.13 
_cell.length_c            75.95 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D5I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf4 B SG CYS 147 H CYS 140 1_555 B SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc1 C CD CD . L CD 212 1_555 F O HOH . L HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc2 C CD CD . L CD 212 1_555 F O HOH . L HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc3 C CD CD . L CD 212 1_555 F O HOH . L HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc4 E CD CD . L CD 214 1_555 F O HOH . L HOH 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc5 C CD CD . L CD 212 1_555 A ND2 ASN 138 L ASN 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc6 C CD CD . L CD 212 1_555 B NE2 HIS 171 H HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
metalc ? metalc7 C CD CD . L CD 212 1_555 F O HOH . L HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc8 D CD CD . L CD 213 1_555 A OE1 GLU 93 L GLU 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc9 D CD CD . L CD 213 1_555 F O HOH . L HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
metalc ? metalc10 E CD CD . L CD 214 1_555 A OE2 GLU 81 L GLU 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 E CD CD . L CD 214 1_555 F O HOH . L HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? 
metalc ? metalc12 E CD CD . L CD 214 1_555 A OE1 GLU 81 L GLU 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1D5I 
_atom_sites.fract_transf_matrix[1][1]    0.018808 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003157 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CD L 1 212 3 CD CD . 
D 3 CD L 1 213 1 CD CD . 
E 3 CD L 1 214 2 CD CD . 
F 4 HOH L 1 215 1 HOH TIP . 
F 4 HOH L 2 216 2 HOH TIP . 
F 4 HOH L 3 217 3 HOH TIP . 
F 4 HOH L 4 218 6 HOH TIP . 
F 4 HOH L 5 219 7 HOH TIP . 
F 4 HOH L 6 220 8 HOH TIP . 
F 4 HOH L 7 221 11 HOH TIP . 
F 4 HOH L 8 222 16 HOH TIP . 
F 4 HOH L 9 223 17 HOH TIP . 
F 4 HOH L 10 224 19 HOH TIP . 
F 4 HOH L 11 225 20 HOH TIP . 
F 4 HOH L 12 226 21 HOH TIP . 
F 4 HOH L 13 227 24 HOH TIP . 
F 4 HOH L 14 228 25 HOH TIP . 
F 4 HOH L 15 229 27 HOH TIP . 
F 4 HOH L 16 230 28 HOH TIP . 
F 4 HOH L 17 231 31 HOH TIP . 
F 4 HOH L 18 232 33 HOH TIP . 
F 4 HOH L 19 233 34 HOH TIP . 
F 4 HOH L 20 234 36 HOH TIP . 
F 4 HOH L 21 235 37 HOH TIP . 
F 4 HOH L 22 236 38 HOH TIP . 
F 4 HOH L 23 237 45 HOH TIP . 
F 4 HOH L 24 238 46 HOH TIP . 
F 4 HOH L 25 239 47 HOH TIP . 
F 4 HOH L 26 240 49 HOH TIP . 
F 4 HOH L 27 241 51 HOH TIP . 
F 4 HOH L 28 242 52 HOH TIP . 
F 4 HOH L 29 243 53 HOH TIP . 
F 4 HOH L 30 244 54 HOH TIP . 
F 4 HOH L 31 245 55 HOH TIP . 
F 4 HOH L 32 246 58 HOH TIP . 
F 4 HOH L 33 247 59 HOH TIP . 
F 4 HOH L 34 248 66 HOH TIP . 
F 4 HOH L 35 249 67 HOH TIP . 
F 4 HOH L 36 250 69 HOH TIP . 
F 4 HOH L 37 251 71 HOH TIP . 
F 4 HOH L 38 252 72 HOH TIP . 
F 4 HOH L 39 253 75 HOH TIP . 
F 4 HOH L 40 254 78 HOH TIP . 
F 4 HOH L 41 255 79 HOH TIP . 
F 4 HOH L 42 256 82 HOH TIP . 
F 4 HOH L 43 257 85 HOH TIP . 
F 4 HOH L 44 258 86 HOH TIP . 
F 4 HOH L 45 259 89 HOH TIP . 
F 4 HOH L 46 260 90 HOH TIP . 
F 4 HOH L 47 261 92 HOH TIP . 
F 4 HOH L 48 262 94 HOH TIP . 
F 4 HOH L 49 263 97 HOH TIP . 
F 4 HOH L 50 264 98 HOH TIP . 
F 4 HOH L 51 265 99 HOH TIP . 
F 4 HOH L 52 266 100 HOH TIP . 
F 4 HOH L 53 267 101 HOH TIP . 
F 4 HOH L 54 268 102 HOH TIP . 
F 4 HOH L 55 269 105 HOH TIP . 
F 4 HOH L 56 270 106 HOH TIP . 
F 4 HOH L 57 271 109 HOH TIP . 
F 4 HOH L 58 272 110 HOH TIP . 
F 4 HOH L 59 273 112 HOH TIP . 
F 4 HOH L 60 274 116 HOH TIP . 
F 4 HOH L 61 275 117 HOH TIP . 
F 4 HOH L 62 276 118 HOH TIP . 
F 4 HOH L 63 277 119 HOH TIP . 
F 4 HOH L 64 278 121 HOH TIP . 
F 4 HOH L 65 279 123 HOH TIP . 
F 4 HOH L 66 280 125 HOH TIP . 
F 4 HOH L 67 281 128 HOH TIP . 
F 4 HOH L 68 282 131 HOH TIP . 
F 4 HOH L 69 283 132 HOH TIP . 
F 4 HOH L 70 284 133 HOH TIP . 
F 4 HOH L 71 285 134 HOH TIP . 
F 4 HOH L 72 286 137 HOH TIP . 
F 4 HOH L 73 287 138 HOH TIP . 
F 4 HOH L 74 288 140 HOH TIP . 
F 4 HOH L 75 289 143 HOH TIP . 
F 4 HOH L 76 290 144 HOH TIP . 
F 4 HOH L 77 291 145 HOH TIP . 
F 4 HOH L 78 292 147 HOH TIP . 
F 4 HOH L 79 293 148 HOH TIP . 
F 4 HOH L 80 294 150 HOH TIP . 
F 4 HOH L 81 295 152 HOH TIP . 
F 4 HOH L 82 296 153 HOH TIP . 
F 4 HOH L 83 297 163 HOH TIP . 
F 4 HOH L 84 298 164 HOH TIP . 
F 4 HOH L 85 299 166 HOH TIP . 
F 4 HOH L 86 300 168 HOH TIP . 
F 4 HOH L 87 301 171 HOH TIP . 
F 4 HOH L 88 302 172 HOH TIP . 
F 4 HOH L 89 303 173 HOH TIP . 
F 4 HOH L 90 304 174 HOH TIP . 
F 4 HOH L 91 305 178 HOH TIP . 
F 4 HOH L 92 306 179 HOH TIP . 
F 4 HOH L 93 307 181 HOH TIP . 
F 4 HOH L 94 308 182 HOH TIP . 
F 4 HOH L 95 309 183 HOH TIP . 
F 4 HOH L 96 310 187 HOH TIP . 
F 4 HOH L 97 311 189 HOH TIP . 
F 4 HOH L 98 312 1 HOH CD . 
F 4 HOH L 99 313 2 HOH CD . 
G 4 HOH H 1 215 5 HOH TIP . 
G 4 HOH H 2 216 9 HOH TIP . 
G 4 HOH H 3 217 10 HOH TIP . 
G 4 HOH H 4 218 12 HOH TIP . 
G 4 HOH H 5 219 13 HOH TIP . 
G 4 HOH H 6 220 14 HOH TIP . 
G 4 HOH H 7 221 15 HOH TIP . 
G 4 HOH H 8 222 18 HOH TIP . 
G 4 HOH H 9 223 22 HOH TIP . 
G 4 HOH H 10 224 23 HOH TIP . 
G 4 HOH H 11 225 26 HOH TIP . 
G 4 HOH H 12 226 29 HOH TIP . 
G 4 HOH H 13 227 30 HOH TIP . 
G 4 HOH H 14 228 32 HOH TIP . 
G 4 HOH H 15 229 35 HOH TIP . 
G 4 HOH H 16 230 39 HOH TIP . 
G 4 HOH H 17 231 41 HOH TIP . 
G 4 HOH H 18 232 43 HOH TIP . 
G 4 HOH H 19 233 44 HOH TIP . 
G 4 HOH H 20 234 48 HOH TIP . 
G 4 HOH H 21 235 57 HOH TIP . 
G 4 HOH H 22 236 60 HOH TIP . 
G 4 HOH H 23 237 61 HOH TIP . 
G 4 HOH H 24 238 62 HOH TIP . 
G 4 HOH H 25 239 63 HOH TIP . 
G 4 HOH H 26 240 64 HOH TIP . 
G 4 HOH H 27 241 65 HOH TIP . 
G 4 HOH H 28 242 68 HOH TIP . 
G 4 HOH H 29 243 70 HOH TIP . 
G 4 HOH H 30 244 73 HOH TIP . 
G 4 HOH H 31 245 74 HOH TIP . 
G 4 HOH H 32 246 76 HOH TIP . 
G 4 HOH H 33 247 77 HOH TIP . 
G 4 HOH H 34 248 80 HOH TIP . 
G 4 HOH H 35 249 83 HOH TIP . 
G 4 HOH H 36 250 84 HOH TIP . 
G 4 HOH H 37 251 87 HOH TIP . 
G 4 HOH H 38 252 88 HOH TIP . 
G 4 HOH H 39 253 91 HOH TIP . 
G 4 HOH H 40 254 93 HOH TIP . 
G 4 HOH H 41 255 95 HOH TIP . 
G 4 HOH H 42 256 96 HOH TIP . 
G 4 HOH H 43 257 103 HOH TIP . 
G 4 HOH H 44 258 104 HOH TIP . 
G 4 HOH H 45 259 107 HOH TIP . 
G 4 HOH H 46 260 108 HOH TIP . 
G 4 HOH H 47 261 111 HOH TIP . 
G 4 HOH H 48 262 113 HOH TIP . 
G 4 HOH H 49 263 114 HOH TIP . 
G 4 HOH H 50 264 115 HOH TIP . 
G 4 HOH H 51 265 120 HOH TIP . 
G 4 HOH H 52 266 122 HOH TIP . 
G 4 HOH H 53 267 124 HOH TIP . 
G 4 HOH H 54 268 126 HOH TIP . 
G 4 HOH H 55 269 127 HOH TIP . 
G 4 HOH H 56 270 129 HOH TIP . 
G 4 HOH H 57 271 130 HOH TIP . 
G 4 HOH H 58 272 135 HOH TIP . 
G 4 HOH H 59 273 136 HOH TIP . 
G 4 HOH H 60 274 139 HOH TIP . 
G 4 HOH H 61 275 141 HOH TIP . 
G 4 HOH H 62 276 142 HOH TIP . 
G 4 HOH H 63 277 151 HOH TIP . 
G 4 HOH H 64 278 154 HOH TIP . 
G 4 HOH H 65 279 155 HOH TIP . 
G 4 HOH H 66 280 156 HOH TIP . 
G 4 HOH H 67 281 157 HOH TIP . 
G 4 HOH H 68 282 158 HOH TIP . 
G 4 HOH H 69 283 159 HOH TIP . 
G 4 HOH H 70 284 160 HOH TIP . 
G 4 HOH H 71 285 162 HOH TIP . 
G 4 HOH H 72 286 165 HOH TIP . 
G 4 HOH H 73 287 167 HOH TIP . 
G 4 HOH H 74 288 169 HOH TIP . 
G 4 HOH H 75 289 170 HOH TIP . 
G 4 HOH H 76 290 175 HOH TIP . 
G 4 HOH H 77 291 176 HOH TIP . 
G 4 HOH H 78 292 177 HOH TIP . 
G 4 HOH H 79 293 180 HOH TIP . 
G 4 HOH H 80 294 184 HOH TIP . 
G 4 HOH H 81 295 185 HOH TIP . 
G 4 HOH H 82 296 188 HOH TIP . 
G 4 HOH H 83 297 190 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               46.051 
_atom_site.Cartn_y               20.009 
_atom_site.Cartn_z               8.855 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           212 
_atom_site.auth_asym_id          L 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#